Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_E11
(717 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O55203|LDB2_MOUSE LIM domain-binding protein 2 (Carboxyl... 205 9e-53
sp|Q86U70|LDB1_HUMAN LIM domain-binding protein 1 (Carboxyl... 202 7e-52
sp|P70662|LDB1_MOUSE LIM domain-binding protein 1 (Nuclear ... 202 7e-52
sp|P70060|LDB1_XENLA LIM domain-binding protein 1 (XLDB1) 202 7e-52
sp|O43679|LDB2_HUMAN LIM domain-binding protein 2 (Carboxyl... 200 4e-51
sp|Q5RAS1|RRM3_PONPY Putative rRNA methyltransferase 3 (rRN... 33 0.99
sp|Q9W596|FUTSC_DROME Microtubule-associated protein futsch 33 0.99
sp|P27454|VNCS_AEDEV Noncapsid protein NS-1 (Nonstructural ... 32 1.3
sp|Q8BZX4|SFR12_MOUSE Splicing factor, arginine/serine-rich... 31 2.9
sp|Q8IY81|RRM3_HUMAN Putative rRNA methyltransferase 3 (rRN... 31 2.9
>sp|O55203|LDB2_MOUSE LIM domain-binding protein 2 (Carboxyl-terminal LIM domain-binding
protein 1) (CLIM-1) (LIM-domain binding factor CLIM1)
Length = 373
Score = 205 bits (522), Expect = 9e-53
Identities = 110/237 (46%), Positives = 151/237 (63%), Gaps = 6/237 (2%)
Frame = +1
Query: 4 FDSGCSEYYYFLRSVRESYHTSTIVVDSESAQMVMTFPRXXXXXXXXVEGRLVLDFNYDE 183
F+ G ++ YY L+ +ESYH S+I VD + MV + EGRL+L+F +D+
Sbjct: 93 FEGGVTDLYYILKHSKESYHNSSITVDCDQCAMVTQHGKPMFTKVC-TEGRLILEFTFDD 151
Query: 184 LMRIRSWTFQIRSHREFILRSMPGFGCNQEQMLMEFSKNVTRCGIPNYTMNFFRICTILE 363
LMRI++W F IR +RE + RS+ Q+L + SKN+TR G+ N+T+N+ R+C ILE
Sbjct: 152 LMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILE 211
Query: 364 PMQELMSRQKAYSLSPKDCLKTTLFQKWQRMVAPPGQQPKSESNRQTNKRRRRKGSTANS 543
PMQELMSR K Y+LSP+DCLKT LFQKWQRMVAPP + + + T KRR+RK ST+++
Sbjct: 212 PMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAE----PTRQPTTKRRKRKNSTSST 267
Query: 544 DSAS-----NRSSKRKQSPVPSLPNLNQ-PGM**L*ESRH*WRRFGDEDERSITRLE 696
++S N S +K++P SL Q P + + E FGDEDER ITRLE
Sbjct: 268 SNSSGGNTTNSSGSKKKTPAASLSLATQVPDVMVVGEPTLMGGEFGDEDERLITRLE 324
>sp|Q86U70|LDB1_HUMAN LIM domain-binding protein 1 (Carboxyl-terminal LIM domain-binding
protein 2) (CLIM-2) (LIM-domain binding factor CLIM2)
Length = 375
Score = 202 bits (514), Expect = 7e-52
Identities = 111/236 (47%), Positives = 151/236 (63%), Gaps = 5/236 (2%)
Frame = +1
Query: 4 FDSGCSEYYYFLRSVRESYHTSTIVVDSESAQMVMTFPRXXXXXXXXVEGRLVLDFNYDE 183
F+ G +E YY L+ +E++H++ + +D + MV + VEGRL L+F +D+
Sbjct: 96 FEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVC-VEGRLYLEFMFDD 154
Query: 184 LMRIRSWTFQIRSHREFILRSMPGFGCNQEQMLMEFSKNVTRCGIPNYTMNFFRICTILE 363
+MRI++W F IR HRE I RS+ QML + SKN+TRCG+ N T+N+ R+C ILE
Sbjct: 155 MMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILE 214
Query: 364 PMQELMSRQKAYSLSPKDCLKTTLFQKWQRMVAPPGQQPKSESNRQTNKRRRRK---GST 534
PMQELMSR K YSLSP+DCLKT LFQKWQRMVAPP + + +Q +KRR+RK GST
Sbjct: 215 PMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAE----PTRQQPSKRRKRKMSGGST 270
