Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_O23
(716 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P55985|TRUD_HELPY tRNA pseudouridine synthase D (tRNA-ur... 31 2.9
sp|Q75VB1|MATK_QUELY Maturase K (Intron maturase) 30 4.9
sp|Q75VB3|MATK_QUEGA Maturase K (Intron maturase) 30 4.9
sp|Q7YM14|MATK_QUERU Maturase K (Intron maturase) >gi|68052... 30 4.9
sp|Q75VA5|MATK_QUESU Maturase K (Intron maturase) 30 4.9
sp|Q75VA8|MATK_QUEPE Maturase K (Intron maturase) 30 4.9
sp|Q75VB2|MATK_QUEIL Maturase K (Intron maturase) >gi|68052... 30 4.9
sp|Q75VB5|MATK_QUECE Maturase K (Intron maturase) 30 4.9
sp|Q76DY9|MATK_CASCR Maturase K (Intron maturase) 30 4.9
sp|Q8M920|MATK_QUERO Maturase K (Intron maturase) 30 4.9
>sp|P55985|TRUD_HELPY tRNA pseudouridine synthase D (tRNA-uridine isomerase D) (tRNA
pseudouridylate synthase D)
Length = 381
Score = 31.2 bits (69), Expect = 2.9
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Frame = -3
Query: 363 LENQTKYLNQSLN*FLGYEF*NYQINQILYSKVFLS---NHYQLRNHLKHFR 217
L+NQTK+ +Q LN FL + +Y N +L ++ +S + + ++ +L+ F+
Sbjct: 184 LQNQTKFAHQKLNAFLISSYQSYLFNALLSKRLEISKIISAFSVKENLEFFK 235
>sp|Q75VB1|MATK_QUELY Maturase K (Intron maturase)
Length = 504
Score = 30.4 bits (67), Expect = 4.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 573 DFGHCNTQISRNSCSRITSNMSPRIFLFVYTCF 475
++ +CN+ I N I S +PR FLF+Y +
Sbjct: 182 EYSNCNSLIITNKSISIFSKSNPRFFLFLYNSY 214
>sp|Q75VB3|MATK_QUEGA Maturase K (Intron maturase)
Length = 504
Score = 30.4 bits (67), Expect = 4.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 573 DFGHCNTQISRNSCSRITSNMSPRIFLFVYTCF 475
++ +CN+ I N I S +PR FLF+Y +
Sbjct: 182 EYSNCNSLIITNKSISIFSKSNPRFFLFLYNSY 214
>sp|Q7YM14|MATK_QUERU Maturase K (Intron maturase)
sp|Q75VA9|MATK_QUEPA Maturase K (Intron maturase)
Length = 504
Score = 30.4 bits (67), Expect = 4.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 573 DFGHCNTQISRNSCSRITSNMSPRIFLFVYTCF 475
++ +CN+ I N I S +PR FLF+Y +
Sbjct: 182 EYSNCNSLIITNKSISIFSKSNPRFFLFLYNSY 214
>sp|Q75VA5|MATK_QUESU Maturase K (Intron maturase)
Length = 504
Score = 30.4 bits (67), Expect = 4.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 573 DFGHCNTQISRNSCSRITSNMSPRIFLFVYTCF 475
++ +CN+ I N I S +PR FLF+Y +
Sbjct: 182 EYSNCNSLIITNKSISIFSKSNPRFFLFLYNSY 214
>sp|Q75VA8|MATK_QUEPE Maturase K (Intron maturase)
Length = 504
Score = 30.4 bits (67), Expect = 4.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 573 DFGHCNTQISRNSCSRITSNMSPRIFLFVYTCF 475
++ +CN+ I N I S +PR FLF+Y +
Sbjct: 182 EYSNCNSLIITNKSISIFSKSNPRFFLFLYNSY 214
>sp|Q75VB2|MATK_QUEIL Maturase K (Intron maturase)
sp|Q75VB4|MATK_QUECO Maturase K (Intron maturase)
Length = 504
Score = 30.4 bits (67), Expect = 4.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 573 DFGHCNTQISRNSCSRITSNMSPRIFLFVYTCF 475
++ +CN+ I N I S +PR FLF+Y +
Sbjct: 182 EYSNCNSLIITNKSLSIFSKSNPRFFLFLYNSY 214
>sp|Q75VB5|MATK_QUECE Maturase K (Intron maturase)
Length = 504
Score = 30.4 bits (67), Expect = 4.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 573 DFGHCNTQISRNSCSRITSNMSPRIFLFVYTCF 475
++ +CN+ I N I S +PR FLF+Y +
Sbjct: 182 EYSNCNSLIITNKSISIFSKSNPRFFLFLYNSY 214
>sp|Q76DY9|MATK_CASCR Maturase K (Intron maturase)
Length = 464
Score = 30.4 bits (67), Expect = 4.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 573 DFGHCNTQISRNSCSRITSNMSPRIFLFVYTCF 475
++ +CN+ I N I S +PR FLF+Y +
Sbjct: 142 EYSNCNSLIITNKSISIFSKSNPRFFLFLYNSY 174
>sp|Q8M920|MATK_QUERO Maturase K (Intron maturase)
Length = 504
Score = 30.4 bits (67), Expect = 4.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 573 DFGHCNTQISRNSCSRITSNMSPRIFLFVYTCF 475
++ +CN+ I N I S +PR FLF+Y +
Sbjct: 182 EYSNCNSLIITNKSISIFSKSNPRFFLFLYNSY 214
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,235,036
Number of Sequences: 369166
Number of extensions: 1533391
Number of successful extensions: 4164
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4156
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6365071885
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)