Planarian EST Database

DrC_01099

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_01099 CAGTTTTATTTCTGTAATTTTGTATCAAATACAAGATATAGAAGCAGTTACACAAATGTC AGGGGGTCAATCTTCAGGTGGAAGACACAGACCACCAAGTGGAGGACAGAAACCACCAAG TGGAGGACAGAAACCACCAAGTGGAGGACAGAAACCACCAAGTGGAGGACAGAGACCTAA AAATTGAAAAAAATAGAAAAATACGTAATTTATCAGTTTTGTTCTGAAAAAATAACATTT ACTTCATT

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01099
         (248 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q91VJ5|PQBP1_MOUSE  Polyglutamine-binding protein 1 (Poly...    42   3e-04
sp|Q6PCT5|PQBP1_RAT  Polyglutamine-binding protein 1 (Polygl...    42   3e-04
sp|Q12114|CHS5_YEAST  Chitin biosynthesis protein CHS5 (Prot...    40   0.001
sp|O60828|PQBP1_HUMAN  Polyglutamine-binding protein 1 (Poly...    35   0.070
sp|Q9PW73|SOJO_XENLA  Cytoskeletal protein Sojo (p170)             32   0.59 
sp|Q8TI88|PSMR_METAC  Proteasome-activating nucleotidase (Pr...    30   1.3  
sp|Q8PY58|PSMR_METMA  Proteasome-activating nucleotidase (Pr...    30   1.3  
sp|P50469|M22_STRPY  M protein, serotype 2.2 precursor             29   2.9  
sp|P40767|YVCE_BACSU  Hypothetical protein yvcE (PSPA2)            29   2.9  
sp|Q12527|ATG11_YEAST  Autophagy-related protein 11 (Cytopla...    29   2.9

>sp|Q91VJ5|PQBP1_MOUSE Polyglutamine-binding protein 1 (Polyglutamine tract-binding
           protein 1) (PQBP-1) (38 kDa nuclear protein containing a
           WW domain) (Npw38)
          Length = 263

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 16/36 (44%), Positives = 25/36 (69%)
 Frame = +3

Query: 69  NLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVEDRD 176
           NL+  D +H+  DR+H+  DR+H+  DRNH+  DR+
Sbjct: 106 NLEKVDRNHEKSDRSHEKPDRSHEKADRNHEKNDRE 141


 Score = 38.5 bits (88), Expect = 0.005
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = +3

Query: 42  KQLHKCQGVNLQVED-TDHQVE--DRNHQVEDRNHQVEDRNHQVEDRDLKIEKNRKIRN 209
           K   K +  N   ED +D  +E  DRNH+  DR+H+  DR+H+  DR+ +     + RN
Sbjct: 87  KSAKKVRNNNADAEDKSDRNLEKVDRNHEKSDRSHEKPDRSHEKADRNHEKNDRERERN 145


 Score = 33.9 bits (76), Expect = 0.12
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +3

Query: 69  NLQVEDTDHQVEDRNHQVEDRNHQVED----RNHQVEDRDLKIEKNRK 200
           N +  D  H+  DR+H+  DRNH+  D    RN+   DR+   ++ R+
Sbjct: 113 NHEKSDRSHEKPDRSHEKADRNHEKNDRERERNYDKVDRERDRDRERE 160

>sp|Q6PCT5|PQBP1_RAT Polyglutamine-binding protein 1 (Polyglutamine tract-binding
           protein 1) (PQBP-1)
          Length = 263

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 16/36 (44%), Positives = 25/36 (69%)
 Frame = +3

Query: 69  NLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVEDRD 176
           NL+  D +H+  DR+H+  DR+H+  DRNH+  DR+
Sbjct: 106 NLEKVDRNHEKSDRSHEKPDRSHEKADRNHEKSDRE 141


 Score = 37.4 bits (85), Expect = 0.011
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = +3

Query: 42  KQLHKCQGVNLQVED-TDHQVE--DRNHQVEDRNHQVEDRNHQVEDRDLKIEKNRKIRN 209
           K   K +  N   ED ++  +E  DRNH+  DR+H+  DR+H+  DR+ +     + RN
Sbjct: 87  KSAKKLRNSNADAEDKSERNLEKVDRNHEKSDRSHEKPDRSHEKADRNHEKSDRERERN 145


 Score = 33.9 bits (76), Expect = 0.12
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +3

Query: 69  NLQVEDTDHQVEDRNHQVEDRNHQVED----RNHQVEDRDLKIEKNRK 200
           N +  D  H+  DR+H+  DRNH+  D    RN+   DR+   ++ R+
Sbjct: 113 NHEKSDRSHEKPDRSHEKADRNHEKSDRERERNYDKVDRERDRDRERE 160