Query: 535 ANSDSA-SNRSSKRKQSPVPSLPNLNQ-PGM**L*ESRH*WRRFGDEDERSITRLE 696
+S +N S+ +K+SP + +Q P + + E FGDEDER ITRLE
Sbjct: 271 MSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDEDERLITRLE 326
>sp|P70662|LDB1_MOUSE LIM domain-binding protein 1 (Nuclear LIM interactor)
Length = 375
Score = 202 bits (514), Expect = 7e-52
Identities = 111/236 (47%), Positives = 151/236 (63%), Gaps = 5/236 (2%)
Frame = +1
Query: 4 FDSGCSEYYYFLRSVRESYHTSTIVVDSESAQMVMTFPRXXXXXXXXVEGRLVLDFNYDE 183
F+ G +E YY L+ +E++H++ + +D + MV + VEGRL L+F +D+
Sbjct: 96 FEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVC-VEGRLYLEFMFDD 154
Query: 184 LMRIRSWTFQIRSHREFILRSMPGFGCNQEQMLMEFSKNVTRCGIPNYTMNFFRICTILE 363
+MRI++W F IR HRE I RS+ QML + SKN+TRCG+ N T+N+ R+C ILE
Sbjct: 155 MMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILE 214
Query: 364 PMQELMSRQKAYSLSPKDCLKTTLFQKWQRMVAPPGQQPKSESNRQTNKRRRRK---GST 534
PMQELMSR K YSLSP+DCLKT LFQKWQRMVAPP + + +Q +KRR+RK GST
Sbjct: 215 PMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAE----PARQQPSKRRKRKMSGGST 270
Query: 535 ANSDSA-SNRSSKRKQSPVPSLPNLNQ-PGM**L*ESRH*WRRFGDEDERSITRLE 696
+S +N S+ +K+SP + +Q P + + E FGDEDER ITRLE
Sbjct: 271 MSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDEDERLITRLE 326
>sp|P70060|LDB1_XENLA LIM domain-binding protein 1 (XLDB1)
Length = 375
Score = 202 bits (514), Expect = 7e-52
Identities = 109/233 (46%), Positives = 147/233 (63%), Gaps = 2/233 (0%)
Frame = +1
Query: 4 FDSGCSEYYYFLRSVRESYHTSTIVVDSESAQMVMTFPRXXXXXXXXVEGRLVLDFNYDE 183
F+ G +E YY L+ +ES+H + + +D + MV + VEGRL L+F +D+
Sbjct: 96 FEGGATELYYVLKHPKESFHNNFVSLDCDQCTMVTQHGKPMFTQVC-VEGRLYLEFMFDD 154
Query: 184 LMRIRSWTFQIRSHREFILRSMPGFGCNQEQMLMEFSKNVTRCGIPNYTMNFFRICTILE 363
+MRI++W F IR HRE I RS+ QML + SKN+TRCG+ N T+N+ R+C ILE
Sbjct: 155 MMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILE 214
Query: 364 PMQELMSRQKAYSLSPKDCLKTTLFQKWQRMVAPPGQQPKSESNRQTNKRRRRKGSTANS 543
PMQELMSR K YSLSP+DCLKT LFQKWQRMVAPP + + N++ KR+ GST +S
Sbjct: 215 PMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPARQAPNKR-RKRKMSGGSTMSS 273
Query: 544 DSA-SNRSSKRKQSPVPSLPNLNQ-PGM**L*ESRH*WRRFGDEDERSITRLE 696
+N S+ +K+SP + +Q P + + E FGDEDER ITRLE
Sbjct: 274 GGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDEDERLITRLE 326
>sp|O43679|LDB2_HUMAN LIM domain-binding protein 2 (Carboxyl-terminal LIM domain-binding
protein 1) (CLIM-1) (LIM-domain binding factor CLIM1)
Length = 373
Score = 200 bits (508), Expect = 4e-51
Identities = 107/237 (45%), Positives = 151/237 (63%), Gaps = 6/237 (2%)
Frame = +1
Query: 4 FDSGCSEYYYFLRSVRESYHTSTIVVDSESAQMVMTFPRXXXXXXXXVEGRLVLDFNYDE 183
F+ G ++ YY L+ +ESYH S+I VD + MV + EGRL+L+F +D+
Sbjct: 93 FEGGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVC-TEGRLILEFTFDD 151
Query: 184 LMRIRSWTFQIRSHREFILRSMPGFGCNQEQMLMEFSKNVTRCGIPNYTMNFFRICTILE 363
