DrC_01107
- Cluster detail
- GO Category :
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_01107 (1460 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q06155|VAP1_STRPU Vesicle-associated protein (VAP-1) 110 8e-24 sp||Q09666_2 [Segment 2 of 2] Neuroblast differentiation-as... 91 1e-17 sp||Q09666_1 [Segment 1 of 2] Neuroblast differentiation-as... 89 3e-17 sp|Q60754|MTCO_MOUSE Macrophage receptor MARCO (Macrophage ... 47 1e-04 sp|O42350|CO1A2_RANCA Collagen alpha 2(I) chain precursor 46 2e-04 sp|Q61245|COBA1_MOUSE Collagen alpha 1(XI) chain precursor 45 4e-04 sp|Q28083|COBA1_BOVIN Collagen alpha 1(XI) chain precursor 45 4e-04 sp|P12107|CA1B_HUMAN Collagen alpha 1(XI) chain precursor 45 5e-04 sp|Q07563|COHA1_MOUSE Collagen alpha 1(XVII) chain (Bullous... 45 7e-04 sp|P20908|CA15_HUMAN Collagen alpha 1(V) chain precursor 44 0.001
>sp|Q06155|VAP1_STRPU Vesicle-associated protein (VAP-1) Length = 433 Score = 110 bits (276), Expect = 8e-24 Identities = 95/315 (30%), Positives = 133/315 (42%), Gaps = 44/315 (13%) Frame = +3 Query: 33 PKGEIDLD----LNAGADANLDIKKPHVDIDLKGPKGDIGLKGPKADIDLKGPKLDADFD 200 P G + LD + G LDI D+D+KGPK + GP D+D+ GP D D D Sbjct: 103 PSGGVGLDVGGGIGGGLGGGLDIDANGPDVDIKGPKVGGDISGP--DLDVSGP--DLDID 158 Query: 201 VDGKKK-KHGIDLGINLPSFGGKVKKPKGEIDLDLNAGADANLDIKKPHVDI-------- 353 VDGKKK K G G+ +P FG KG+ID+D A++DI++P +D+ Sbjct: 159 VDGKKKGKGGFGFGMKMPKFGFG-GHGKGDIDVD------ADVDIERPDLDVSGDADLPS 211 Query: 354 -----DLKGPIGDN-----GFNSKNADIDLKGPKGDIGLKGPKADIDLKGPKLDVDLKGX 503 D+ G IG ++ D+D+KGPK + GP D+D+ GP LD+D+ G Sbjct: 212 GGVGLDVGGGIGGGLGGGLDIDANGPDVDIKGPKVGGDISGP--DLDVSGPDLDIDVDGK 269 Query: 504 XXXXXXXXXXXXXXXXXXXXXXXXXHG------------------IDLGFNLPSFGAKMK 629 HG I + P G + Sbjct: 270 KKGKGGFGFGLKIPKFMDPTFGFGGHGKGDIDVDADGGVVIPEGDIKVKTGKPDIGGDVD 329 Query: 630 KPKGEIDLDLNAGADANIDIKKPHVDIDLKGPIGDNGFNSKIADIDLKGPKGDIGLKVPK 809 P G +DLD+ G + +DID KGP D+D+KGP+ + P Sbjct: 330 LPSGGVDLDVGGGIGGGLG---GGLDIDAKGP-----------DVDIKGPRVGGDISGPD 375 Query: 810 LDV---DLKADDFGQ 845 LDV DL D G+ Sbjct: 376 LDVSGPDLDIDGDGK 390
Score = 108 bits (271), Expect = 3e-23
Identities = 91/293 (31%), Positives = 132/293 (45%), Gaps = 31/293 (10%)
Frame = +3
Query: 51 LDLNAGADANLDIKKPHVDIDLKGPKGDIGLKGPKADIDLKGPKLDADFDVDGKKKKHGI 230
LD+ G LDI D+D+KGPK + GP D+D+ GP D D D GKK K G
Sbjct: 7 LDVGGGLRGGLDIDAKGPDVDIKGPKVGGDISGP--DLDVSGP--DLDIDGGGKKGKGGF 62
Query: 231 DLGINLPSFGGKVKKPKGEIDLDLNAGADANLDIKKPHVDI-------------DLKGPI 371
G+ +P FG KG+ID+ DA++DI++P +D+ D+ G I
Sbjct: 63 GFGLKMPKFGFG-GHGKGDIDV------DADVDIERPDLDVSGDADLPSGGVGLDVGGGI 115
Query: 372 GDN-----GFNSKNADIDLKGPKGDIGLKGPKADIDLKGPKLDVDLKGXXXXXXXXXXXX 536
G ++ D+D+KGPK + GP D+D+ GP LD+D+ G
Sbjct: 116 GGGLGGGLDIDANGPDVDIKGPKVGGDISGP--DLDVSGPDLDIDVDGKKKGKG------ 167
Query: 537 XXXXXXXXXXXXXXHGIDLGFNLPSFGAKMKKPKGEIDLDLNAGADANIDIKKPHVDI-- 710
G G +P FG KG+ID+ DA++DI++P +D+
Sbjct: 168 ---------------GFGFGMKMPKFGFG-GHGKGDIDV------DADVDIERPDLDVSG 205
Query: 711 -----------DLKGPIGDNGFNSKIADIDLKGPKGDIGLKVPKLDVDLKADD 836
D+ G IG G + DID GP D+ +K PK+ D+ D
Sbjct: 206 DADLPSGGVGLDVGGGIG-GGLGGGL-DIDANGP--DVDIKGPKVGGDISGPD 254
Score = 96.7 bits (239), Expect = 2e-19
Identities = 78/256 (30%), Positives = 114/256 (44%), Gaps = 30/256 (11%)
Frame = +3
Query: 33 PKGEIDLD----LNAGADANLDIKKPHVDIDLKGPKGDIGLKGPKADIDLKGPKLDADFD 200
P G + LD + G LDI D+D+KGPK + GP D+D+ GP D D D
Sbjct: 210 PSGGVGLDVGGGIGGGLGGGLDIDANGPDVDIKGPKVGGDISGP--DLDVSGP--DLDID 265
Query: 201 VDGKKK-KHGIDLGINLPSF----GGKVKKPKGEIDLDLNAGA----------------D 317
VDGKKK K G G+ +P F G KG+ID+D + G
Sbjct: 266 VDGKKKGKGGFGFGLKIPKFMDPTFGFGGHGKGDIDVDADGGVVIPEGDIKVKTGKPDIG 325
Query: 318 ANLDIKKPHVDIDLKGPIGDN-----GFNSKNADIDLKGPKGDIGLKGPKADIDLKGPKL 482
++D+ VD+D+ G IG ++K D+D+KGP+ + GP D+D+ GP L
Sbjct: 326 GDVDLPSGGVDLDVGGGIGGGLGGGLDIDAKGPDVDIKGPRVGGDISGP--DLDVSGPDL 383
Query: 483 DVDLKGXXXXXXXXXXXXXXXXXXXXXXXXXXHGIDLGFNLPSFGAKMKKPKGEIDLDLN 662
D+D G G G +P FG KG+ID+
Sbjct: 384 DIDGDGKKKGKG---------------------GFGFGLKMPKFGFG-GHGKGDIDV--- 418
Query: 663 AGADANIDIKKPHVDI 710
DA++DI++P +++
Sbjct: 419 ---DADVDIERPDLNV 431
Score = 57.0 bits (136), Expect = 1e-07
Identities = 67/272 (24%), Positives = 101/272 (37%), Gaps = 20/272 (7%)
Frame = +3
Query: 354 DLKGPIGDNGFNSKNADIDLKGPKGDIGLKGPKA-------DIDLKGPKLDVDLKGXXXX 512
D+ G + G DID KGP D+ +KGPK D+D+ GP LD+D G
Sbjct: 2 DIGGGLDVGGGLRGGLDIDAKGP--DVDIKGPKVGGDISGPDLDVSGPDLDIDGGGKKGK 59
Query: 513 XXXXXXXXXXXXXXXXXXXXXXHGIDLGFNLPSFGAKMKKPKGEIDLDLNAGADANIDIK 692
G G +P FG KG+ID+ DA++DI+
Sbjct: 60 G----------------------GFGFGLKMPKFGFG-GHGKGDIDV------DADVDIE 90
Query: 693 KPHVDI-------------DLKGPIGDNGFNSKIADIDLKGPKGDIGLKVPKLDVDLKAD 833
+P +D+ D+ G IG G + DID GP D+ +K PK+ D+
Sbjct: 91 RPDLDVSGDADLPSGGVGLDVGGGIG-GGLGGGL-DIDANGP--DVDIKGPKVGGDISGP 146
Query: 834 DFGQXXXXXXXXXXXXXXXXDLNAEGSKKFDKDPVHHDSSPSSGNVLSDFEVGSDSKGKP 1013
D D++ +G KK G + F G KG
Sbjct: 147 DL-----------DVSGPDLDIDVDGKKK-------GKGGFGFGMKMPKFGFGGHGKG-- 186
Query: 1014 LNKESDLSGNFKIHTPEINLGSGLNTSSDSQG 1109
+ D+ + I P++++ + S G
Sbjct: 187 ---DIDVDADVDIERPDLDVSGDADLPSGGVG 215
>sp||Q09666_2 [Segment 2 of 2] Neuroblast differentiation-associated protein AHNAK (Desmoyokin) Length = 1277 Score = 90.5 bits (223), Expect = 1e-17 Identities = 89/283 (31%), Positives = 130/283 (45%), Gaps = 36/283 (12%) Frame = +3 Query: 96 PHVDIDLKGPKGDIGLKGPKADID------------LKGPKLD-ADFDVDGKKKKHGIDL 236 P V+ DLKGP+ DI KGPK DI+ LK PK+ F + G K + G D+ Sbjct: 3 PKVEGDLKGPEADI--KGPKVDINTPDVDVHGPDWHLKMPKVKMPKFSMPGFKGE-GPDV 59 Query: 237 GINLPSFGGKVKKPKGEIDL-DLN-AGADANL---------------DIKKPHVDIDLKG 365 +NLP V PK ++D+ D+N G DA L I P +D++LKG Sbjct: 60 DVNLPKADIDVSGPKVDVDVPDVNIEGPDAKLKGPKFKMPEMSIKAPKISMPDIDLNLKG 119 Query: 366 PIGDNGFNSKNADIDLKGPKGDIGLKGPKADIDLKGPKLDVDLKG-XXXXXXXXXXXXXX 542 P D+D+ PK + LKGP+ADI KGPK+D++ Sbjct: 120 P-------KVKGDVDVTLPKVEGDLKGPEADI--KGPKVDINTPDVDVHGPDWHLKMPKV 170 Query: 543 XXXXXXXXXXXXHGIDLGFNLPSFGAKMKKPKGEIDL-DLN-AGADANIDIKKPHV-DID 713 G D+ +LP + PK ++D+ D+N G D + + K + +I+ Sbjct: 171 KMPKFSMPGFKGEGPDVDVSLPKADIDVSGPKVDVDIPDVNIEGPDPKLKVPKVKMPEIN 230 Query: 714 LKGPIGDNGFNSKIADIDLKGP--KGDIGLKVPKLDVDLKADD 836 +K P + D+DLKGP KGD + VPK++ LK + Sbjct: 231 IKAP----KISIPDVDLDLKGPKVKGDFDVSVPKVEGTLKGPE 269
Score = 86.7 bits (213), Expect = 2e-16
Identities = 105/411 (25%), Positives = 168/411 (40%), Gaps = 40/411 (9%)
Frame = +3
Query: 21 KGKKPKGEIDLDLNAGADANLDIKKPHVDID-----LKGPKGDIGLKGPK---ADIDLKG 176
KG+ P D+D+N A++D+ P VD+D ++GP D LKGPK ++ +K
Sbjct: 53 KGEGP----DVDVNL-PKADIDVSGPKVDVDVPDVNIEGP--DAKLKGPKFKMPEMSIKA 105
Query: 177 PKL---DADFDVDGKKKKHGIDLGINLPSFGGKVKKPKGEIDLDLNAGADANLDIKKPHV 347
PK+ D D ++ G K K +D + LP G +K P+ +I +DI P V
Sbjct: 106 PKISMPDIDLNLKGPKVKGDVD--VTLPKVEGDLKGPEADIK-------GPKVDINTPDV 156
Query: 348 DID-----LKGP------IGDNGFNSKNADIDLKGPKGDIGLKGPKADIDLKGPKLDVDL 494
D+ LK P GF + D+D+ PK DI + GPK D+D+ DV++
Sbjct: 157 DVHGPDWHLKMPKVKMPKFSMPGFKGEGPDVDVSLPKADIDVSGPKVDVDIP----DVNI 212
Query: 495 KGXXXXXXXXXXXXXXXXXXXXXXXXXXHGIDLGFNLPSFGAKMKKPKGEIDLDLNAGAD 674
+G ++P +K PK + D D++
Sbjct: 213 EGPDPKLKVPKVKMPEINIKAPK-----------ISIPDVDLDLKGPKVKGDFDVSV-PK 260
Query: 675 ANIDIKKPHVDIDLKGPIGD-NGFNSKIADIDLKGPKGDIG---LKVPKLDVDLKADDFG 842
+K P ++DLKGP D G ++K++ LK P +I + P +D+ LKA G
Sbjct: 261 VEGTLKGP--EVDLKGPRLDFEGPDAKLSGPSLKMPSLEISAPKVTAPDVDLHLKAPKIG 318
Query: 843 QXXXXXXXXXXXXXXXXDLNAEGSKKFDKDPVHHDSSPSSGNVLSDFEVGSDSKGK---- 1010
+++ +G K H SP D ++ K K
Sbjct: 319 --------FSGPKLEGGEVDLKGPKVEAPSLDVHMDSPDINIEGPDVKIPKFKKPKFGFG 370
Query: 1011 PLNKESDL----------SGNFKIHTPEINLGSGLNTSSDSQGGIHIAEPK 1133
P + ++D+ + TPEI++G S IH++ PK
Sbjct: 371 PKSPKADIKSPSLDVTVPEAELNLETPEISVGGKGKKSKFKMPKIHMSGPK 421
Score = 73.9 bits (180), Expect = 1e-12
Identities = 91/369 (24%), Positives = 143/369 (38%), Gaps = 18/369 (4%)
Frame = +3
Query: 21 KGKKPKGEIDLDLNAGADANLDIKKPHVDIDLKGPKGDIGLKGPKADIDLKGPKLDADFD 200
KGKK K ++ +G + KK D+++ G + D LK P D+++ GP D
Sbjct: 404 KGKKSKFKMPKIHMSGP--KIKAKKQGFDLNVPGGEIDASLKAPDVDVNIAGPDAALKVD 461
Query: 201 VDGKKKKH---------GIDLGINLPSFGGKVKKPKGEIDLDLNAGADANLDIKKPHV-- 347
V K K ++ I P F + P +++ +L A D L + HV
Sbjct: 462 VKSPKTKKTMFGKMYFPDVEFDIKSPKFKAEAPLPSPKLEGELQA-PDLELSLPAIHVEG 520
Query: 348 -DIDLKGPIGDNGFNSKNADIDLKGPKGDIGLKGPKADIDLKGPKLDVDLKGXXXXXXXX 524
DI K P K D+D+ PK + LKGPK +L P ++++
Sbjct: 521 LDIKAKAP------KVKMPDVDISVPKIEGDLKGPKVQANLGAPDINIE----------- 563
Query: 525 XXXXXXXXXXXXXXXXXXHGIDLGFNLPSFGAKMKKPKGEIDLDLNAGADANIDIKKPHV 704
G+D PSFG + P+ I D N+++K P +
Sbjct: 564 -------------------GLDAKVKTPSFG--ISAPQVSI-------PDVNVNLKGPKI 595
Query: 705 DIDLKGPIGDNGFNSKIADIDLKGPKGDI---GLKVPKLDV-DLKADDFGQXXXXXXXXX 872
KG + G D+DL+GP+ I +PK+ + +K + G
Sbjct: 596 ----KGDVPSVGLEG--PDVDLQGPEAKIKFPKFSMPKIGIPGVKMEGGGAEVHAQLPSL 649
Query: 873 XXXXXXXDLNAEGSKKFDKDP-VHHDSSPSSGNVLSDFEVGSDSKGKPLNKESDLS-GNF 1046
D+ EG K P V S S +S ++ + KG L + D S +
Sbjct: 650 EGDLRGPDVKLEGPDVSLKGPGVDLPSVNLSMPKVSGPDLDLNLKGPSLKGDLDASVPSM 709
Query: 1047 KIHTPEINL 1073
K+H P +NL
Sbjct: 710 KVHAPGLNL 718
Score = 66.6 bits (161), Expect = 2e-10
Identities = 76/294 (25%), Positives = 114/294 (38%), Gaps = 46/294 (15%)
Frame = +3
Query: 84 DIKKPHVDIDLKGPKGDIG--------LKGPKADIDLKGPKLDADFDVDGKKKKHGIDLG 239
D+K D+ LKGP D+ + GP D++LKGP L D D K G
Sbjct: 657 DVKLEGPDVSLKGPGVDLPSVNLSMPKVSGPDLDLNLKGPSLKGDLDASVPSMKVHAP-G 715
Query: 240 INLPSFGGK-------VKKPKGEIDLDLNAGA-DANLDIKKPHVDIDLKGPIGDNGFNSK 395
+NL GGK VK P + LN GA D L D+ + G I +
Sbjct: 716 LNLSGVGGKMQVGGDGVKVPGIDATTKLNVGAPDVTLRGPSLQGDLAVSGDIKCPKVSVG 775
Query: 396 NADIDLKGPKGDIGL---------------------KGPKADIDLKGPKLDVDLKGXXXX 512
D+ L+ +G I L KGP+ +LKGP +DV+LKG
Sbjct: 776 APDLSLEASEGSIKLPKMKLPQFGISTPGSDLHVNAKGPQVSGELKGPGVDVNLKGSRIS 835
Query: 513 XXXXXXXXXXXXXXXXXXXXXX-HGIDLGFNLPSFGAKMKKPKGEIDLDLNAGADAN--- 680
G +G LP G + + ++ ++G D N
Sbjct: 836 APNVDFNLEGPKVKGSLGATGEIKGPTVGGGLPGIGVQGLEGNLQMPGIKSSGCDVNLPG 895
Query: 681 IDIKKPHVDI---DLKGPI--GDNGFNSKIADIDLKGPKGDIGLKVPKLDVDLK 827
+++K P I ++KG + + GF+ DI +KGP ++ ++LK
Sbjct: 896 VNVKLPTGQISGPEIKGGLKGSEVGFHGAAPDISVKGPAFNMASPESDFGINLK 949
Score = 65.1 bits (157), Expect = 5e-10
Identities = 52/158 (32%), Positives = 78/158 (49%), Gaps = 19/158 (12%)
Frame = +3
Query: 66 GADANLDIKKPHVDIDLKGPKGDIGLKG-----PKADIDLKGPKLDADFDVDGKKKKHGI 230
G+D +++ K P V +LKGP D+ LKG P D +L+GPK+ G+ K G
Sbjct: 804 GSDLHVNAKGPQVSGELKGPGVDVNLKGSRISAPNVDFNLEGPKVKGSLGATGEIK--GP 861
Query: 231 DLGINLPSFGGKVKKPKGEIDLD--LNAGADANL----------DIKKPHVDIDLKGPIG 374
+G LP G V+ +G + + ++G D NL I P + LKG
Sbjct: 862 TVGGGLPGIG--VQGLEGNLQMPGIKSSGCDVNLPGVNVKLPTGQISGPEIKGGLKG--S 917
Query: 375 DNGFNSKNADIDLKGPKGDIGLKGPKAD--IDLKGPKL 482
+ GF+ DI +KGP + P++D I+LKGPK+
Sbjct: 918 EVGFHGAAPDISVKGPA--FNMASPESDFGINLKGPKI 953
Score = 63.9 bits (154), Expect = 1e-09
Identities = 74/286 (25%), Positives = 119/286 (41%), Gaps = 32/286 (11%)
Frame = +3
Query: 21 KGKKPKGEIDLDLNAGADANLDIKKPHVDIDLKGPKGDIGLKGPKA-------------- 158
KG KG++D + ++ + P +++ G K +G G K
Sbjct: 694 KGPSLKGDLDASV-----PSMKVHAPGLNLSGVGGKMQVGGDGVKVPGIDATTKLNVGAP 748
Query: 159 DIDLKGPKLDADFDVDGKKKKHGIDLG---INLPSFGGKVKKPKGEI----------DLD 299
D+ L+GP L D V G K + +G ++L + G +K PK ++ DL
Sbjct: 749 DVTLRGPSLQGDLAVSGDIKCPKVSVGAPDLSLEASEGSIKLPKMKLPQFGISTPGSDLH 808
Query: 300 LNA-GADANLDIKKPHVDIDLKGPIGDNGFNSKNADIDLKGPK--GDIGLKGPKADIDLK 470
+NA G + ++K P VD++LKG + ++ N D +L+GPK G +G G ++K
Sbjct: 809 VNAKGPQVSGELKGPGVDVNLKG----SRISAPNVDFNLEGPKVKGSLGATG-----EIK 859
Query: 471 GPKLDVDLKGXXXXXXXXXXXXXXXXXXXXXXXXXXHGIDLGFNLPSFGAKMKKPKGEID 650
GP + L G G D+ NLP G +K P G+I
Sbjct: 860 GPTVGGGLPGIGVQGLEGNLQMPGIKSS---------GCDV--NLP--GVNVKLPTGQIS 906
Query: 651 -LDLNAGADAN-IDIKKPHVDIDLKGPIGDNGFNSKIADIDLKGPK 782
++ G + + DI +KGP + I+LKGPK
Sbjct: 907 GPEIKGGLKGSEVGFHGAAPDISVKGPAFNMASPESDFGINLKGPK 952
Score = 41.6 bits (96), Expect = 0.006
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Frame = +3
Query: 105 DIDLKGPKGDIGLKGPKAD--IDLKGPKLDADFDVDGKKKKHGIDLG---INLPSFGGKV 269
DI +KGP + P++D I+LKGPK+ DV G I LG +++ GG+
Sbjct: 927 DISVKGPA--FNMASPESDFGINLKGPKIKGGADVSGGVSAPDISLGEGHLSVKGSGGEW 984
Query: 270 KKPKGEIDLDLNAGADA-NLDIKKPHVDIDLKGPIGDNGFNSKNADIDLKGPKGDI 434
K P+ L+L+ A L P V+ +KG G G + + + GP+G +
Sbjct: 985 KGPQVSSALNLDTSKFAGGLHFSGPKVEGGVKG--GQIGLQAPG--LSVSGPQGHL 1036
>sp||Q09666_1 [Segment 1 of 2] Neuroblast differentiation-associated protein AHNAK (Desmoyokin) Length = 1683 Score = 89.0 bits (219), Expect = 3e-17 Identities = 102/377 (27%), Positives = 154/377 (40%), Gaps = 105/377 (27%) Frame = +3 Query: 21 KGKKPKGEIDLDLNAGADANLDIKKPHVDIDLKGPKGDI--------------------- 137 KG K KG++D+ L + ++K P D+D+KGPK DI Sbjct: 1086 KGPKLKGDVDVSL---PEVEGEMKVP--DVDIKGPKVDISAPDVDVHGPDWHLKMPKVKM 1140 Query: 138 ------GLKG---------PKADIDLKGPKLDA---DFDVDG--------KKKKHGIDLG 239 G KG PKAD+D+ GPK+DA D +++G K K + + Sbjct: 1141 PKFSMPGFKGEGPEVDVKLPKADVDVSGPKMDAEVPDVNIEGPDAKLKGPKFKMPEMSIK 1200 Query: 240 ---INLPSFGGKVKKPKGEIDLDLNAGA------DANLDIKKPHVDI-----DLKGP--- 368 I++P G +K PK + D D+ ++DIK P VDI ++ GP Sbjct: 1201 PQKISIPDVGLHLKGPKMKGDYDVTVPKVEGEIKAPDVDIKGPKVDINAPDVEVHGPDWH 1260 Query: 369 ----------IGDNGFNSKNADIDLKGPKGDIGLKGPKADIDLKGPKLDV---DLKGXXX 509 GF + ++D+ PK D+G+ GPK DID+ L+ LKG Sbjct: 1261 LKMPKVKMPKFSMPGFKGEGPEVDMNLPKADLGVSGPKVDIDVPDVNLEAPEGKLKG--- 1317 Query: 510 XXXXXXXXXXXXXXXXXXXXXXXHGIDLGFNLPSFGAKMKKPKGEIDLDLNAG------A 671 H I ++P G +K PK + D+D++ Sbjct: 1318 -----------PKFKMPSMNIQTHKI----SMPDVGLNLKAPKLKTDVDVSLPKVEGDLK 1362 Query: 672 DANIDIKKPHV-----DIDLKGPIGD-NGFNSKI--------------ADIDLKGP--KG 785 ID+K P + DID++GP G G K+ D+ LKGP KG Sbjct: 1363 GPEIDVKAPKMDVNVGDIDIEGPEGKLKGPKFKMPEMHFKAPKISMPDVDLHLKGPKVKG 1422 Query: 786 DIGLKVPKLDVDLKADD 836 D+ + VPK++ ++K D Sbjct: 1423 DMDVSVPKVEGEMKVPD 1439
