Planarian EST Database

DrC_01112

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_01112 AGATACCAAAACCGAAAGAAAAAGGGAATCAAGATGGGAATCATCAAAGATTTCTAAAGA AATAAAAGTTGCTGATGGACAGTCGAAAGACAATGAAAAGGTTGAAGATCAAACTACGAA TTTATTCAGTGATCAATCACCTTATTGTGAGGCTGCAATGAAAAATGAAAATGAAATCCA GGAAGCCCAGAAAATTACTGATGAACATAAATTATCAATTGCTGAAAATTCTTCTGATTT GATGATCGAAACATTAGAGGTCAATATCGAATCAAATTTTGAAGAAACTATTGAAAATCT TGATAAATCTGATAATGCGGATATTATTAAATCGTCAGAAAAGAGTGAAGAAAATATTGA AATGACGGAAAGCAAAGATAAAAAACAAGGGAAGGACAAATCTCGAAAACGACACCATAG TACTGAACAAACCAAACAAGTGAAAGAAAAACGTCATAAAACAAAGTCAGGATCAAGTTC CAGTATTGCGTCGGGCGAAGAAAATCGAAAGAAAAAGCATAAACATAAAAAGTCG

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01112
         (535 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P48415|SEC16_YEAST  Multidomain vesicle coat protein            39   0.008
sp|P41891|GAR2_SCHPO  Protein gar2                                 37   0.030
sp|Q6CMM2|MAD1_KLULA  Spindle assembly checkpoint component ...    35   0.088
sp|P27571|XIST_MOUSE  X inactive-specific transcript protein       35   0.11 
sp|Q8K2H1|PPHLN_MOUSE  Periphilin 1                                34   0.20 
sp|P13830|RESA_PLAFF  Ring-infected erythrocyte surface anti...    34   0.26 
sp|Q13029|PRDM2_HUMAN  PR-domain zinc finger protein 2 (Reti...    32   0.74 
sp|Q5A649|ATG1_CANAL  Serine/threonine-protein kinase ATG1 (...    32   0.97 
sp|P53847|YNZ8_YEAST  Hypothetical 88.1 kDa protein in ATX1-...    32   0.97 
sp|Q9QZM6|NCKX1_RAT  Sodium/potassium/calcium exchanger 1 (N...    32   1.3

>sp|P48415|SEC16_YEAST Multidomain vesicle coat protein
          Length = 2195

 Score = 38.9 bits (89), Expect = 0.008
 Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
 Frame = +2

Query: 35  WESSKISKEIKVADGQSKDNEKVEDQTTNLFSDQSPYCE------AAMKNENEIQEAQKI 196
           WES+      K AD  SK  EK ED      +D+    E      ++ K EN +Q + + 
Sbjct: 448 WESTD-----KNADVTSKSQEKHEDLFAASGNDEKLPWEVSDGEVSSGKTENSMQTSTEK 502

Query: 197 TDEHKLSIAENSSDLMIETLEVNIESNFEETIENLDKSDN 316
             E K S  EN  DL+ +       S  E+T+ N D + N
Sbjct: 503 IAEQKFSFLENDDDLLDDDDSFLASSEEEDTVPNTDNTTN 542

>sp|P41891|GAR2_SCHPO Protein gar2
          Length = 500

 Score = 37.0 bits (84), Expect = 0.030
 Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
 Frame = +2

Query: 8   KTERKRESRWESSKISKEIKVADGQSKDNEKVE---DQTTNLFSDQSPYCEAAMKNENEI 178
           KTE K+ES  ESS  S+  +  +   K  EK E   D ++   S +S    ++ ++E E 
Sbjct: 129 KTEEKKESSSESSSSSESEEEEEAVVKIEEKKESSSDSSSESSSSESESESSSSESEEEE 188

Query: 179 QEAQKITDEHKLSIAENSSDLMIETLEVNIESNFEETIENLDKSDNAD 322
           +  +K T+E K   +E+SSD          ES+ + + E+ D   ++D
Sbjct: 189 EVVEK-TEEKKEGSSESSSD---------SESSSDSSSESGDSDSSSD 226

>sp|Q6CMM2|MAD1_KLULA Spindle assembly checkpoint component MAD1 (Mitotic arrest
           deficient protein 1)
          Length = 648

 Score = 35.4 bits (80), Expect = 0.088
 Identities = 23/80 (28%), Positives = 43/80 (53%)
 Frame = +2

Query: 38  ESSKISKEIKVADGQSKDNEKVEDQTTNLFSDQSPYCEAAMKNENEIQEAQKITDEHKLS 217
           E+ K+ +E+K  D   K++EK+    T L +        ++KNE  ++E + +   HKLS
Sbjct: 76  ENIKLKEELKSKDALPKEDEKI---ITTLRTQV-----VSLKNEVNLKEQRIVELAHKLS 127

Query: 218 IAENSSDLMIETLEVNIESN 277
             +N     IE++++ IE +
Sbjct: 128 SKQNEVTNAIESMKLEIEGS 147

>sp|P27571|XIST_MOUSE X inactive-specific transcript protein
          Length = 298

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -3

Query: 470 LTLFYDVFLSLV-WFVQYYGVVFEICPSLVFYLCFPSFQYFL 348
           L+LF  VF+SL  W++ Y  ++  +C  L FYL   SF + L
Sbjct: 214 LSLFSFVFVSLCYWWISYLSIILLLCVCLCFYLLLSSFLFTL 255

