Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_G20
(441 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P27571|XIST_MOUSE X inactive-specific transcript protein 35 0.055
sp|P48415|SEC16_YEAST Multidomain vesicle coat protein 33 0.36
sp|P13830|RESA_PLAFF Ring-infected erythrocyte surface anti... 32 0.61
sp|Q5A649|ATG1_CANAL Serine/threonine-protein kinase ATG1 (... 32 0.61
sp|Q26005|RESA_PLAFP Ring-infected erythrocyte surface antigen 32 0.80
sp|P53847|YNZ8_YEAST Hypothetical 88.1 kDa protein in ATX1-... 30 2.3
sp|Q8D2Q5|DNAK_WIGBR Chaperone protein dnaK (Heat shock pro... 30 3.0
sp|Q7VRE8|DAPD_BLOFL 2,3,4,5-tetrahydropyridine-2,6-dicarbo... 29 4.0
sp|Q09299|YQOA_CAEEL Hypothetical protein EEED8.10 in chrom... 29 4.0
sp|O67303|YC64_AQUAE Hypothetical protein AQ_1264 29 4.0
>sp|P27571|XIST_MOUSE X inactive-specific transcript protein
Length = 298
Score = 35.4 bits (80), Expect = 0.055
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -3
Query: 376 LTLFYDVFLSLA-WFVQYYGVVFEICPSLVFYLCFPSFQYFL 254
L+LF VF+SL W++ Y ++ +C L FYL SF + L
Sbjct: 214 LSLFSFVFVSLCYWWISYLSIILLLCVCLCFYLLLSSFLFTL 255
>sp|P48415|SEC16_YEAST Multidomain vesicle coat protein
Length = 2195
Score = 32.7 bits (73), Expect = 0.36
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +1
Query: 67 KNENEIQEAQKITDEHKLSIAENSSDLMIETLEVNIESNFEETIENLDKSDN 222
K EN +Q + + E K S EN DL+ + S E+T+ N D + N
Sbjct: 491 KTENSMQTSTEKIAEQKFSFLENDDDLLDDDDSFLASSEEEDTVPNTDNTTN 542
>sp|P13830|RESA_PLAFF Ring-infected erythrocyte surface antigen precursor
Length = 1073
Score = 32.0 bits (71), Expect = 0.61
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +1
Query: 73 ENEIQEAQKITDEHKLSIAENSSDLMIETLEVNIESNFEETIENLDKS 216
EN + ++ +E+ + EN + + E +E N+E N EE EN++++
Sbjct: 992 ENVEENVEEYDEENVEEVEENVEENVEENVEENVEENVEEVEENVEEN 1039
>sp|Q5A649|ATG1_CANAL Serine/threonine-protein kinase ATG1 (Autophagy-related protein 1)
Length = 834
Score = 32.0 bits (71), Expect = 0.61
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Frame = +1
Query: 58 AVMKNENEIQEAQKIT----DEHKLSIAENSSDLMIETLEVNIESNF 186
A + +N +Q+ KIT D+ LSIA NSS+ ++ ++N+E ++
Sbjct: 413 ATPRQDNVVQQMTKITSPVPDDFALSIARNSSEFNLKKDDMNLEKDY 459
>sp|Q26005|RESA_PLAFP Ring-infected erythrocyte surface antigen
Length = 304
Score = 31.6 bits (70), Expect = 0.80
Identities = 13/48 (27%), Positives = 29/48 (60%)
Frame = +1
Query: 73 ENEIQEAQKITDEHKLSIAENSSDLMIETLEVNIESNFEETIENLDKS 216
EN + +++ + + ++ EN + + E +E N+E N EE EN++++
Sbjct: 167 ENVEENVEEVEENVEENVEENVEENVEENVEENVEENVEEVEENVEEN 214
>sp|P53847|YNZ8_YEAST Hypothetical 88.1 kDa protein in ATX1-SIP3 intergenic region
Length = 754
Score = 30.0 bits (66), Expect = 2.3
Identities = 15/64 (23%), Positives = 33/64 (51%)
Frame = +1
Query: 22 TNLFSDLSPYCEAVMKNENEIQEAQKITDEHKLSIAENSSDLMIETLEVNIESNFEETIE 201
TN S+ ++ ++NE E+ A D+ + ++ +D + ++VNI+ E+T +
Sbjct: 383 TNTMSEKIGKNDSDVQNEKELHNAVSKDDDWNWEVEDDDADAWGDEIDVNIDDEEEKTNQ 442
Query: 202 NLDK 213
+K
Sbjct: 443 EKEK 446
>sp|Q8D2Q5|DNAK_WIGBR Chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa
protein) (HSP70)
Length = 645
Score = 29.6 bits (65), Expect = 3.0
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +1
Query: 67 KNENEIQEAQKITDEHKLSIAENSSDLMIETLEVNIESN--FEETIENLDKSDN 222
K++N +E QKIT + ++EN D M++ E N E + FEE ++ +++D+
Sbjct: 493 KDKNSGRE-QKITIKASSGLSENEIDKMLKESEANAELDIKFEELVKTKNQADH 545
>sp|Q7VRE8|DAPD_BLOFL 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
(Tetrahydrodipicolinate N-succinyltransferase) (THP
succinyltransferase) (Tetrahydropicolinate succinylase)
Length = 280
Score = 29.3 bits (64), Expect = 4.0
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +1
Query: 70 NENEIQEAQKITDEHKLSIAENSSDLMIETLEVNIESNFEETIENLD 210
NEN IQ+ QKI EH +N S +++N+ + +E I+NL+
Sbjct: 2 NENNIQKLQKII-EHYFIKQQNISK---NNIDLNLRNTVQEVIDNLN 44
>sp|Q09299|YQOA_CAEEL Hypothetical protein EEED8.10 in chromosome II
Length = 362
Score = 29.3 bits (64), Expect = 4.0
Identities = 19/44 (43%), Positives = 21/44 (47%)
Frame = +1
Query: 31 FSDLSPYCEAVMKNENEIQEAQKITDEHKLSIAENSSDLMIETL 162
F DL C + E I E KITDE+ IA DL I TL
Sbjct: 59 FEDLCTSCGGL--KELRINECYKITDENLSMIARRMEDLSILTL 100
>sp|O67303|YC64_AQUAE Hypothetical protein AQ_1264
Length = 306
Score = 29.3 bits (64), Expect = 4.0
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = -3
Query: 436 FYVYAFSFDFLRPTQYWNLILTLFYDVFL---SLAWFVQYYGVVFEICPSLVFYLCFPSF 266
FY F P +Y L++ L + L S +F++Y+G F L FYL F
Sbjct: 229 FYFALAHFLLFIPLKYKALLMVLLILIPLTETSAGFFIRYFGESFVYLKLLSFYLMI--F 286
Query: 265 QYFLHSFLTI 236
FL +FL I
Sbjct: 287 ITFLSAFLLI 296
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.299 0.117 0.297
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,030,469
Number of Sequences: 369166
Number of extensions: 511504
Number of successful extensions: 931
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2294548080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)