Score = 84.0 bits (206), Expect = 1e-15
Identities = 89/324 (27%), Positives = 140/324 (43%), Gaps = 76/324 (23%)
Frame = +3
Query: 96 PHVDIDLKGPK--GDIGLKGPKA-------DIDLKGPKLDADF-DVDGKKKKHGIDLGIN 245
P VD+DLKGPK G++ + PK D+D++GPK+D DV+G+ G+D +
Sbjct: 823 PDVDLDLKGPKMKGNVDISAPKIEGEMQVPDVDIRGPKVDIKAPDVEGQ----GLDWSLK 878
Query: 246 LPSFGGKVKKPK----------GEIDLDLNAGADANLDIKKPHVDID-----LKGPIGD- 377
+P K+K PK E+D++L A++D+ P VDI+ L+GP G
Sbjct: 879 IP----KMKMPKFSMPSLKGEGPEVDVNL---PKADVDVSGPKVDIEAPDVSLEGPEGKL 931
Query: 378 --------------NGFNSKNADIDLKGPK--GDIGLKGPKA-------DIDLKGPKLDV 488
+ + D+ LKGPK GD+ + PK D+++KGPK+D+
Sbjct: 932 KGPKFKMPEMHFKTPKISMPDVDLHLKGPKVKGDVDVSVPKVEGEMKVPDVEIKGPKMDI 991
Query: 489 DLKGXXXXXXXXXXXXXXXXXXXXXXXXXX-HGIDLGFNLPSFGAKMKKPKGEIDL-DLN 662
D G ++ NLP + PK ++++ D++
Sbjct: 992 DAPDVEVQGPDWHLKMPKMKMPKFSMPGFKGEGREVDVNLPKADIDVSGPKVDVEVPDVS 1051
Query: 663 A-GADANID---------------IKKPHVDIDLKGPI--GDNGFN-------SKIADID 767
G + + I P VD++LKGP GD + K+ D+D
Sbjct: 1052 LEGPEGKLKGPKFKMPEMHFKAPKISMPDVDLNLKGPKLKGDVDVSLPEVEGEMKVPDVD 1111
Query: 768 LKGPKGDIGLKVPKLDVDLKADDF 839
+KGPK DI DVD+ D+
Sbjct: 1112 IKGPKVDISAP----DVDVHGPDW 1131
Score = 82.0 bits (201), Expect = 4e-15
Identities = 85/316 (26%), Positives = 137/316 (43%), Gaps = 48/316 (15%)
Frame = +3
Query: 21 KGKKPKGEIDLDLNAGADANLDIKKPHVDID-----LKGPKGDIGLKGPK---ADIDLKG 176
KG+ P E+D++L A++D+ P VDI+ L+GP+G LKGPK ++ K
Sbjct: 893 KGEGP--EVDVNL---PKADVDVSGPKVDIEAPDVSLEGPEGK--LKGPKFKMPEMHFKT 945
Query: 177 PKL---DADFDVDGKKKKHGIDLGINLPSFGGKVKKPKGEIDLDLNAGADANLDIKKPHV 347
PK+ D D + G K K +D +++P G++K P EI +DI P
Sbjct: 946 PKISMPDVDLHLKGPKVKGDVD--VSVPKVEGEMKVPDVEIK-------GPKMDIDAP-- 994
Query: 348 DIDLKGP-------------IGDNGFNSKNADIDLKGPKGDIGLKGPKADIDLKGPKLDV 488
D++++GP GF + ++D+ PK DI + GPK D+++ DV
Sbjct: 995 DVEVQGPDWHLKMPKMKMPKFSMPGFKGEGREVDVNLPKADIDVSGPKVDVEVP----DV 1050
Query: 489 DLKGXXXXXXXXXXXXXXXXXXXXXXXXXXHGIDLGFNLPSFGAKMKKP--KGEIDLDL- 659
L+G H ++P +K P KG++D+ L
Sbjct: 1051 SLEG-----------PEGKLKGPKFKMPEMHFKAPKISMPDVDLNLKGPKLKGDVDVSLP 1099
Query: 660 ---NAGADANIDIKKPHVDI-----DLKGP-------------IGDNGFNSKIADIDLKG 776
++DIK P VDI D+ GP GF + ++D+K
Sbjct: 1100 EVEGEMKVPDVDIKGPKVDISAPDVDVHGPDWHLKMPKVKMPKFSMPGFKGEGPEVDVKL 1159
Query: 777 PKGDIGLKVPKLDVDL 824
PK D+ + PK+D ++
Sbjct: 1160 PKADVDVSGPKMDAEV 1175
Score = 80.1 bits (196), Expect = 1e-14
Identities = 89/286 (31%), Positives = 130/286 (45%), Gaps = 36/286 (12%)
Frame = +3
Query: 87 IKKPHVDIDLKGPK--GDIGLKGPKA-------DIDLKGPKLDADF-DVDGKKKKHGIDL 236
I P VD+ LKGPK GD+ + PK D+D+KGPK+D D DV+ H D
Sbjct: 1406 ISMPDVDLHLKGPKVKGDMDVSVPKVEGEMKVPDVDIKGPKVDIDAPDVE----VHDPDW 1461
Query: 237 GINLPSFGGKVKKPK----------GEIDLDLNAGADANLDIKKPHVD-----IDLKGPI 371
+ +P K+K PK E+D++L A++D+ P VD +D++GP
Sbjct: 1462 HLKMP----KMKMPKFSMPGFKAEGPEVDVNLRK---ADIDVSGPSVDTDAPDLDIEGPE 1514
Query: 372 GD-NGFNSKNADIDLKGPKG-----DIGLKGPK--ADIDLKGPKLDVDLKGXXXXXXXXX 527
G G K +++K PK D+ LKGPK +ID P+L+ DL+G
Sbjct: 1515 GKLKGSKFKMPKLNIKAPKVSMPDVDLNLKGPKLKGEIDASVPELEGDLRGPQVDVKGPL 1574
Query: 528 XXXXXXXXXXXXXXXXXHGIDLGFNLPSFGAKMKKPKGEI-DLDLNAGADANIDIKKPHV 704
D+ P AK+K PK ++ ++ A I P V
Sbjct: 1575 VEAEVP--------------DVDLECPD--AKLKGPKFKMPEMHFKAP-----KISMPDV 1613
Query: 705 DIDLKGP--IGDNGFNSKIADIDLKGPKGDIGLKVPKLDVDLKADD 836
D+ LKGP GD + + DL GP +G++VP DV+L+ D
Sbjct: 1614 DLHLKGPKVKGDADVSVPKLEGDLTGP--SVGVEVP--DVELECPD 1655
Score = 79.7 bits (195), Expect = 2e-14
Identities = 90/356 (25%), Positives = 137/356 (38%), Gaps = 110/356 (30%)
Frame = +3
Query: 87 IKKPHVDIDLKGPK--GDIGLKGPKA-------DIDLKGPKLDAD---FDVDGKK----- 215
I P VD+ LKGPK GD+ + PK D+++KGPK+D D +V G
Sbjct: 948 ISMPDVDLHLKGPKVKGDVDVSVPKVEGEMKVPDVEIKGPKMDIDAPDVEVQGPDWHLKM 1007
Query: 216 -------------KKHGIDLGINLPSFGGKVKKPKGEIDL-DLNA-GADANLD------- 329
K G ++ +NLP V PK ++++ D++ G + L
Sbjct: 1008 PKMKMPKFSMPGFKGEGREVDVNLPKADIDVSGPKVDVEVPDVSLEGPEGKLKGPKFKMP 1067
Query: 330 --------IKKPHVDIDLKGPI--GDNGFN-------SKNADIDLKGPKGDI-------- 434
I P VD++LKGP GD + K D+D+KGPK DI
Sbjct: 1068 EMHFKAPKISMPDVDLNLKGPKLKGDVDVSLPEVEGEMKVPDVDIKGPKVDISAPDVDVH 1127
Query: 435 -------------------GLKGPKADIDLKGPKLDVDLKGXXXXXXXXXXXXXXXXXXX 557
G KG ++D+K PK DVD+ G
Sbjct: 1128 GPDWHLKMPKVKMPKFSMPGFKGEGPEVDVKLPKADVDVSGPKMDAEVPDVNIEGPDAKL 1187
Query: 558 XXXXXXXHGIDL---GFNLPSFGAKMKKPKGEIDLDLNAG------ADANIDIKKPHVDI 710
+ + ++P G +K PK + D D+ ++DIK P VDI
Sbjct: 1188 KGPKFKMPEMSIKPQKISIPDVGLHLKGPKMKGDYDVTVPKVEGEIKAPDVDIKGPKVDI 1247
Query: 711 -----DLKGP-------------IGDNGFNSKIADIDLKGPKGDIGLKVPKLDVDL 824
++ GP GF + ++D+ PK D+G+ PK+D+D+
Sbjct: 1248 NAPDVEVHGPDWHLKMPKVKMPKFSMPGFKGEGPEVDMNLPKADLGVSGPKVDIDV 1303
Score = 79.3 bits (194), Expect = 3e-14
Identities = 83/308 (26%), Positives = 136/308 (44%), Gaps = 40/308 (12%)
Frame = +3
Query: 21 KGKKPKGEIDLDLNAGADANLDIKKPHVD-----IDLKGPKGDIGLKGPK---ADIDLKG 176
KG+ P+ +++L + AN+DI P VD + L+GP+G LKGPK ++ +
Sbjct: 765 KGEGPEFDVNL-----SKANVDISAPKVDTNAPDLSLEGPEGK--LKGPKFKMPEMHFRA 817
Query: 177 PKL---DADFDVDGKKKKHGIDLGINLPSFGGKVKKPKGEIDLDLNAGADANLDIKKPHV 347
PK+ D D D+ G K K +D I+ P G+++ P D+D+ +DIK P V
Sbjct: 818 PKMSLPDVDLDLKGPKMKGNVD--ISAPKIEGEMQVP----DVDIRG---PKVDIKAPDV 868
Query: 348 -----DIDLKGPIGDNGFNSKNADIDLKGPKGDIGLKGPKADIDLKGPKLDVDLKGXXXX 512
D LK P K + LKG ++ + PKAD+D+ GPK+D++
Sbjct: 869 EGQGLDWSLKIP---KMKMPKFSMPSLKGEGPEVDVNLPKADVDVSGPKVDIE------A 919
Query: 513 XXXXXXXXXXXXXXXXXXXXXXHGIDLGFNLPSFGAKMKKPKGEIDLDLNAG------AD 674
H ++P +K PK + D+D++
Sbjct: 920 PDVSLEGPEGKLKGPKFKMPEMHFKTPKISMPDVDLHLKGPKVKGDVDVSVPKVEGEMKV 979
Query: 675 ANIDIKKPHVDID-----LKGP-------------IGDNGFNSKIADIDLKGPKGDIGLK 800
+++IK P +DID ++GP GF + ++D+ PK DI +
Sbjct: 980 PDVEIKGPKMDIDAPDVEVQGPDWHLKMPKMKMPKFSMPGFKGEGREVDVNLPKADIDVS 1039
Query: 801 VPKLDVDL 824
PK+DV++
Sbjct: 1040 GPKVDVEV 1047
Score = 74.7 bits (182), Expect = 6e-13
Identities = 89/331 (26%), Positives = 140/331 (42%), Gaps = 57/331 (17%)
Frame = +3
Query: 21 KGKKPKGEIDLDLNAGADANLDIKKPHV--DIDLKGPKGDIGLKGPKADIDLKGPKLDA- 191
K K P I + D L++K P + D+D+ PK + LKGP +ID+K PK+D
Sbjct: 1319 KFKMPSMNIQTHKISMPDVGLNLKAPKLKTDVDVSLPKVEGDLKGP--EIDVKAPKMDVN 1376
Query: 192 --DFDVDGKKKK-----------HGIDLGINLPSFGGKVKKPKGEIDLDLNAGADA---- 320
D D++G + K H I++P +K PK + D+D++
Sbjct: 1377 VGDIDIEGPEGKLKGPKFKMPEMHFKAPKISMPDVDLHLKGPKVKGDMDVSVPKVEGEMK 1436
Query: 321 --NLDIKKPHVDID------------LKGP------IGDNGFNSKNADIDLKGPKGDIGL 440
++DIK P VDID LK P GF ++ ++D+ K DI +
Sbjct: 1437 VPDVDIKGPKVDIDAPDVEVHDPDWHLKMPKMKMPKFSMPGFKAEGPEVDVNLRKADIDV 1496
Query: 441 KGPKADIDLKGPKLDVD-----LKGXXXXXXXXXXXXXXXXXXXXXXXXXXHGI--DLGF 599
GP D D P LD++ LKG + ++
Sbjct: 1497 SGPSVDTD--APDLDIEGPEGKLKGSKFKMPKLNIKAPKVSMPDVDLNLKGPKLKGEIDA 1554
Query: 600 NLPSFGAKMKKPKGEIDLDLNAGADANIDIKKPHVDIDLKGP---IGDNGFNS-KIA--- 758
++P ++ P+ ++ L ++D++ P D LKGP + + F + KI+
Sbjct: 1555 SVPELEGDLRGPQVDVKGPLVEAEVPDVDLECP--DAKLKGPKFKMPEMHFKAPKISMPD 1612
Query: 759 -DIDLKGP--KGDIGLKVPKLDVDLKADDFG 842
D+ LKGP KGD + VPKL+ DL G
Sbjct: 1613 VDLHLKGPKVKGDADVSVPKLEGDLTGPSVG 1643
Score = 74.3 bits (181), Expect = 8e-13
Identities = 75/272 (27%), Positives = 116/272 (42%), Gaps = 37/272 (13%)
Frame = +3
Query: 87 IKKPHVDIDLKGPK--GDIGLKGPKADIDLKGPKLDADF-DVDGKKKKHGIDLG-INLPS 254
I P VD+ +KGPK G+ + PK + DLKGPK+D DV+ + + + I +P
Sbjct: 699 ISMPDVDLHMKGPKVKGEYDMTVPKLEGDLKGPKVDVSAPDVEMQGPDWNLKMPKIKMPK 758
Query: 255 FGGKVKKPKG-EIDLDLNAGADANLDIKKPHVD-----IDLKGPIGD------------- 377
F K +G E D++L+ AN+DI P VD + L+GP G
Sbjct: 759 FSMPSLKGEGPEFDVNLSK---ANVDISAPKVDTNAPDLSLEGPEGKLKGPKFKMPEMHF 815
Query: 378 --NGFNSKNADIDLKGPK--GDIGLKGPKA-------DIDLKGPKLDV---DLKGXXXXX 515
+ + D+DLKGPK G++ + PK D+D++GPK+D+ D++G
Sbjct: 816 RAPKMSLPDVDLDLKGPKMKGNVDISAPKIEGEMQVPDVDIRGPKVDIKAPDVEG----- 870
Query: 516 XXXXXXXXXXXXXXXXXXXXXHGIDLGFNLPSFGAKMKKPKGEIDLDLNAGADANIDIKK 695
G+D +P KMK PK + G + ++++ K
Sbjct: 871 ---------------------QGLDWSLKIP----KMKMPKFSMPSLKGEGPEVDVNLPK 905
Query: 696 PHVDIDLKGPIGDNGFNSKIADIDLKGPKGDI 791
AD+D+ GPK DI
Sbjct: 906 --------------------ADVDVSGPKVDI 917
Score = 73.6 bits (179), Expect = 1e-12
Identities = 84/297 (28%), Positives = 127/297 (42%), Gaps = 50/297 (16%)
Frame = +3
Query: 87 IKKPHVDIDLKGPK--GDIGLKGPKADIDLKGPKLDADF-DVDGKKKKHGIDLGINLPSF 257
I P VD+ +KG K G+ + PK + +LKGPK+D D DVD HG D + +P
Sbjct: 450 ISMPDVDLHVKGTKVKGEYDVTVPKLEGELKGPKVDIDAPDVD----VHGPDWHLKMP-- 503
Query: 258 GGKVKKPKGEIDLDLNAGADANLDIKKPHVDIDLKGPIGD---NGFNSKNADIDLKGPK- 425
K+K PK + G + +D+ P D+D+ GP D + + + LKGPK
Sbjct: 504 --KMKMPKFSVPGFKAEGPE--VDVNLPKADVDISGPKIDVTAPDVSIEEPEGKLKGPKF 559
Query: 426 --GDIGLKGPK-----ADIDLKGPKL----DVDLKGXXXXXXXXXXXXXXXXXXXXXXXX 572
++ +K PK D+ LKGP + DV +
Sbjct: 560 KMPEMNIKVPKISMPDVDLHLKGPNVKGEYDVTMPKVESEIKVPDVELKSAKMDIDVPDV 619
Query: 573 XXHGIDLGFNLPSFGAKMKKPK----------GEIDLDLNAGADANIDIKKPHV-----D 707
G D +P KMK PK E+D++L A++DI P V D
Sbjct: 620 EVQGPDWHLKMP----KMKMPKFSMPGFKAEGPEVDVNL---PKADVDISGPKVGVEVPD 672
Query: 708 IDLKGPIGD-NGFNSKIADIDLKGPK----------------GDIGLKVPKLDVDLK 827
++++GP G G K+ ++++K PK G+ + VPKL+ DLK
Sbjct: 673 VNIEGPEGKLKGPKFKMPEMNIKAPKISMPDVDLHMKGPKVKGEYDMTVPKLEGDLK 729
Score = 73.2 bits (178), Expect = 2e-12
Identities = 86/330 (26%), Positives = 142/330 (43%), Gaps = 60/330 (18%)
Frame = +3
Query: 27 KKPKGEIDLDLNAGADANLDIKK---PHVDIDLKGP--KGDIGLKGPKA-------DIDL 170
++P+G++ + N+ + K P VD+ LKGP KG+ + PK D++L
Sbjct: 548 EEPEGKLKGPKFKMPEMNIKVPKISMPDVDLHLKGPNVKGEYDVTMPKVESEIKVPDVEL 607
Query: 171 KGPKLDADF-DVDGKKKKHGIDLG-INLPSFGGKVKKPKG-EIDLDLNAGADANLDIKKP 341
K K+D D DV+ + + + + +P F K +G E+D++L A++DI P
Sbjct: 608 KSAKMDIDVPDVEVQGPDWHLKMPKMKMPKFSMPGFKAEGPEVDVNL---PKADVDISGP 664
Query: 342 HV-----DIDLKGPIGD---------------NGFNSKNADIDLKGPK--GDIGLKGPKA 455
V D++++GP G + + D+ +KGPK G+ + PK
Sbjct: 665 KVGVEVPDVNIEGPEGKLKGPKFKMPEMNIKAPKISMPDVDLHMKGPKVKGEYDMTVPKL 724
Query: 456 DIDLKGPKLDVDLKGXXXXXXXXXXXXXXXXXXXXXXXXXXHGIDLGFNLPSFGAKMKKP 635
+ DLKGPK+DV +P F K
Sbjct: 725 EGDLKGPKVDVSAPDVEMQGPDWNLKMPK------------------IKMPKFSMPSLKG 766
Query: 636 KG-EIDLDLNAGADANIDIKKPHV-----DIDLKGPIGD-NGFNSKI------------- 755
+G E D++L + AN+DI P V D+ L+GP G G K+
Sbjct: 767 EGPEFDVNL---SKANVDISAPKVDTNAPDLSLEGPEGKLKGPKFKMPEMHFRAPKMSLP 823
Query: 756 -ADIDLKGP--KGDIGLKVPKLDVDLKADD 836
D+DLKGP KG++ + PK++ +++ D
Sbjct: 824 DVDLDLKGPKMKGNVDISAPKIEGEMQVPD 853
Score = 69.7 bits (169), Expect = 2e-11
Identities = 82/313 (26%), Positives = 133/313 (42%), Gaps = 49/313 (15%)
Frame = +3
Query: 27 KKPKGEI-DLDLNAGAD---ANLDIKKPHVDIDLKGPKGDIGLKGPKADID-------LK 173
+KPK + D+DL+ G+ ++ + P V D+KGP+ + LKG + DI+ L
Sbjct: 249 QKPKISMQDVDLSLGSPKLKGDIKVSAPGVQGDVKGPQ--VALKGSRVDIETPNLEGTLT 306
Query: 174 GPKL---------------DADFDVDGKKKKHGIDLGINLPSFGGKVKKPKGEI---DLD 299
GP+L + D +V K K G+D + LP GKVK P+ ++ +D
Sbjct: 307 GPRLGSPSGKTGTCRISMSEVDLNVAAPKVKGGVD--VTLPRVEGKVKVPEVDVRGPKVD 364
Query: 300 LNA------GADANLDIKKPHVDIDLKGP-IGDNGFNSKNADIDLKGPKGDIGLKGPKA- 455
++A G + NL + K +K P G + D+ + PKGDI + GPK
Sbjct: 365 VSAPDVEAHGPEWNLKMPK------MKMPTFSTPGAKGEGPDVHMTLPKGDISISGPKVN 418
Query: 456 ----DIDLKGPKLDVDLKGXXXXXXXXXXXXXXXXXXXXXXXXXXHGI--DLGFNLPSFG 617
D++L+G L LKG + + +P
Sbjct: 419 VEAPDVNLEG--LGGKLKGPDVKLPDMSVKTPKISMPDVDLHVKGTKVKGEYDVTVPKLE 476
Query: 618 AKMKKPKGEIDLDLNAGADANIDIKKPHVDIDLKGP------IGDNGFNSKIADIDLKGP 779
++K PK +ID ++D+ P D LK P GF ++ ++D+ P
Sbjct: 477 GELKGPKVDIDA-------PDVDVHGP--DWHLKMPKMKMPKFSVPGFKAEGPEVDVNLP 527
Query: 780 KGDIGLKVPKLDV 818
K D+ + PK+DV
Sbjct: 528 KADVDISGPKIDV 540
Score = 66.2 bits (160), Expect = 2e-10
Identities = 75/295 (25%), Positives = 129/295 (43%), Gaps = 31/295 (10%)
Frame = +3
Query: 33 PKGEIDLDLNAGADANLDIKKPHVDIDLKGPKGDIGLKGPKA---DIDLKGPKL---DAD 194
PKG+I + + ++++ P V+++ G K LKGP D+ +K PK+ D D
Sbjct: 406 PKGDISI-----SGPKVNVEAPDVNLEGLGGK----LKGPDVKLPDMSVKTPKISMPDVD 456
Query: 195 FDVDGKKKKHGIDLGINLPSFGGKVKKPKGEIDL-DLNA-GADANLDIKKPHVDIDLKGP 368
V G K K D + +P G++K PK +ID D++ G D +L + K +K P
Sbjct: 457 LHVKGTKVKGEYD--VTVPKLEGELKGPKVDIDAPDVDVHGPDWHLKMPK------MKMP 508
Query: 369 -IGDNGFNSKNADIDLKGPKGDIGLKGPKADIDLKGPKLDVD-----LKGXXXXXXXXXX 530
GF ++ ++D+ PK D+ + GPK ID+ P + ++ LKG
Sbjct: 509 KFSVPGFKAEGPEVDVNLPKADVDISGPK--IDVTAPDVSIEEPEGKLKGPKFKMPEMNI 566
Query: 531 XXXXXXXXXXXXXXXXHGIDLGFNLPS----FGAKMKKPKGEIDLDLNAGADANIDIKKP 698
+DL P+ + M K + EI + A +DI P
Sbjct: 567 KVPKISMP---------DVDLHLKGPNVKGEYDVTMPKVESEIKVPDVELKSAKMDIDVP 617
Query: 699 HVDIDLKGP-------------IGDNGFNSKIADIDLKGPKGDIGLKVPKLDVDL 824
D++++GP GF ++ ++D+ PK D+ + PK+ V++
Sbjct: 618 --DVEVQGPDWHLKMPKMKMPKFSMPGFKAEGPEVDVNLPKADVDISGPKVGVEV 670
Score = 63.2 bits (152), Expect = 2e-09
Identities = 54/177 (30%), Positives = 92/177 (51%), Gaps = 20/177 (11%)
Frame = +3
Query: 24 GKKPKG-EIDLDLNAGADANLDIKKPHVD-----IDLKGPKGDI-GLKGPKADIDLKGPK 182
G K +G E+D++L A++D+ P VD +D++GP+G + G K +++K PK
Sbjct: 1477 GFKAEGPEVDVNLRK---ADIDVSGPSVDTDAPDLDIEGPEGKLKGSKFKMPKLNIKAPK 1533
Query: 183 L---DADFDVDGKKKKHGIDLGINLPSFGGKVKKPKGEIDLDLNAGADANLDIKKPHVDI 353
+ D D ++ G K K ID + P G ++ P+ ++ L ++D++ P D