>sp|Q8K2H1|PPHLN_MOUSE Periphilin 1
          Length = 381

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
 Frame = +2

Query: 14  ERKRESRWESSKISKEIKVADGQSKDNEKVED-------QTTNLFSDQSPYCEAAMKNEN 172
           ER R   +  S+  K  +V     + NE +         Q+     D SP   +A+ +  
Sbjct: 171 ERSRTHSFHQSQHRKSSRVGASYKRQNEAIRGRGKERSIQSVKTSRDASPSSSSAVASSK 230

Query: 173 EIQEAQKITDEHKLSIAENSSDLMIETLEVNIESNFEETIE 295
            + +  ++T++    +AE  S    ETLE + ESN  E  E
Sbjct: 231 ALDKPSRLTEKE---LAEAESKWANETLEKSDESNLAEMNE 268

>sp|P13830|RESA_PLAFF Ring-infected erythrocyte surface antigen precursor
          Length = 1073

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 22/103 (21%), Positives = 45/103 (43%)
 Frame = +2

Query: 2    DTKTERKRESRWESSKISKEIKVADGQSKDNEKVEDQTTNLFSDQSPYCEAAMKNENEIQ 181
            +   E   E+  E+ + + E  V + +    E VE+       +           EN  +
Sbjct: 937  EENVEEVEENVEENVEENVEENVEEVEENVEENVEENVEENVEENVEENVEENVEENVEE 996

Query: 182  EAQKITDEHKLSIAENSSDLMIETLEVNIESNFEETIENLDKS 310
              ++  +E+   + EN  + + E +E N+E N EE  EN++++
Sbjct: 997  NVEEYDEENVEEVEENVEENVEENVEENVEENVEEVEENVEEN 1039

>sp|Q13029|PRDM2_HUMAN PR-domain zinc finger protein 2 (Retinoblastoma protein-interacting
           zinc-finger protein) (Zinc finger protein RIZ)
           (MTE-binding protein) (MTB-ZF) (GATA-3 binding protein
           G3B)
          Length = 1718

 Score = 32.3 bits (72), Expect = 0.74
 Identities = 23/82 (28%), Positives = 39/82 (47%)
 Frame = +2

Query: 14  ERKRESRWESSKISKEIKVADGQSKDNEKVEDQTTNLFSDQSPYCEAAMKNENEIQEAQK 193
           ER   +  E + + +E +  + + +D E+ ED   +   D+    EA+M NEN ++E + 
Sbjct: 254 ERLEAAACEVNDLGEEEE--EEEEEDEEEEEDDDDDELEDEGEE-EASMPNENSVKEPEI 310

Query: 194 ITDEHKLSIAENSSDLMIETLE 259
             DE    + E       ETLE
Sbjct: 311 RCDEKPEDLLEEPKTTSEETLE 332

>sp|Q5A649|ATG1_CANAL Serine/threonine-protein kinase ATG1 (Autophagy-related protein 1)
          Length = 834

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
 Frame = +2

Query: 152 AAMKNENEIQEAQKIT----DEHKLSIAENSSDLMIETLEVNIESNF 280
           A  + +N +Q+  KIT    D+  LSIA NSS+  ++  ++N+E ++
Sbjct: 413 ATPRQDNVVQQMTKITSPVPDDFALSIARNSSEFNLKKDDMNLEKDY 459

>sp|P53847|YNZ8_YEAST Hypothetical 88.1 kDa protein in ATX1-SIP3 intergenic region
          Length = 754

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 16/76 (21%), Positives = 39/76 (51%)
 Frame = +2

Query: 80  QSKDNEKVEDQTTNLFSDQSPYCEAAMKNENEIQEAQKITDEHKLSIAENSSDLMIETLE 259
           Q+ +  ++    TN  S++    ++ ++NE E+  A    D+    + ++ +D   + ++
Sbjct: 371 QNLEVVELTTSNTNTMSEKIGKNDSDVQNEKELHNAVSKDDDWNWEVEDDDADAWGDEID 430

Query: 260 VNIESNFEETIENLDK 307
           VNI+   E+T +  +K
Sbjct: 431 VNIDDEEEKTNQEKEK 446

>sp|Q9QZM6|NCKX1_RAT Sodium/potassium/calcium exchanger 1 (Na(+)/K(+)/Ca(2+)-exchange
            protein 1) (Retinal rod Na-Ca+K exchanger)
          Length = 1181

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 24/107 (22%), Positives = 45/107 (42%)
 Frame = +2

Query: 2    DTKTERKRESRWESSKISKEIKVADGQSKDNEKVEDQTTNLFSDQSPYCEAAMKNENEIQ 181
            +T+ ERK  +    ++       A+G+  D+E   +   N+        E  +++E E +
Sbjct: 844  ETEAERKETNHEGETE-------AEGKEADHEGETEAEGNVEHQGETEAEGKVEHEGETE 896

Query: 182  EAQKITDEHKLSIAENSSDLMIETLEVNIESNFEETIENLDKSDNAD 322
              +K  DEH+      + D  ++  E   E+N E+  E       AD
Sbjct: 897  AGEK--DEHEGQSETQADDTEVKDGEGEAEANAEDQCETAQGEKGAD 941

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,840,946
Number of Sequences: 369166
Number of extensions: 661443
Number of successful extensions: 2375
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2367
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3650218350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01112

Planaria EST Database

DrC_01112

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail