Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_M14
(543 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P63303|SEPW1_MACMU Selenoprotein W >gi|54039597|sp|P6330... 41 0.002
sp|P63301|SEPW1_RAT Selenoprotein W >gi|54039596|sp|P63300|... 37 0.031
sp|Q95KL4|SEPW1_PIG Selenoprotein W 37 0.040
sp|O19097|SEPW1_SHEEP Selenoprotein W 32 0.76
sp|Q9VMV6|SELT_DROME SelT-like protein precursor 32 1.3
sp|P62341|SELT_HUMAN Selenoprotein T precursor 32 1.3
sp|P62342|SELT_MOUSE Selenoprotein T precursor 32 1.3
sp|Q14517|FATH_HUMAN Cadherin-related tumor suppressor homo... 30 3.8
>sp|P63303|SEPW1_MACMU Selenoprotein W
sp|P63302|SEPW1_HUMAN Selenoprotein W
Length = 87
Score = 40.8 bits (94), Expect = 0.002
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Frame = +2
Query: 14 SLKVHVEYCGA*GYSSKYASFKNSINDEVTG---IQWSYEVGRSTSFEVTVNDCLVFSKL 184
+L V V YCGA GY SKY K + DE G I + FEV V L+ SK
Sbjct: 2 ALAVRVVYCGACGYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSKK 61
Query: 185 KCGGFPVVED-VIKLLRDVQA 244
K G+ E +KL+ ++A
Sbjct: 62 KGDGYVDTESKFLKLVAAIKA 82
>sp|P63301|SEPW1_RAT Selenoprotein W
sp|P63300|SEPW1_MOUSE Selenoprotein W
Length = 88
Score = 37.0 bits (84), Expect = 0.031
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = +2
Query: 14 SLKVHVEYCGA*GYSSKYASFKNSINDEVTGIQWSYEVGR---STSFEVTVNDCLVFSKL 184
+L V V YCGA GY KY K + E G G + FEVTV LV SK
Sbjct: 2 ALAVRVVYCGACGYKPKYLQLKEKLEHEFPGCLDICGEGTPQVTGFFEVTVAGKLVHSKK 61
Query: 185 KCGGFPVVEDVIKLL 229
+ G+ E + L
Sbjct: 62 RGDGYVDTESKFRKL 76
>sp|Q95KL4|SEPW1_PIG Selenoprotein W
Length = 87
Score = 36.6 bits (83), Expect = 0.040
Identities = 31/77 (40%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = +2
Query: 23 VHVEYCGA*GYSSKYASFKNSINDEVTG---IQWSYEVGRSTSFEVTVNDCLVFSKLKCG 193
V V YCGA GY SKY K + DE G I + FEV V LV SK G
Sbjct: 5 VRVVYCGACGYKSKYLQLKKKLEDEFPGRLDICGEGTPQVTGFFEVLVAGKLVHSKK--G 62
Query: 194 GFPVVEDVIKLLRDVQA 244
G V+ K L+ V A
Sbjct: 63 GDGYVDTESKFLKLVAA 79
>sp|O19097|SEPW1_SHEEP Selenoprotein W
Length = 87
Score = 32.3 bits (72), Expect = 0.76
Identities = 30/80 (37%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Frame = +2
Query: 23 VHVEYCGA*GYSSKYASFKNSINDE------VTGIQWSYEVGRSTSFEVTVNDCLVFSKL 184
V V YCGA GY KY K + DE + G G FEV V LV SK
Sbjct: 5 VRVVYCGACGYKPKYLQLKKKLEDEFPSRLDICGEGTPQVTG---FFEVFVAGKLVHSKK 61
Query: 185 KCGGFPVVEDVIKLLRDVQA 244
GG V+ K L+ V A
Sbjct: 62 --GGDGYVDTESKFLKLVAA 79
>sp|Q9VMV6|SELT_DROME SelT-like protein precursor
Length = 198
Score = 31.6 bits (70), Expect = 1.3
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +2
Query: 134 STSFEVTVNDCLVFSKLKCGGFPVVEDVIKLL 229
S +FE+T+ND V+SKL+ G FP E + +++
Sbjct: 149 SGAFEITLNDVPVWSKLQTGRFPSPEVLFQII 180
>sp|P62341|SELT_HUMAN Selenoprotein T precursor
Length = 195
Score = 31.6 bits (70), Expect = 1.3
Identities = 12/30 (40%), Positives = 23/30 (76%)
Frame = +2
Query: 140 SFEVTVNDCLVFSKLKCGGFPVVEDVIKLL 229
+FE+T+ND V+SKL+ G P ++ ++++L
Sbjct: 148 AFEITLNDVPVWSKLESGHLPSMQQLVQIL 177
>sp|P62342|SELT_MOUSE Selenoprotein T precursor
Length = 195
Score = 31.6 bits (70), Expect = 1.3
Identities = 12/30 (40%), Positives = 23/30 (76%)
Frame = +2
Query: 140 SFEVTVNDCLVFSKLKCGGFPVVEDVIKLL 229
+FE+T+ND V+SKL+ G P ++ ++++L
Sbjct: 148 AFEITLNDVPVWSKLESGHLPSMQQLVQIL 177
>sp|Q14517|FATH_HUMAN Cadherin-related tumor suppressor homolog precursor (Fat protein
homolog)
Length = 4590
Score = 30.0 bits (66), Expect = 3.8
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -1
Query: 276 LQVVNK*GFSPAWTSRNNLITSSTTGNPPHFSFENTKQSL-TVTSNEVDRPTS*LH*IPV 100
+ VV F P +S + L+ T+GNP F + K L T TS ++DR H + V
Sbjct: 1156 VSVVQIEAFDPDSSSNDKLMYKITSGNPQGFFSIHPKTGLITTTSRKLDREQQDEHILEV 1215
Query: 99 T 97
T
Sbjct: 1216 T 1216
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,607,522
Number of Sequences: 369166
Number of extensions: 1143367
Number of successful extensions: 3426
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3426
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3734833040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)