Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_O09
(675 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q86U70|LDB1_HUMAN LIM domain-binding protein 1 (Carboxyl... 147 3e-35
sp|P70662|LDB1_MOUSE LIM domain-binding protein 1 (Nuclear ... 147 3e-35
sp|P70060|LDB1_XENLA LIM domain-binding protein 1 (XLDB1) 146 4e-35
sp|O55203|LDB2_MOUSE LIM domain-binding protein 2 (Carboxyl... 143 5e-34
sp|O43679|LDB2_HUMAN LIM domain-binding protein 2 (Carboxyl... 137 2e-32
sp|P27454|VNCS_AEDEV Noncapsid protein NS-1 (Nonstructural ... 33 0.52
sp|Q5RAS1|RRM3_PONPY Putative rRNA methyltransferase 3 (rRN... 33 0.68
sp|Q9W596|FUTSC_DROME Microtubule-associated protein futsch 33 0.68
sp|Q8IY81|RRM3_HUMAN Putative rRNA methyltransferase 3 (rRN... 32 2.0
sp|Q5BKF8|CCNL2_XENTR Cyclin-L2 32 2.0
>sp|Q86U70|LDB1_HUMAN LIM domain-binding protein 1 (Carboxyl-terminal LIM domain-binding
protein 2) (CLIM-2) (LIM-domain binding factor CLIM2)
Length = 375
Score = 147 bits (370), Expect = 3e-35
Identities = 75/134 (55%), Positives = 94/134 (70%), Gaps = 4/134 (2%)
Frame = +1
Query: 100 ESWTFQIRSHREFILRSMPGFGCNQEQMLMEFSKNVTRCGIPNYTMNFFRICTILEPMQE 279
++W F IR HRE I RS+ QML + SKN+TRCG+ N T+N+ R+C ILEPMQE
Sbjct: 159 KTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQE 218
Query: 280 LMSRQKAYSLSPKDCLKTTLFQKWQRMVAPPGQQPKSESNRQTNKRRKRK---GSTANSD 450
LMSR K YSLSP+DCLKT LFQKWQRMVAPP + + +Q +KRRKRK GST +S
Sbjct: 219 LMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAE----PTRQQPSKRRKRKMSGGSTMSSG 274
Query: 451 SA-SNRSSKRKQSP 489
+N S+ +K+SP
Sbjct: 275 GGNTNNSNSKKKSP 288
>sp|P70662|LDB1_MOUSE LIM domain-binding protein 1 (Nuclear LIM interactor)
Length = 375
Score = 147 bits (370), Expect = 3e-35
Identities = 75/134 (55%), Positives = 94/134 (70%), Gaps = 4/134 (2%)
Frame = +1
Query: 100 ESWTFQIRSHREFILRSMPGFGCNQEQMLMEFSKNVTRCGIPNYTMNFFRICTILEPMQE 279
++W F IR HRE I RS+ QML + SKN+TRCG+ N T+N+ R+C ILEPMQE
Sbjct: 159 KTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQE 218
Query: 280 LMSRQKAYSLSPKDCLKTTLFQKWQRMVAPPGQQPKSESNRQTNKRRKRK---GSTANSD 450
LMSR K YSLSP+DCLKT LFQKWQRMVAPP + + +Q +KRRKRK GST +S
Sbjct: 219 LMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAE----PARQQPSKRRKRKMSGGSTMSSG 274
Query: 451 SA-SNRSSKRKQSP 489
+N S+ +K+SP
Sbjct: 275 GGNTNNSNSKKKSP 288
>sp|P70060|LDB1_XENLA LIM domain-binding protein 1 (XLDB1)
Length = 375
Score = 146 bits (369), Expect = 4e-35
Identities = 75/134 (55%), Positives = 93/134 (69%), Gaps = 4/134 (2%)
Frame = +1