Sbjct: 1534 VSMPDVDLNLKGPKLKGEIDASV--PELEGDLRGPQVDVKGPLVEAEVPDVDLECP--DA 1589
Query: 354 DLKGP---IGDNGFNSK-----NADIDLKGPK--GDIGLKGPKADIDLKGPKLDVDL 494
LKGP + + F + + D+ LKGPK GD + PK + DL GP + V++
Sbjct: 1590 KLKGPKFKMPEMHFKAPKISMPDVDLHLKGPKVKGDADVSVPKLEGDLTGPSVGVEV 1646
Score = 55.1 bits (131), Expect = 5e-07
Identities = 74/304 (24%), Positives = 121/304 (39%), Gaps = 37/304 (12%)
Frame = +3
Query: 21 KGKKPKGEIDLDLNA----GADANLDIKKPHVDIDLKGPKGDIG---LKGPKADID-LKG 176
KG KP+G I +D +A G+ ++ DID++GP + +K PK + KG
Sbjct: 140 KGAKPQGHIGVDASAPQIGGSITGPSVEVQAPDIDVQGPGSKLNVPKMKVPKFSVSGAKG 199
Query: 177 PKLDADFDVD-GKKKKHGIDLGINLPSF----------GGKVKKPKGEIDLDLNAGADAN 323
+ D + G+ G+ ++LP G KVK P+ I + D +
Sbjct: 200 EETGIDVTLPTGEVTVPGVSGDVSLPEIATGGLEGKMKGTKVKTPEMIIQKPKISMQDVD 259
Query: 324 LDIKKPHVDIDLKGPIGDNGFNSKNADIDLKGPKGDIGLKGPKADID-------LKGPKL 482
L + P + D+K ++ D+KGP+ + LKG + DI+ L GP+L
Sbjct: 260 LSLGSPKLKGDIK-------VSAPGVQGDVKGPQ--VALKGSRVDIETPNLEGTLTGPRL 310
Query: 483 DVDLKGXXXXXXXXXXXXXXXXXXXXXXXXXXHGIDLGFNLPSFGAKMKKPKGEIDLDLN 662
G G+D+ LP K+K P E+D+
Sbjct: 311 -----GSPSGKTGTCRISMSEVDLNVAAPKVKGGVDV--TLPRVEGKVKVP--EVDV--- 358
Query: 663 AGADANIDIKKPHVDI-----DLKGP------IGDNGFNSKIADIDLKGPKGDIGLKVPK 809
+D+ P V+ +LK P G + D+ + PKGDI + PK
Sbjct: 359 --RGPKVDVSAPDVEAHGPEWNLKMPKMKMPTFSTPGAKGEGPDVHMTLPKGDISISGPK 416
Query: 810 LDVD 821
++V+
Sbjct: 417 VNVE 420
Score = 38.5 bits (88), Expect = 0.050
Identities = 39/121 (32%), Positives = 51/121 (42%), Gaps = 34/121 (28%)
Frame = +3
Query: 21 KGKKPKGEIDLDL----NAGADANLDIKKPHV-----DIDLKGPKGDIGLKGPK------ 155
KG K KGEID + +D+K P V D+DL+ P D LKGPK
Sbjct: 1544 KGPKLKGEIDASVPELEGDLRGPQVDVKGPLVEAEVPDVDLECP--DAKLKGPKFKMPEM 1601
Query: 156 -----------ADIDLKGPKLDADFDVDGKKKK---HGIDLGINLPSF-----GGKVKKP 278
D+ LKGPK+ D DV K + G +G+ +P K+K P
Sbjct: 1602 HFKAPKISMPDVDLHLKGPKVKGDADVSVPKLEGDLTGPSVGVEVPDVELECPDAKLKGP 1661
Query: 279 K 281
K
Sbjct: 1662 K 1662
>sp|Q60754|MTCO_MOUSE Macrophage receptor MARCO (Macrophage receptor with collagenous structure) Length = 518 Score = 47.0 bits (110), Expect = 1e-04 Identities = 43/128 (33%), Positives = 49/128 (38%), Gaps = 3/128 (2%) Frame = +3 Query: 126 KGDIGLKGPKADIDLKG-PKLDADFDVDGKKKKHGIDLGINLPSFGGKVKKP--KGEIDL 296 KG+ G GPK G P L G+K G D P G P KGE L Sbjct: 149 KGERGSPGPKGAPGAPGIPGLPGPAAEKGEKGAAGRD---GTPGVQGPQGPPGSKGEAGL 205 Query: 297 DLNAGADANLDIKKPHVDIDLKGPIGDNGFNSKNADIDLKGPKGDIGLKGPKADIDLKGP 476 GA G G G DI L GPKG+ G KG K D+ L G Sbjct: 206 QGLTGAPGKQGAT---------GAPGPRGEKGSKGDIGLTGPKGEHGTKGDKGDLGLPGN 256 Query: 477 KLDVDLKG 500 K D+ +KG Sbjct: 257 KGDMGMKG 264
Score = 45.8 bits (107), Expect = 3e-04
Identities = 41/129 (31%), Positives = 48/129 (37%), Gaps = 13/129 (10%)
Frame = +3
Query: 105 DIDLKGPKGDIGLKGPKADIDLKGPKLDADFDVD-------------GKKKKHGIDLGIN 245
DI L GPKG+ G KG K D+ L G K D D G K G+
Sbjct: 232 DIGLTGPKGEHGTKGDKGDLGLPGNKGDMGMKGDTGPMGSPGAQGGKGDAGKPGLPGLAG 291
Query: 246 LPSFGGKVKKPKGEIDLDLNAGADANLDIKKPHVDIDLKGPIGDNGFNSKNADIDLKGPK 425
P G KP G + GA K L GP G G +KG K
Sbjct: 292 SPGVKGDQGKP-GVQGVPGPQGAPGLSGAKGEPGRTGLPGPAGPPGIAGNPGIAGVKGSK 350
Query: 426 GDIGLKGPK 452
GD G++G K
Sbjct: 351 GDTGIQGQK 359
Score = 44.3 bits (103), Expect = 0.001
Identities = 48/187 (25%), Positives = 68/187 (36%), Gaps = 31/187 (16%)
Frame = +3
Query: 33 PKGEIDLDLNAGADANLDIKKPHVDIDLKGPKGDIGLKGPKADIDLKG------------ 176
P+GE G+ ++ + P + KG KGD+GL G K D+ +KG
Sbjct: 223 PRGE------KGSKGDIGLTGPKGEHGTKGDKGDLGLPGNKGDMGMKGDTGPMGSPGAQG 276
Query: 177 ----------PKLDADFDVDGKKKKHGIDLGINLPSFGGKVKKPKGE---------IDLD 299
P L V G + K G+ G+ P + KGE
Sbjct: 277 GKGDAGKPGLPGLAGSPGVKGDQGKPGVQ-GVPGPQGAPGLSGAKGEPGRTGLPGPAGPP 335
Query: 300 LNAGADANLDIKKPHVDIDLKGPIGDNGFNSKNADIDLKGPKGDIGLKGPKADIDLKGPK 479
AG +K D ++G G G + + KG G GL GPK + G K
Sbjct: 336 GIAGNPGIAGVKGSKGDTGIQGQKGTKGESGVPGLVGRKGDTGSPGLAGPKGEPGRVGQK 395
Query: 480 LDVDLKG 500
D +KG
Sbjct: 396 GDPGMKG 402
Score = 33.9 bits (76), Expect = 1.2
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 705 DIDLKGPIGDNGFNSKIADIDLKGPKGDIGLK 800
DI L GP G++G D+ L G KGD+G+K
Sbjct: 232 DIGLTGPKGEHGTKGDKGDLGLPGNKGDMGMK 263
>sp|O42350|CO1A2_RANCA Collagen alpha 2(I) chain precursor Length = 1355 Score = 46.2 bits (108), Expect = 2e-04 Identities = 45/159 (28%), Positives = 63/159 (39%), Gaps = 7/159 (4%) Frame = +3 Query: 21 KGKK-PKGEIDLDLNAGADANLDIKKPHVDIDLKGPKGDIGLKGPKADIDLKGPKLDADF 197 +GK+ P GE ++G N I+ L GP G G GP GP Sbjct: 369 EGKRGPNGEAG---SSGPSGNAGIRGVPGTRGLPGPDGRAGGIGPAGSRGSSGPPGARGP 425 Query: 198 DVD-GKKKKHGIDLGINLPSFGGK-----VKKPKGEIDLDLNAGADANLDIKKPHVDIDL 359 + D G+ + G+ LP F G + P G ++ +GA + I Sbjct: 426 NGDAGRPGEPGLLGARGLPGFSGSNGPQGKEGPAGPQGIEGRSGAAGPAGARGEPGAIGF 485 Query: 360 KGPIGDNGFNSKNADIDLKGPKGDIGLKGPKADIDLKGP 476 GP G NG KN D +GP G+ G GP + +GP Sbjct: 486 PGPKGPNGEPGKNGDKGNQGPSGNRGAPGPDGNNGAQGP 524
Score = 35.0 bits (79), Expect = 0.55
Identities = 33/127 (25%), Positives = 43/127 (33%), Gaps = 3/127 (2%)
Frame = +3
Query: 105 DIDLKGPKGDIGLKGPKADIDLKGPK-LDADFDVDGKKKKHGIDLGINLPSFGGKVKKP- 278
D KGPKG+ G GP GP + G + G P G+ P
Sbjct: 731 DRGAKGPKGEAGSPGPLGAHGSAGPAGPNGPAGSTGARGDAGPSGATGFPGPAGRAGAPG 790
Query: 279 -KGEIDLDLNAGADANLDIKKPHVDIDLKGPIGDNGFNSKNADIDLKGPKGDIGLKGPKA 455
G + G + P D GP+G G ++ + L G KG G GP
Sbjct: 791 PPGNVGPSGPTGHPGKDGSRGPRGD---SGPVGRPGEQGQHGPVGLAGDKGPSGEAGPAG 847
Query: 456 DIDLKGP 476
GP
Sbjct: 848 PPGAAGP 854
Score = 34.3 bits (77), Expect = 0.94
Identities = 33/130 (25%), Positives = 48/130 (36%), Gaps = 3/130 (2%)
Frame = +3
Query: 120 GPKGDIGLKGPKADIDLKGPKLDADFDVDGKKKKHGIDLGINLPSFGGKVKKPKGEIDLD 299
GP G +G GP + G V+G K G LP GG P G +
Sbjct: 277 GPPGSLGPAGPPGNPGTNG--------VNGAKGTAG------LPGVGGAPGLPGGR-GIP 321
Query: 300 LNAGADANLDIKKPHVDIDLKGPIGDNGFNSKNADIDLKGP---KGDIGLKGPKADIDLK 470
AG + D + G GD G + + +GP G+ G +GP +
Sbjct: 322 GPAGPAGPSGARGLAGDPGIAGGKGDTGSKGEPGSVGQQGPAGPSGEEGKRGPNGEAGSS 381
Query: 471 GPKLDVDLKG 500
GP + ++G
Sbjct: 382 GPSGNAGIRG 391
Score = 33.1 bits (74), Expect = 2.1
Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 3/128 (2%)
Frame = +3
Query: 105 DIDLKGPKGDIGLKGPKADIDLKGPKLDADFDVDGKKKKHGIDLGINLPSFGGKVKKPKG 284
D + G KGD G KG + +GP +GK+ +G + G + PS ++ G
Sbjct: 338 DPGIAGGKGDTGSKGEPGSVGQQGPA--GPSGEEGKRGPNG-EAGSSGPSGNAGIRGVPG 394
Query: 285 EIDL---DLNAGADANLDIKKPHVDIDLKGPIGDNGFNSKNADIDLKGPKGDIGLKGPKA 455
L D AG + +GP GD G + + +G G G GP+
Sbjct: 395 TRGLPGPDGRAGGIGPAGSRGSSGPPGARGPNGDAGRPGEPGLLGARGLPGFSGSNGPQG 454
Query: 456 DIDLKGPK 479
GP+
Sbjct: 455 KEGPAGPQ 462
Score = 33.1 bits (74), Expect = 2.1
Identities = 35/128 (27%), Positives = 40/128 (31%), Gaps = 9/128 (7%)
Frame = +3
Query: 120 GPKGDIGLKGPKADIDLKGPKLDA----DFDVDGKKKKHGIDLGINLPSFGGKV-----K 272
