DrC_01109
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_01109 (581 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P63303|SEPW1_MACMU Selenoprotein W >gi|54039597|sp|P6330... 41 0.002 sp|P63301|SEPW1_RAT Selenoprotein W >gi|54039596|sp|P63300|... 37 0.036 sp|Q95KL4|SEPW1_PIG Selenoprotein W 37 0.047 sp|O19097|SEPW1_SHEEP Selenoprotein W 32 0.88 sp|Q9VMV6|SELT_DROME SelT-like protein precursor 32 1.5 sp|P62341|SELT_HUMAN Selenoprotein T precursor 32 1.5 sp|P62342|SELT_MOUSE Selenoprotein T precursor 32 1.5 sp|Q14517|FATH_HUMAN Cadherin-related tumor suppressor homo... 30 4.4
>sp|P63303|SEPW1_MACMU Selenoprotein W sp|P63302|SEPW1_HUMAN Selenoprotein W Length = 87 Score = 40.8 bits (94), Expect = 0.002 Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 4/81 (4%) Frame = +1 Query: 52 SLKVHVEYCGA*GYSSKYASFKNSINDEVTG---IQWSYEVGRSTSFEVTVNDCLVFSKL 222 +L V V YCGA GY SKY K + DE G I + FEV V L+ SK Sbjct: 2 ALAVRVVYCGACGYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSKK 61 Query: 223 KCGGFPVVED-VIKLLRDVQA 282 K G+ E +KL+ ++A Sbjct: 62 KGDGYVDTESKFLKLVAAIKA 82
>sp|P63301|SEPW1_RAT Selenoprotein W sp|P63300|SEPW1_MOUSE Selenoprotein W Length = 88 Score = 37.0 bits (84), Expect = 0.036 Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 3/75 (4%) Frame = +1 Query: 52 SLKVHVEYCGA*GYSSKYASFKNSINDEVTGIQWSYEVGR---STSFEVTVNDCLVFSKL 222 +L V V YCGA GY KY K + E G G + FEVTV LV SK Sbjct: 2 ALAVRVVYCGACGYKPKYLQLKEKLEHEFPGCLDICGEGTPQVTGFFEVTVAGKLVHSKK 61 Query: 223 KCGGFPVVEDVIKLL 267 + G+ E + L Sbjct: 62 RGDGYVDTESKFRKL 76
>sp|Q95KL4|SEPW1_PIG Selenoprotein W Length = 87 Score = 36.6 bits (83), Expect = 0.047 Identities = 31/77 (40%), Positives = 35/77 (45%), Gaps = 3/77 (3%) Frame = +1 Query: 61 VHVEYCGA*GYSSKYASFKNSINDEVTG---IQWSYEVGRSTSFEVTVNDCLVFSKLKCG 231 V V YCGA GY SKY K + DE G I + FEV V LV SK G Sbjct: 5 VRVVYCGACGYKSKYLQLKKKLEDEFPGRLDICGEGTPQVTGFFEVLVAGKLVHSKK--G 62 Query: 232 GFPVVEDVIKLLRDVQA 282 G V+ K L+ V A Sbjct: 63 GDGYVDTESKFLKLVAA 79
>sp|O19097|SEPW1_SHEEP Selenoprotein W Length = 87 Score = 32.3 bits (72), Expect = 0.88 Identities = 30/80 (37%), Positives = 34/80 (42%), Gaps = 6/80 (7%) Frame = +1 Query: 61 VHVEYCGA*GYSSKYASFKNSINDE------VTGIQWSYEVGRSTSFEVTVNDCLVFSKL 222 V V YCGA GY KY K + DE + G G FEV V LV SK Sbjct: 5 VRVVYCGACGYKPKYLQLKKKLEDEFPSRLDICGEGTPQVTG---FFEVFVAGKLVHSKK 61 Query: 223 KCGGFPVVEDVIKLLRDVQA 282 GG V+ K L+ V A Sbjct: 62 --GGDGYVDTESKFLKLVAA 79
>sp|Q9VMV6|SELT_DROME SelT-like protein precursor Length = 198 Score = 31.6 bits (70), Expect = 1.5 Identities = 14/32 (43%), Positives = 23/32 (71%) Frame = +1 Query: 172 STSFEVTVNDCLVFSKLKCGGFPVVEDVIKLL 267 S +FE+T+ND V+SKL+ G FP E + +++ Sbjct: 149 SGAFEITLNDVPVWSKLQTGRFPSPEVLFQII 180
>sp|P62341|SELT_HUMAN Selenoprotein T precursor Length = 195 Score = 31.6 bits (70), Expect = 1.5 Identities = 12/30 (40%), Positives = 23/30 (76%) Frame = +1 Query: 178 SFEVTVNDCLVFSKLKCGGFPVVEDVIKLL 267 +FE+T+ND V+SKL+ G P ++ ++++L Sbjct: 148 AFEITLNDVPVWSKLESGHLPSMQQLVQIL 177
>sp|P62342|SELT_MOUSE Selenoprotein T precursor Length = 195 Score = 31.6 bits (70), Expect = 1.5 Identities = 12/30 (40%), Positives = 23/30 (76%) Frame = +1 Query: 178 SFEVTVNDCLVFSKLKCGGFPVVEDVIKLL 267 +FE+T+ND V+SKL+ G P ++ ++++L Sbjct: 148 AFEITLNDVPVWSKLESGHLPSMQQLVQIL 177
>sp|Q14517|FATH_HUMAN Cadherin-related tumor suppressor homolog precursor (Fat protein homolog) Length = 4590 Score = 30.0 bits (66), Expect = 4.4 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Frame = -1 Query: 314 LQVVNK*GFSPAWTSRNNLITSSTTGNPPHFSFENTKQSL-TVTSNEVDRPTS*LH*IPV 138 + VV F P +S + L+ T+GNP F + K L T TS ++DR H + V Sbjct: 1156 VSVVQIEAFDPDSSSNDKLMYKITSGNPQGFFSIHPKTGLITTTSRKLDREQQDEHILEV 1215 Query: 137 T 135 T Sbjct: 1216 T 1216
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,019,867
Number of Sequences: 369166
Number of extensions: 1215820
Number of successful extensions: 3508
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3508
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4308286840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