Query: 100 ESWTFQIRSHREFILRSMPGFGCNQEQMLMEFSKNVTRCGIPNYTMNFFRICTILEPMQE 279
++W F IR HRE I RS+ QML + SKN+TRCG+ N T+N+ R+C ILEPMQE
Sbjct: 159 KTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQE 218
Query: 280 LMSRQKAYSLSPKDCLKTTLFQKWQRMVAPPGQQPKSESNRQTNKRRKRK---GSTANSD 450
LMSR K YSLSP+DCLKT LFQKWQRMVAPP + + + NKRRKRK GST +S
Sbjct: 219 LMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAE----PARQAPNKRRKRKMSGGSTMSSG 274
Query: 451 SA-SNRSSKRKQSP 489
+N S+ +K+SP
Sbjct: 275 GGNTNNSNSKKKSP 288
>sp|O55203|LDB2_MOUSE LIM domain-binding protein 2 (Carboxyl-terminal LIM domain-binding
protein 1) (CLIM-1) (LIM-domain binding factor CLIM1)
Length = 373
Score = 143 bits (360), Expect = 5e-34
Identities = 70/139 (50%), Positives = 96/139 (69%), Gaps = 5/139 (3%)
Frame = +1
Query: 100 ESWTFQIRSHREFILRSMPGFGCNQEQMLMEFSKNVTRCGIPNYTMNFFRICTILEPMQE 279
++W F IR +RE + RS+ Q+L + SKN+TR G+ N+T+N+ R+C ILEPMQE
Sbjct: 156 KTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQE 215
Query: 280 LMSRQKAYSLSPKDCLKTTLFQKWQRMVAPPGQQPKSESNRQTNKRRKRKGSTANSDSAS 459
LMSR K Y+LSP+DCLKT LFQKWQRMVAPP + + + T KRRKRK ST+++ ++S
Sbjct: 216 LMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAEPTR----QPTTKRRKRKNSTSSTSNSS 271
Query: 460 -----NRSSKRKQSPVPSL 501
N S +K++P SL
Sbjct: 272 GGNTTNSSGSKKKTPAASL 290
>sp|O43679|LDB2_HUMAN LIM domain-binding protein 2 (Carboxyl-terminal LIM domain-binding
protein 1) (CLIM-1) (LIM-domain binding factor CLIM1)
Length = 373
Score = 137 bits (346), Expect = 2e-32
Identities = 67/139 (48%), Positives = 95/139 (68%), Gaps = 5/139 (3%)
Frame = +1
Query: 100 ESWTFQIRSHREFILRSMPGFGCNQEQMLMEFSKNVTRCGIPNYTMNFFRICTILEPMQE 279
++W F IR +RE + RS+ Q+L + SKN+TR G+ N+T+N+ R+C ILEPMQE
Sbjct: 156 KTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQE 215
Query: 280 LMSRQKAYSLSPKDCLKTTLFQKWQRMVAPPGQQPKSESNRQTNKRRKRKGSTANSDSAS 459
LMSR K Y+LSP+DCLKT LFQKWQRMVAPP + + + T KRRKRK ST+++ ++S
Sbjct: 216 LMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAE----PTRQPTTKRRKRKNSTSSTSNSS 271
Query: 460 -----NRSSKRKQSPVPSL 501
N + +K++ +L
Sbjct: 272 AGNNANSTGSKKKTTAANL 290
>sp|P27454|VNCS_AEDEV Noncapsid protein NS-1 (Nonstructural protein NS1) (NCVP1)
Length = 849
Score = 33.5 bits (75), Expect = 0.52
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1
Query: 382 PKSESNRQTNKRRKRKGSTANSDSASNRSSKRKQS 486
PK ++ QTNKR+K +T +S S N+SS +Q+
Sbjct: 272 PKQGTSNQTNKRKKSTDTTESSGSKKNKSSNYQQN 306
>sp|Q5RAS1|RRM3_PONPY Putative rRNA methyltransferase 3 (rRNA
(uridine-2'-O-)-methyltransferase 3)
Length = 841