GP G G +G KG K DA D+ G+ G P G
Sbjct: 628 GPAGIPGERGTAGTPGTKGEKGDAGNSGDYGNPGRDGARGPAGAAGAPGPAGGPGDRGES 687
Query: 273 KPKGEIDLDLNAGADANLDIKKPHVDIDLKGPIGDNGFNSKNADIDLKGPKGDIGLKGPK 452
P G + GA P GP G G D KGPKG+ G GP
Sbjct: 688 GPAGPSGVAGPRGAPGERGEAGPAGPTGFAGPPGAAGHTGAKGDRGAKGPKGEAGSPGPL 747
Query: 453 ADIDLKGP 476
GP
Sbjct: 748 GAHGSAGP 755
Score = 32.3 bits (72), Expect = 3.6
Identities = 33/122 (27%), Positives = 41/122 (33%), Gaps = 2/122 (1%)
Frame = +3
Query: 120 GPKGDIGLKGPKADIDLKGPKLDADFDVDGKKKKHGI--DLGINLPSFGGKVKKPKGEID 293
GP G G G K D KGPK +A G HG G N P+ + G
Sbjct: 718 GPPGAAGHTGAKGDRGAKGPKGEAGSP--GPLGAHGSAGPAGPNGPAGSTGARGDAGPSG 775
Query: 294 LDLNAGADANLDIKKPHVDIDLKGPIGDNGFNSKNADIDLKGPKGDIGLKGPKADIDLKG 473
G P ++ GP G G + GP G G +G + L G
Sbjct: 776 ATGFPGPAGRAGAPGPPGNVGPSGPTGHPGKDGSRGPRGDSGPVGRPGEQGQHGPVGLAG 835
Query: 474 PK 479
K
Sbjct: 836 DK 837
Score = 32.0 bits (71), Expect = 4.7
Identities = 30/120 (25%), Positives = 45/120 (37%)
Frame = +3
Query: 117 KGPKGDIGLKGPKADIDLKGPKLDADFDVDGKKKKHGIDLGINLPSFGGKVKKPKGEIDL 296
+GP G G++G K + +G + +DG+K +G+ LP G GE
Sbjct: 987 RGPAGPQGVRGDKGEAGERGAR-----GLDGRKGHNGLS---GLPGPSGT----PGE--- 1031
Query: 297 DLNAGADANLDIKKPHVDIDLKGPIGDNGFNSKNADIDLKGPKGDIGLKGPKADIDLKGP 476
G ++ P GP G G + + GP+G G GP GP
Sbjct: 1032 ---TGPSGSVGPVGPRGPSGPSGPPGKEGRSGHPGAMGPVGPRGPAGFTGPAGPPGPPGP 1088
>sp|Q61245|COBA1_MOUSE Collagen alpha 1(XI) chain precursor Length = 1804 Score = 45.4 bits (106), Expect = 4e-04 Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 3/124 (2%) Frame = +3 Query: 117 KGPKGDIGLKGPKADIDLKG-PKLDADFDVDGKKKKHGIDLGINLPSFGGKV--KKPKGE 287 +GP G G KGP+ L G P D GK+ + G + P G + P+G Sbjct: 703 QGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGV 762 Query: 288 IDLDLNAGADANLDIKKPHVDIDLKGPIGDNGFNSKNADIDLKGPKGDIGLKGPKADIDL 467 GAD +K KG G++GF D+ LKG +G++G GP+ + Sbjct: 763 ------KGADGVRGLKGS------KGEKGEDGFPGFKGDMGLKGDRGEVGQVGPRGEDGP 810 Query: 468 KGPK 479 +GPK Sbjct: 811 EGPK 814
Score = 44.7 bits (104), Expect = 7e-04
Identities = 39/147 (26%), Positives = 59/147 (40%), Gaps = 22/147 (14%)
Frame = +3
Query: 105 DIDLKGPKGDIGLKGPKADIDLKGPKLDADFDVD-------GKKKKHGIDLGINLPSFGG 263
D+ LKG +G++G GP+ + +GPK A D G+K K G+ LP + G
Sbjct: 789 DMGLKGDRGEVGQVGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVP---GLPGYPG 845
Query: 264 KVKKPKGEIDLDLNAGADANLDIKK---------------PHVDIDLKGPIGDNGFNSKN 398
+ + PKG GA+ + P +GP G G +
Sbjct: 846 R-QGPKGSTGFPGFPGANGEKGARGIAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTS 904
Query: 399 ADIDLKGPKGDIGLKGPKADIDLKGPK 479
GP G+ G +GP+ + GPK
Sbjct: 905 GGDGPPGPPGERGPQGPQGPVGFPGPK 931
Score = 42.0 bits (97), Expect = 0.005
Identities = 44/156 (28%), Positives = 62/156 (39%), Gaps = 5/156 (3%)
Frame = +3
Query: 27 KKPKGEIDLDLNAGADANLDIKKPHVDIDLKGPKGDIGLKGPKADIDLKGPKLD-ADFDV 203
K KGE D G ++ +K ++ GP+G+ G +GPK GP D
Sbjct: 772 KGSKGEKGEDGFPGFKGDMGLKGDRGEVGQVGPRGEDGPEGPKG---RAGPTGDPGPSGQ 828
Query: 204 DGKKKKHGIDLGINLPSFGGKVKKPKGEIDLDLNAGADANLDIK----KPHVDIDLKGPI 371
G+K K G+ LP + G+ + PKG GA+ + KP +GP
Sbjct: 829 AGEKGKLGVP---GLPGYPGR-QGPKGSTGFPGFPGANGEKGARGIAGKPG-PRGQRGPT 883
Query: 372 GDNGFNSKNADIDLKGPKGDIGLKGPKADIDLKGPK 479
G G GPKG G GP +GP+
Sbjct: 884 GPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQ 919
Score = 39.3 bits (90), Expect = 0.029
Identities = 34/123 (27%), Positives = 48/123 (39%), Gaps = 5/123 (4%)
Frame = +3
Query: 120 GPKGDIGLKGPKADIDLKGPKLDADFDVDGKKKKHGIDLGINLPSFGGKVKKP-----KG 284
GP+G G G K KGP+ G + G+ + LP G P KG
Sbjct: 1076 GPQGPPGPAGEKGAPGEKGPQ--------GPAGRDGVQGPVGLPGPAGPAGSPGEDGDKG 1127
Query: 285 EIDLDLNAGADANLDIKKPHVDIDLKGPIGDNGFNSKNADIDLKGPKGDIGLKGPKADID 464
EI G+ + P L+GP+G G + + GP+G G+ G K D
Sbjct: 1128 EIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGE---PGPRGQQGMFGQKGDEG 1184
Query: 465 LKG 473
+G
Sbjct: 1185 ARG 1187
Score = 38.9 bits (89), Expect = 0.038
Identities = 38/128 (29%), Positives = 49/128 (38%)
Frame = +3
Query: 117 KGPKGDIGLKGPKADIDLKGPKLDADFDVDGKKKKHGIDLGINLPSFGGKVKKPKGEIDL 296
+G G GL GP+ I G K G + K G+ LP G P G
Sbjct: 691 QGNPGSQGLPGPQGPIGPPGEK--------GPQGKPGL---AGLPGADG----PPGHPGK 735
Query: 297 DLNAGADANLDIKKPHVDIDLKGPIGDNGFNSKNADIDLKGPKGDIGLKGPKADIDLKGP 476
+ +G L P I GP G G + KG KG+ G G K D+ LKG
Sbjct: 736 EGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGD 795
Query: 477 KLDVDLKG 500
+ +V G
Sbjct: 796 RGEVGQVG 803
Score = 36.2 bits (82), Expect = 0.25
Identities = 32/123 (26%), Positives = 47/123 (38%), Gaps = 3/123 (2%)
Frame = +3
Query: 120 GPKGDIGLKGPKADIDLKGPK-LDADFDVDGKKKKHGIDLGINLPSFGGKVKKP--KGEI 290
GP G G G K +I G K D +G G+ + P G +P +G+
Sbjct: 1115 GPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQ 1174
Query: 291 DLDLNAGADANLDIKKPHVDIDLKGPIGDNGFNSKNADIDLKGPKGDIGLKGPKADIDLK 470
+ G + I L+G G G +N D+ GP G G +GP+
Sbjct: 1175 GMFGQKGDEGARGFPGLPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGAD 1234
Query: 471 GPK 479
GP+
Sbjct: 1235 GPQ 1237
Score = 32.3 bits (72), Expect = 3.6
Identities = 30/113 (26%), Positives = 40/113 (35%)
Frame = +3
Query: 120 GPKGDIGLKGPKADIDLKGPKLDADFDVDGKKKKHGIDLGINLPSFGGKVKKPKGEIDLD 299
GP G+ G +GP+ + GPK G G D LP G+ +GE
Sbjct: 911 GPPGERGPQGPQGPVGFPGPK--------GPPGPAGKD---GLPGHPGQ----RGETGFQ 955
Query: 300 LNAGADANLDIKKPHVDIDLKGPIGDNGFNSKNADIDLKGPKGDIGLKGPKAD 458
G + P GPIG+ G +G G G +G K D
Sbjct: 956 GKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGD 1008
Score = 32.0 bits (71), Expect = 4.7
Identities = 40/148 (27%), Positives = 53/148 (35%), Gaps = 2/148 (1%)
Frame = +3
Query: 63 AGADANLDIKKPHVDIDLKGPKGDIGLKGPKADIDLKGPKLDADFDVDGKKKKHGIDLGI 242
+G D I+ + L G +G GLKG + +GP G++ G I
Sbjct: 1015 SGKDGPAGIRGFPGERGLPGAQGAPGLKGGEGPQGPQGP-----VGSPGERGSAGAAGPI 1069
Query: 243 NLPSFGGKVKKP--KGEIDLDLNAGADANLDIKKPHVDIDLKGPIGDNGFNSKNADIDLK 416
LP G P GE G + L GP G G ++ D K
Sbjct: 1070 GLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGD---K 1126
Query: 417 GPKGDIGLKGPKADIDLKGPKLDVDLKG 500
G G+ G KG K D GP L+G
Sbjct: 1127 GEIGEPGQKGSKGDKGENGPPGPPGLQG 1154
>sp|Q28083|COBA1_BOVIN Collagen alpha 1(XI) chain precursor Length = 911 Score = 45.4 bits (106), Expect = 4e-04 Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 3/124 (2%) Frame = +3 Query: 117 KGPKGDIGLKGPKADIDLKG-PKLDADFDVDGKKKKHGIDLGINLPSFGGKV--KKPKGE 287 +GP G G KGP+ L G P D GK+ + G + P G + P+G Sbjct: 472 QGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGSLGPPGPQGPIGYPGPRGV 531 Query: 288 IDLDLNAGADANLDIKKPHVDIDLKGPIGDNGFNSKNADIDLKGPKGDIGLKGPKADIDL 467 GAD +K KG G++GF D+ LKG +G++G GP+ + Sbjct: 532 ------KGADGVRGLKGS------KGEKGEDGFPGFKGDMGLKGDRGEVGQVGPRGEDGP 579 Query: 468 KGPK 479 +GPK Sbjct: 580 EGPK 583