LMRI++W F IR +RE + RS+ Q+L + SKN+TR G+ N+T+N+ R+C ILE
Sbjct: 152 LMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILE 211
Query: 364 PMQELMSRQKAYSLSPKDCLKTTLFQKWQRMVAPPGQQPKSESNRQTNKRRRRKGSTANS 543
PMQELMSR K Y+LSP+DCLKT LFQKWQRMVAPP + + + T KRR+RK ST+++
Sbjct: 212 PMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAE----PTRQPTTKRRKRKNSTSST 267
Query: 544 DSAS-----NRSSKRKQSPVPSLPNLNQ-PGM**L*ESRH*WRRFGDEDERSITRLE 696
++S N + +K++ +L +Q P + + E FGDEDER ITRLE
Sbjct: 268 SNSSAGNNANSTGSKKKTTAANLSLSSQVPDVMVVGEPTLMGGEFGDEDERLITRLE 324
>sp|Q5RAS1|RRM3_PONPY Putative rRNA methyltransferase 3 (rRNA
(uridine-2'-O-)-methyltransferase 3)
Length = 841
Score = 32.7 bits (73), Expect = 0.99
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = +1
Query: 385 RQKAYSLSPKDCLKTTLFQKWQRMVAPPGQQPKSESNRQTNKRRRRKGSTANSDSASNRS 564
RQ+ + CLKT + + AP G + S + T + K ++SDS+S+
Sbjct: 560 RQQQLPQTLPSCLKTEIMSPLYQDEAPKGTEASSGTEAATGLKGEEKDGISDSDSSSSSE 619
Query: 565 SKRKQSPV 588
+ PV
Sbjct: 620 EEESWEPV 627
>sp|Q9W596|FUTSC_DROME Microtubule-associated protein futsch
Length = 5412
Score = 32.7 bits (73), Expect = 0.99
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +1
Query: 439 QKWQRMVAPPGQQPKSESNRQTNKRRRRKGSTANSDSASNRSSKRKQSPVPSLP 600
Q+ Q+ V P + K+E + +K R S S +K K+SPVPS P
Sbjct: 1410 QEAQKPVPAPEEAIKTEKSPLASKETSRPESATGSVKEDTEQTKSKKSPVPSRP 1463
>sp|P27454|VNCS_AEDEV Noncapsid protein NS-1 (Nonstructural protein NS1) (NCVP1)
Length = 849
Score = 32.3 bits (72), Expect = 1.3
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 478 PKSESNRQTNKRRRRKGSTANSDSASNRSSKRKQS 582
PK ++ QTNKR++ +T +S S N+SS +Q+
Sbjct: 272 PKQGTSNQTNKRKKSTDTTESSGSKKNKSSNYQQN 306
>sp|Q8BZX4|SFR12_MOUSE Splicing factor, arginine/serine-rich 12 (Serine-arginine-rich
splicing regulatory protein 86) (SRrp86)
Length = 494
Score = 31.2 bits (69), Expect = 2.9
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +1
Query: 439 QKWQRMVAPPGQQPKSESNRQTNKRRRRKGSTANSDS-ASNRSSKRKQSPVPS 594
+K ++ PP S +R T++ RRR+ S ++S S ++++ KRK S PS
Sbjct: 341 KKEKKSRTPPRSYNASRRSRSTSRERRRRRSRSSSRSPRTSKTVKRKSSRSPS 393
>sp|Q8IY81|RRM3_HUMAN Putative rRNA methyltransferase 3 (rRNA
(uridine-2'-O-)-methyltransferase 3)
Length = 847
Score = 31.2 bits (69), Expect = 2.9
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = +1
Query: 406 SPKDCLKTTLFQKWQRMVAPPGQQPKSESNRQTNKRRRRKGSTANSDSASNRSSKRKQSP 585
+P CLKT + + AP G + S + T K ++SDS+++ + P
Sbjct: 573 TPPSCLKTEIMSPLYQDEAPKGTEASSGTEAATGLEGEEKDGISDSDSSTSSEEEESWEP 632
Query: 586 V 588
+
Sbjct: 633 L 633
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,636,465
Number of Sequences: 369166
Number of extensions: 1647853
Number of successful extensions: 4875
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4826
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6365071885
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)