Score = 33.1 bits (74), Expect = 0.68
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +1
Query: 289 RQKAYSLSPKDCLKTTLFQKWQRMVAPPGQQPKSESNRQTNKRRKRKGSTANSDSASNRS 468
RQ+ + CLKT + + AP G + S + T + + K ++SDS+S+
Sbjct: 560 RQQQLPQTLPSCLKTEIMSPLYQDEAPKGTEASSGTEAATGLKGEEKDGISDSDSSSSSE 619
Query: 469 SKRKQSPV 492
+ PV
Sbjct: 620 EEESWEPV 627
>sp|Q9W596|FUTSC_DROME Microtubule-associated protein futsch
Length = 5412
Score = 33.1 bits (74), Expect = 0.68
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +1
Query: 343 QKWQRMVAPPGQQPKSESNRQTNKRRKRKGSTANSDSASNRSSKRKQSPVPSLP 504
Q+ Q+ V P + K+E + +K R S S +K K+SPVPS P
Sbjct: 1410 QEAQKPVPAPEEAIKTEKSPLASKETSRPESATGSVKEDTEQTKSKKSPVPSRP 1463
Score = 29.6 bits (65), Expect = 7.5
Identities = 20/74 (27%), Positives = 32/74 (43%)
Frame = +1
Query: 277 ELMSRQKAYSLSPKDCLKTTLFQKWQRMVAPPGQQPKSESNRQTNKRRKRKGSTANSDSA 456
E SR + + S KD + + + + VA P E++R + K S
Sbjct: 1947 EEASRPASVAESVKDEAEKSKEESRRESVAEKSPLPSKEASRPASVAESIKDEAEKSKEE 2006
Query: 457 SNRSSKRKQSPVPS 498
S R S ++SP+PS
Sbjct: 2007 SRRESVAEKSPLPS 2020
Score = 29.3 bits (64), Expect = 9.8
Identities = 21/87 (24%), Positives = 35/87 (40%)
Frame = +1
Query: 286 SRQKAYSLSPKDCLKTTLFQKWQRMVAPPGQQPKSESNRQTNKRRKRKGSTANSDSASNR 465
SR + + S KD + + + + VA P E++R + K S S R
Sbjct: 2209 SRPASVAESIKDEAEKSKEETRRESVAEKSPLPSKEASRPASVAESIKDEAEKSKEESRR 2268
Query: 466 SSKRKQSPVPSLPNLNQPGCAETTNQK 546
S ++SP+PS AE+ +
Sbjct: 2269 ESAAEKSPLPSKEASRPASVAESVKDE 2295
>sp|Q8IY81|RRM3_HUMAN Putative rRNA methyltransferase 3 (rRNA
(uridine-2'-O-)-methyltransferase 3)
Length = 847
Score = 31.6 bits (70), Expect = 2.0
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = +1
Query: 310 SPKDCLKTTLFQKWQRMVAPPGQQPKSESNRQTNKRRKRKGSTANSDSASNRSSKRKQSP 489
+P CLKT + + AP G + S + T + K ++SDS+++ + P
Sbjct: 573 TPPSCLKTEIMSPLYQDEAPKGTEASSGTEAATGLEGEEKDGISDSDSSTSSEEEESWEP 632
Query: 490 V 492
+
Sbjct: 633 L 633
>sp|Q5BKF8|CCNL2_XENTR Cyclin-L2
Length = 497
Score = 31.6 bits (70), Expect = 2.0
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 385 KSESNRQTNKRRKRKGSTANSDSASNRSSKRKQSPVPSLPN 507
+S+S Q+ KRRK + + +SDS S S+ + P PN
Sbjct: 374 RSQSRSQSPKRRKSQSYSPSSDSKSRSPSRSRSDSPPHKPN 414
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,871,404
Number of Sequences: 369166
Number of extensions: 1533269
Number of successful extensions: 4828
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4792
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5684835195
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)