Score = 44.7 bits (104), Expect = 7e-04
Identities = 39/147 (26%), Positives = 59/147 (40%), Gaps = 22/147 (14%)
Frame = +3
Query: 105 DIDLKGPKGDIGLKGPKADIDLKGPKLDADFDVD-------GKKKKHGIDLGINLPSFGG 263
D+ LKG +G++G GP+ + +GPK A D G+K K G+ LP + G
Sbjct: 558 DMGLKGDRGEVGQVGPRGEDGPEGPKGRAGPTGDPGPPGQAGEKGKLGVP---GLPGYPG 614
Query: 264 KVKKPKGEIDLDLNAGADANLDIKK---------------PHVDIDLKGPIGDNGFNSKN 398
+ + PKG GA+ + P +GP G G +
Sbjct: 615 R-QGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTS 673
Query: 399 ADIDLKGPKGDIGLKGPKADIDLKGPK 479
GP G+ G +GP+ + GPK
Sbjct: 674 GGDGPPGPPGERGPQGPQGPVGFPGPK 700
Score = 41.2 bits (95), Expect = 0.008
Identities = 44/156 (28%), Positives = 62/156 (39%), Gaps = 5/156 (3%)
Frame = +3
Query: 27 KKPKGEIDLDLNAGADANLDIKKPHVDIDLKGPKGDIGLKGPKADIDLKGPKLD-ADFDV 203
K KGE D G ++ +K ++ GP+G+ G +GPK GP D
Sbjct: 541 KGSKGEKGEDGFPGFKGDMGLKGDRGEVGQVGPRGEDGPEGPKG---RAGPTGDPGPPGQ 597
Query: 204 DGKKKKHGIDLGINLPSFGGKVKKPKGEIDLDLNAGADANLDIK----KPHVDIDLKGPI 371
G+K K G+ LP + G+ + PKG GA+ + KP +GP
Sbjct: 598 AGEKGKLGVP---GLPGYPGR-QGPKGSTGFPGFPGANGEKGARGVAGKPG-PRGQRGPT 652
Query: 372 GDNGFNSKNADIDLKGPKGDIGLKGPKADIDLKGPK 479
G G GPKG G GP +GP+
Sbjct: 653 GPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQ 688
Score = 39.7 bits (91), Expect = 0.022
Identities = 38/127 (29%), Positives = 49/127 (38%)
Frame = +3
Query: 120 GPKGDIGLKGPKADIDLKGPKLDADFDVDGKKKKHGIDLGINLPSFGGKVKKPKGEIDLD 299
GP G G GP+ L GP+ G+K G LP G P G +
Sbjct: 455 GPPGQQGNPGPQG---LPGPQ--GPIGPPGEKGPQGKPGLAGLPGADG----PPGHPGKE 505
Query: 300 LNAGADANLDIKKPHVDIDLKGPIGDNGFNSKNADIDLKGPKGDIGLKGPKADIDLKGPK 479
+G +L P I GP G G + KG KG+ G G K D+ LKG +
Sbjct: 506 GQSGEKGSLGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDR 565
Query: 480 LDVDLKG 500
+V G
Sbjct: 566 GEVGQVG 572
Score = 37.0 bits (84), Expect = 0.14
Identities = 33/120 (27%), Positives = 52/120 (43%)
Frame = +3
Query: 120 GPKGDIGLKGPKADIDLKGPKLDADFDVDGKKKKHGIDLGINLPSFGGKVKKPKGEIDLD 299
G KG++G GP+ ++GP GK+ + G D G +P G KG+ D
Sbjct: 317 GAKGEMGDPGPQGPRGVQGPP--GPTGKPGKRGRPGADGGRGMPGEPGA----KGDRGFD 370
Query: 300 LNAGADANLDIKKPHVDIDLKGPIGDNGFNSKNADIDLKGPKGDIGLKGPKADIDLKGPK 479
G + + GP G++G ++ +I GP+G G GP+ L GP+
Sbjct: 371 GLPGLPGDKGHRGERGPQGPPGPPGEDGIRGEDGEI---GPRGLPGEAGPRG---LLGPR 424
>sp|P12107|CA1B_HUMAN Collagen alpha 1(XI) chain precursor Length = 1806 Score = 45.1 bits (105), Expect = 5e-04 Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 3/124 (2%) Frame = +3 Query: 117 KGPKGDIGLKGPKADIDLKG-PKLDADFDVDGKKKKHGIDLGINLPSFGGKV--KKPKGE 287 +GP G G KGP+ L G P D GK+ + G + P G + P+G Sbjct: 705 QGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGV 764 Query: 288 IDLDLNAGADANLDIKKPHVDIDLKGPIGDNGFNSKNADIDLKGPKGDIGLKGPKADIDL 467 GAD +K KG G++GF D+ LKG +G++G GP+ + Sbjct: 765 ------KGADGVRGLKGS------KGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGP 812 Query: 468 KGPK 479 +GPK Sbjct: 813 EGPK 816
Score = 44.3 bits (103), Expect = 0.001
Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 11/136 (8%)
Frame = +3
Query: 105 DIDLKGPKGDIGLKGPKADIDLKGPKLDADFDVD-------GKKKKHGIDLGINLPSFGG 263
D+ LKG +G++G GP+ + +GPK A D G+K K G+ LP + G
Sbjct: 791 DMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVP---GLPGYPG 847
Query: 264 KVKKPKGEIDLDLNAGADANLDIK----KPHVDIDLKGPIGDNGFNSKNADIDLKGPKGD 431
+ + PKG GA+ + KP +GP G G GPKG
Sbjct: 848 R-QGPKGSTGFPGFPGANGEKGARGVAGKPG-PRGQRGPTGPRGSRGARGPTGKPGPKGT 905
Query: 432 IGLKGPKADIDLKGPK 479
G GP +GP+
Sbjct: 906 SGGDGPPGPPGERGPQ 921
Score = 40.8 bits (94), Expect = 0.010
Identities = 35/132 (26%), Positives = 50/132 (37%), Gaps = 5/132 (3%)
Frame = +3
Query: 120 GPKGDIGLKGPKADIDLKGPKLDADFDVDGKKKKHGIDLGINLPSFGGKVKKP-----KG 284
GP+G G G K KGP+ G + G+ + LP G P KG
Sbjct: 1078 GPQGPPGPAGEKGAPGEKGPQ--------GPAGRDGVQGPVGLPGPAGPAGSPGEDGDKG 1129
Query: 285 EIDLDLNAGADANLDIKKPHVDIDLKGPIGDNGFNSKNADIDLKGPKGDIGLKGPKADID 464
EI G+ P L+GP+G G + + +G +G G KG +
Sbjct: 1130 EIGEPGQKGSKGGKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARG 1189
Query: 465 LKGPKLDVDLKG 500
GP + L+G
Sbjct: 1190 FPGPPGPIGLQG 1201
Score = 38.1 bits (87), Expect = 0.065
Identities = 37/123 (30%), Positives = 47/123 (38%)
Frame = +3
Query: 120 GPKGDIGLKGPKADIDLKGPKLDADFDVDGKKKKHGIDLGINLPSFGGKVKKPKGEIDLD 299
GP G G GP+ L GP+ G+K G LP G P G +
Sbjct: 688 GPPGQQGNPGPQG---LPGPQ--GPIGPPGEKGPQGKPGLAGLPGADG----PPGHPGKE 738
Query: 300 LNAGADANLDIKKPHVDIDLKGPIGDNGFNSKNADIDLKGPKGDIGLKGPKADIDLKGPK 479
+G L P I GP G G + KG KG+ G G K D+ LKG +
Sbjct: 739 GQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDR 798
Query: 480 LDV 488
+V
Sbjct: 799 GEV 801
Score = 37.7 bits (86), Expect = 0.085
Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 2/122 (1%)
Frame = +3
Query: 120 GPKGDIGLKGPKADIDLKGPKLDADFDVDGKKKKHGIDLGINLPSFGGKVKKP--KGEID 293
G KG+IG G K KG +G G+ + P G +P +G+
Sbjct: 1126 GDKGEIGEPGQKGSKGGKGE--------NGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQG 1177
Query: 294 LDLNAGADANLDIKKPHVDIDLKGPIGDNGFNSKNADIDLKGPKGDIGLKGPKADIDLKG 473
+ G + P I L+G G G +N D+ GP G G +GP+ G
Sbjct: 1178 MFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADG 1237
Query: 474 PK 479
P+
Sbjct: 1238 PQ 1239
Score = 37.4 bits (85), Expect = 0.11
Identities = 34/120 (28%), Positives = 51/120 (42%)
Frame = +3
Query: 120 GPKGDIGLKGPKADIDLKGPKLDADFDVDGKKKKHGIDLGINLPSFGGKVKKPKGEIDLD 299
G KG+ G GP+ ++GP GK+ + G D G +P G KG+ D
Sbjct: 550 GAKGESGDPGPQGPRGVQGPP--GPTGKPGKRGRPGADGGRGMPGEPGA----KGDRGFD 603
Query: 300 LNAGADANLDIKKPHVDIDLKGPIGDNGFNSKNADIDLKGPKGDIGLKGPKADIDLKGPK 479
G + + GP GD+G ++ +I GP+G G GP+ L GP+
Sbjct: 604 GLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEI---GPRGLPGEAGPRG---LLGPR 657
Score = 32.3 bits (72), Expect = 3.6
Identities = 36/124 (29%), Positives = 44/124 (35%), Gaps = 3/124 (2%)
Frame = +3
Query: 117 KGPKGDIGLKGPKADIDLKGPKLDADFDVDGKKKKHGIDLGINLPSFGGKVKKPKGEIDL 296
KG KG+ G +GP GP+ A GK G+ + P GE L
Sbjct: 1377 KGAKGEAGAEGPPGKTGPVGPQGPA-----GKPGPEGLR----------GIPGPVGEQGL 1421
Query: 297 DLNAGADANLDIKKPHVDIDLKGPIGDNGFNSKNADIDLKGPKGD---IGLKGPKADIDL 467
AG D GP+G G D KG KG IGL GP +
Sbjct: 1422 PGAAGQDGP------------PGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGE 1469
Query: 468 KGPK 479
KG +
Sbjct: 1470 KGDR 1473
>sp|Q07563|COHA1_MOUSE Collagen alpha 1(XVII) chain (Bullous pemphigoid antigen 2) (180 kDa bullous pemphigoid antigen 2) Length = 1470 Score = 44.7 bits (104), Expect = 7e-04 Identities = 39/136 (28%), Positives = 54/136 (39%), Gaps = 9/136 (6%) Frame = +3 Query: 120 GPKGDIGLKGPKADIDLKG-PKLDADFDVDGKKKKHGIDLGINLPSFGGKVKK------- 275 GPKGD+G +GPK D L G P + G + G I P G + + Sbjct: 577 GPKGDMGSQGPKGDRGLPGTPGIPGPLGHPGPEGPKGQKGSIGDPGMEGPIGQRGLAGPM 636 Query: 276 -PKGEIDLDLNAGADANLDIKKPHVDIDLKGPIGDNGFNSKNADIDLKGPKGDIGLKGPK 452 P+GE +G + I L G G G + +GP G +G +G + Sbjct: 637 GPRGEPG-PPGSGEKGDRGIAGEQGPQGLPGVPGPPGLRGHSGSPGPQGPPGAVGPQGLR 695 Query: 453 ADIDLKGPKLDVDLKG 500 D+ L G K D L G Sbjct: 696 GDVGLPGVKGDKGLMG 711
