Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_H19
(352 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q14517|FATH_HUMAN Cadherin-related tumor suppressor homo... 33 0.20
sp|Q9JZ55|KDSA_NEIMB 2-dehydro-3-deoxyphosphooctonate aldol... 30 1.3
sp|Q9JU48|KDSA_NEIMA 2-dehydro-3-deoxyphosphooctonate aldol... 30 1.3
sp|Q02574|MEC3_YEAST Checkpoint protein MEC3 30 1.3
sp|Q10475|IF4G_SCHPO Eukaryotic translation initiation fact... 29 3.8
sp|Q9VMV6|SELT_DROME SelT-like protein precursor 29 3.8
sp|P62341|SELT_HUMAN Selenoprotein T precursor 29 3.8
sp|P62342|SELT_MOUSE Selenoprotein T precursor 29 3.8
sp|Q03155|AIDA_ECOLI Adhesin AIDA-I precursor (AIDA-I autot... 28 5.0
sp|P27363|KITH_PRVN3 Thymidine kinase 28 5.0
>sp|Q14517|FATH_HUMAN Cadherin-related tumor suppressor homolog precursor (Fat protein
homolog)
Length = 4590
Score = 33.1 bits (74), Expect = 0.20
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -3
Query: 215 LQVVNK*GFSPAWTSRNNLITSSTTGNPPHFSFENPKQSL-TVTSNEVDRPTS*LH*IPV 39
+ VV F P +S + L+ T+GNP F +PK L T TS ++DR H + V
Sbjct: 1156 VSVVQIEAFDPDSSSNDKLMYKITSGNPQGFFSIHPKTGLITTTSRKLDREQQDEHILEV 1215
Query: 38 T 36
T
Sbjct: 1216 T 1216
>sp|Q9JZ55|KDSA_NEIMB 2-dehydro-3-deoxyphosphooctonate aldolase
(Phospho-2-dehydro-3-deoxyoctonate aldolase)
(3-deoxy-D-manno-octulosonic acid 8-phosphate
synthetase) (KDO-8-phosphate synthetase) (KDO 8-P
synthase) (KDOPS)
Length = 280
Score = 30.4 bits (67), Expect = 1.3
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 61 EVGRSTSFEVTVNDCLGFSKLK--CGGFPVVEDVIKLLRDVQAG 186
E G S ++ V D LGF +K CG PV+ DV L+ AG
Sbjct: 164 ERGSSFGYDNLVVDMLGFGVMKQTCGNLPVIFDVTHSLQTRDAG 207
>sp|Q9JU48|KDSA_NEIMA 2-dehydro-3-deoxyphosphooctonate aldolase
(Phospho-2-dehydro-3-deoxyoctonate aldolase)
(3-deoxy-D-manno-octulosonic acid 8-phosphate
synthetase) (KDO-8-phosphate synthetase) (KDO 8-P
synthase) (KDOPS)
Length = 280
Score = 30.4 bits (67), Expect = 1.3
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 61 EVGRSTSFEVTVNDCLGFSKLK--CGGFPVVEDVIKLLRDVQAG 186
E G S ++ V D LGF +K CG PV+ DV L+ AG
Sbjct: 164 ERGSSFGYDNLVVDILGFGVMKQTCGNLPVIFDVTHSLQTRDAG 207
>sp|Q02574|MEC3_YEAST Checkpoint protein MEC3
Length = 474
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/72 (20%), Positives = 33/72 (45%)
Frame = -3
Query: 290 TAKLSSTTIIMVYSDYYNITHE*GALQVVNK*GFSPAWTSRNNLITSSTTGNPPHFSFEN 111
T + + +++ V+ Y + ++ + ++ K P W + N ++ T G S N
Sbjct: 92 TMECNCDSLLSVFKRYDRVMNQGSSSNMIIKLQSMPEWNTNNGTLSGGTAGGVDTTSKPN 151
Query: 110 PKQSLTVTSNEV 75
P +L +T E+
Sbjct: 152 PICALGITFEEI 163
>sp|Q10475|IF4G_SCHPO Eukaryotic translation initiation factor 4 gamma (eIF-4-gamma)
(eIF-4G)
Length = 1403
Score = 28.9 bits (63), Expect = 3.8
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = -3
Query: 203 NK*GFSPAWTSRNNLITSSTTGNPPHFSFENP---KQSLTVTSNEVDRPTS 60
NK G S +++S++ + SS T NPPH E P K + T+ + RPT+
Sbjct: 188 NKSGVS-SYSSKSQSVNSSVTSNPPH--TEEPVAAKPEASSTATKGPRPTT 235
>sp|Q9VMV6|SELT_DROME SelT-like protein precursor
Length = 198
Score = 28.9 bits (63), Expect = 3.8
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +1
Query: 73 STSFEVTVNDCLGFSKLKCGGFPVVEDVIKLL 168
S +FE+T+ND +SKL+ G FP E + +++
Sbjct: 149 SGAFEITLNDVPVWSKLQTGRFPSPEVLFQII 180
>sp|P62341|SELT_HUMAN Selenoprotein T precursor
Length = 195
Score = 28.9 bits (63), Expect = 3.8
Identities = 11/30 (36%), Positives = 22/30 (73%)
Frame = +1
Query: 79 SFEVTVNDCLGFSKLKCGGFPVVEDVIKLL 168
+FE+T+ND +SKL+ G P ++ ++++L
Sbjct: 148 AFEITLNDVPVWSKLESGHLPSMQQLVQIL 177
>sp|P62342|SELT_MOUSE Selenoprotein T precursor
Length = 195
Score = 28.9 bits (63), Expect = 3.8
Identities = 11/30 (36%), Positives = 22/30 (73%)
Frame = +1
Query: 79 SFEVTVNDCLGFSKLKCGGFPVVEDVIKLL 168
+FE+T+ND +SKL+ G P ++ ++++L
Sbjct: 148 AFEITLNDVPVWSKLESGHLPSMQQLVQIL 177
>sp|Q03155|AIDA_ECOLI Adhesin AIDA-I precursor (AIDA-I autotransporter) (AIDA)
Length = 1286
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +1
Query: 43 GIQWSYEVGRSTSFEVTVNDCLGFSKLKCGGFPVVEDVIKLLRDVQAGEKPY 198
G Q+ Y G +T+ V + GF ++ GG V++ + + R V + KP+
Sbjct: 423 GNQYIYSDGEATAAIVNTS---GFQRINSGGTAPVQNSVVVTRTVSSAAKPF 471
>sp|P27363|KITH_PRVN3 Thymidine kinase
Length = 320
Score = 28.5 bits (62), Expect = 5.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 4 YASFKNSINDEVTGIQWSYEVGRSTSFEVTVNDCLGFSKL 123
YA N+ +G +W + GR+ F+ T DCL ++L
Sbjct: 185 YAMLVNTSRYLSSGRRWRDDWGRAPRFDQTTRDCLALNEL 224
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,467,835
Number of Sequences: 369166
Number of extensions: 796336
Number of successful extensions: 2667
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2666
length of database: 68,354,980
effective HSP length: 84
effective length of database: 52,837,240
effective search space used: 1690791680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)