>sp|P20908|CA15_HUMAN Collagen alpha 1(V) chain precursor Length = 1838 Score = 44.3 bits (103), Expect = 0.001 Identities = 46/151 (30%), Positives = 62/151 (41%), Gaps = 1/151 (0%) Frame = +3 Query: 27 KKPKGEIDLDLNAGADANLDIKKPHVDIDLKGPKGDIGLKGPKADIDLKGPKLD-ADFDV 203 K KGE D G ++ IK +I GP+G+ G +GPK GP D Sbjct: 804 KGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKG---RGGPNGDPGPLGP 860 Query: 204 DGKKKKHGIDLGINLPSFGGKVKKPKGEIDLDLNAGADANLDIKKPHVDIDLKGPIGDNG 383 G+K K G+ LP + G+ + PKG I GA+ K GP G G Sbjct: 861 PGEKGKLGVP---GLPGYPGR-QGPKGSIGFPGFPGANGE---KGGRGTPGKPGPRGQRG 913 Query: 384 FNSKNADIDLKGPKGDIGLKGPKADIDLKGP 476 + +GP+G G GPK + GP Sbjct: 914 PTGPRGE---RGPRGITGKPGPKGNSGGDGP 941
Score = 43.9 bits (102), Expect = 0.001
Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 6/128 (4%)
Frame = +3
Query: 114 LKGPKGDIGLKGPKADIDLKG----PKLDADFDVDGKKKKHGIDLGINLPSFGGKV--KK 275
L GP+G IG G K + G P D GK+ G G P G +
Sbjct: 731 LPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPG 790
Query: 276 PKGEIDLDLNAGADANLDIKKPHVDIDLKGPIGDNGFNSKNADIDLKGPKGDIGLKGPKA 455
P+G GAD +K KG G++GF D+ +KG +G+IG GP+
Sbjct: 791 PRGV------KGADGIRGLK------GTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRG 838
Query: 456 DIDLKGPK 479
+ +GPK
Sbjct: 839 EDGPEGPK 846
Score = 43.1 bits (100), Expect = 0.002
Identities = 38/121 (31%), Positives = 53/121 (43%)
Frame = +3
Query: 114 LKGPKGDIGLKGPKADIDLKGPKLDADFDVDGKKKKHGIDLGINLPSFGGKVKKPKGEID 293
LKG GD+G +GP+ ++GP A G++ + G D +P G PKG+
Sbjct: 581 LKGEPGDVGPQGPRG---VQGPPGPAG--KPGRRGRAGSDGARGMPGQTG----PKGDRG 631
Query: 294 LDLNAGADANLDIKKPHVDIDLKGPIGDNGFNSKNADIDLKGPKGDIGLKGPKADIDLKG 473
D AG K D GP G G + + D GP+G G GP+ + KG
Sbjct: 632 FDGLAGLPGE---KGHRGDPGPSGPPGPPGDDGERGDDGEVGPRGLPGKPGPRGLLGPKG 688
Query: 474 P 476
P
Sbjct: 689 P 689
Score = 42.0 bits (97), Expect = 0.005
Identities = 37/132 (28%), Positives = 53/132 (40%), Gaps = 5/132 (3%)
Frame = +3
Query: 120 GPKGDIGLKGPKADIDLKGPKLDADFDVDGKKKKHGIDLGINLPSFGGKVKKP-----KG 284
GP+G G G K KGP+ G + G+ + LP G V P KG
Sbjct: 1108 GPQGPPGPAGEKGAPGEKGPQ--------GPAGRDGLQGPVGLPGPAGPVGPPGEDGDKG 1159
Query: 285 EIDLDLNAGADANLDIKKPHVDIDLKGPIGDNGFNSKNADIDLKGPKGDIGLKGPKADID 464
EI G+ + + P +GPIG G + + + +G +G G KG +
Sbjct: 1160 EIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRG 1219
Query: 465 LKGPKLDVDLKG 500
GP V L+G
Sbjct: 1220 FPGPPGPVGLQG 1231
Score = 37.0 bits (84), Expect = 0.14
Identities = 36/129 (27%), Positives = 49/129 (37%), Gaps = 1/129 (0%)
Frame = +3
Query: 96 PHVDIDLKGPKGDIGLKGPKADIDLKGPKLDADFD-VDGKKKKHGIDLGINLPSFGGKVK 272
P L GP G +G G D +GP DG G L + GG
Sbjct: 473 PEGPAGLPGPPGTMGPTGQVGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDA 532
Query: 273 KPKGEIDLDLNAGADANLDIKKPHVDIDLKGPIGDNGFNSKNADIDLKGPKGDIGLKGPK 452
KG + + A A L + + L+GP G G + + GP G GLKG
Sbjct: 533 GSKGPMVSAQESQAQAILQQAR----LALRGPAGPMGLTGRPGPV---GPPGSGGLKGEP 585
Query: 453 ADIDLKGPK 479
D+ +GP+
Sbjct: 586 GDVGPQGPR 594
Score = 36.6 bits (83), Expect = 0.19
Identities = 31/121 (25%), Positives = 43/121 (35%)
Frame = +3
Query: 117 KGPKGDIGLKGPKADIDLKGPKLDADFDVDGKKKKHGIDLGINLPSFGGKVKKPKGEIDL 296
KG KGD G +GP +GP +G PS P+G+ L
Sbjct: 1167 KGSKGDKGEQGPPGPTGPQGP------------------IGQPGPSGADGEPGPRGQQGL 1208
Query: 297 DLNAGADANLDIKKPHVDIDLKGPIGDNGFNSKNADIDLKGPKGDIGLKGPKADIDLKGP 476
G + P + L+G G G + D+ GP G G +GP GP
Sbjct: 1209 FGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGP 1268
Query: 477 K 479
+
Sbjct: 1269 Q 1269
Score = 36.6 bits (83), Expect = 0.19
Identities = 41/128 (32%), Positives = 48/128 (37%), Gaps = 1/128 (0%)
Frame = +3
Query: 120 GPKGDIGLKGPKADIDLKGPK-LDADFDVDGKKKKHGIDLGINLPSFGGKVKKPKGEIDL 296
GP+G G KG K + L+GP G K G D +P P GE L
Sbjct: 1399 GPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPG-------PVGEQGL 1451
Query: 297 DLNAGADANLDIKKPHVDIDLKGPIGDNGFNSKNADIDLKGPKGDIGLKGPKADIDLKGP 476
+ G D P LKG G G I L GP G+ G KG D L GP
Sbjct: 1452 PGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKG---DRGLPGP 1508
Query: 477 KLDVDLKG 500
+ KG
Sbjct: 1509 QGSSGPKG 1516
Score = 36.2 bits (82), Expect = 0.25
Identities = 37/133 (27%), Positives = 49/133 (36%), Gaps = 6/133 (4%)
Frame = +3
Query: 120 GPKGDIGLKGPKADIDLKGPK----LDADFDVDGKKKKHGIDLGINLPSFGGK--VKKPK 281
G KG G GP+ I GP+ D + G K + G D P F G +K +
Sbjct: 772 GEKGGQGPPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGED---GFPGFKGDMGIKGDR 828
Query: 282 GEIDLDLNAGADANLDIKKPHVDIDLKGPIGDNGFNSKNADIDLKGPKGDIGLKGPKADI 461
GEI G D +GP G G N + G KG +G+ G
Sbjct: 829 GEIGPPGPRGEDGP------------EGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYP 876
Query: 462 DLKGPKLDVDLKG 500
+GPK + G
Sbjct: 877 GRQGPKGSIGFPG 889
Score = 34.7 bits (78), Expect = 0.72
Identities = 37/137 (27%), Positives = 52/137 (37%), Gaps = 16/137 (11%)
Frame = +3
Query: 114 LKGPKGDIGLKGPKADIDLKG----PKLDADFDVDGKKKKHGIDLGINLPSFGGKVKKPK 281
L+G GD GL GP + LKG P G++ G I +P G P+
Sbjct: 1055 LRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPG----PQ 1110
Query: 282 GEIDLDLNAGADANLDIKKPHVDIDLKGPI------------GDNGFNSKNADIDLKGPK 425
G GA + P L+GP+ G++G + + KG K
Sbjct: 1111 GPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSK 1170
Query: 426 GDIGLKGPKADIDLKGP 476
GD G +GP +GP
Sbjct: 1171 GDKGEQGPPGPTGPQGP 1187
Score = 33.1 bits (74), Expect = 2.1
Identities = 39/156 (25%), Positives = 54/156 (34%)
Frame = +3
Query: 33 PKGEIDLDLNAGADANLDIKKPHVDIDLKGPKGDIGLKGPKADIDLKGPKLDADFDVDGK 212
P G +D G N+ + +G G GL GP+ I G K G
Sbjct: 695 PPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEK--------GP 746
Query: 213 KKKHGIDLGINLPSFGGKVKKPKGEIDLDLNAGADANLDIKKPHVDIDLKGPIGDNGFNS 392
K G+ +P G P G + G P I GP G G +
Sbjct: 747 LGKPGLP---GMPGADG----PPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADG 799
Query: 393 KNADIDLKGPKGDIGLKGPKADIDLKGPKLDVDLKG 500
KG KG+ G G K D+ +KG + ++ G
Sbjct: 800 IRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPG 835
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,680,829
Number of Sequences: 369166
Number of extensions: 3393585
Number of successful extensions: 15879
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12556
length of database: 68,354,980
effective HSP length: 115
effective length of database: 47,110,455
effective search space used: 17477978805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