>sp|Q12114|CHS5_YEAST Chitin biosynthesis protein CHS5 (Protein CAL3)
          Length = 671

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 19/45 (42%), Positives = 25/45 (55%)
 Frame = +3

Query: 66  VNLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVEDRDLKIEKNRK 200
           VN  +ED +   ED N  VED N  V+D N  VED +  +E + K
Sbjct: 467 VNESIEDANEPAEDSNEPVEDSNKPVKDSNKPVEDSNKPVEDSNK 511


 Score = 39.7 bits (91), Expect = 0.002
 Identities = 20/40 (50%), Positives = 23/40 (57%)
 Frame = +3

Query: 69  NLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVEDRDLKIE 188
           N  VED++  VED N  VED N  VED N  VED    +E
Sbjct: 496 NKPVEDSNKPVEDSNKPVEDSNKPVEDANEPVEDTSEPVE 535


 Score = 39.3 bits (90), Expect = 0.003
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +3

Query: 60  QGVNLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVEDRDLKIEKNRK 200
           +  N   ED++  VED N  V+D N  VED N  VED +  +E + K
Sbjct: 472 EDANEPAEDSNEPVEDSNKPVKDSNKPVEDSNKPVEDSNKPVEDSNK 518


 Score = 38.1 bits (87), Expect = 0.006
 Identities = 19/40 (47%), Positives = 24/40 (60%)
 Frame = +3

Query: 69  NLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVEDRDLKIE 188
           N  VED++  V+D N  VED N  VED N  VED +  +E
Sbjct: 482 NEPVEDSNKPVKDSNKPVEDSNKPVEDSNKPVEDSNKPVE 521


 Score = 38.1 bits (87), Expect = 0.006
 Identities = 19/40 (47%), Positives = 24/40 (60%)
 Frame = +3

Query: 69  NLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVEDRDLKIE 188
           N  V+D++  VED N  VED N  VED N  VED +  +E
Sbjct: 489 NKPVKDSNKPVEDSNKPVEDSNKPVEDSNKPVEDANEPVE 528


 Score = 37.4 bits (85), Expect = 0.011
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +3

Query: 69  NLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVEDRDLKIEKNRK 200
           N  VED++  VED N  VED N  VED +  VED    +++  +
Sbjct: 503 NKPVEDSNKPVEDSNKPVEDANEPVEDTSEPVEDAGEPVQETNE 546


 Score = 34.7 bits (78), Expect = 0.070
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 72  LQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVEDRDLKIEKNRK 200
           ++  + +  +ED N   ED N  VED N  V+D +  +E + K
Sbjct: 462 IETPEVNESIEDANEPAEDSNEPVEDSNKPVKDSNKPVEDSNK 504


 Score = 31.2 bits (69), Expect = 0.77
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 10/60 (16%)
 Frame = +3

Query: 69  NLQVEDTDHQVEDRNHQVEDRNHQVEDRN----------HQVEDRDLKIEKNRKIRNLSV 218
           N  VED +  VED +  VED    V++ N          HQ ED +L+ E      +++V
Sbjct: 517 NKPVEDANEPVEDTSEPVEDAGEPVQETNEFTTDIASPRHQEEDIELEAEPKDATESVAV 576


 Score = 28.1 bits (61), Expect = 6.5
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 84  DTDHQVEDRNHQVEDRNHQVEDRNHQVEDRDLKIEKNRK 200
           + + +  + N  +ED N   ED N  VED +  ++ + K
Sbjct: 459 EAEIETPEVNESIEDANEPAEDSNEPVEDSNKPVKDSNK 497

>sp|O60828|PQBP1_HUMAN Polyglutamine-binding protein 1 (Polyglutamine tract-binding
           protein 1) (PQBP-1) (38 kDa nuclear protein containing a
           WW domain) (Npw38) (Protein JM26)
          Length = 265

 Score = 34.7 bits (78), Expect = 0.070
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 84  DTDHQVEDRNHQVEDRNHQVEDRNHQVEDRD 176
           D  H   DR+H+  DR H   DR H   DRD
Sbjct: 111 DRGHDKSDRSHEKLDRGHDKSDRGHDKSDRD 141


 Score = 33.5 bits (75), Expect = 0.16
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
 Frame = +3

Query: 42  KQLHKCQGVNLQVE---DTDHQVEDRNHQVEDRNHQVEDRNHQVEDR 173
           K   K +  N   E   D  H   DR H   DR+H+  DR H   DR
Sbjct: 87  KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDR 133

>sp|Q9PW73|SOJO_XENLA Cytoskeletal protein Sojo (p170)
          Length = 1335

 Score = 31.6 bits (70), Expect = 0.59
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = +3

Query: 54   KCQGVNLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVEDRDLKIEKNR 197
            K +    ++E+ DH+V D +  ++DRN +++ R  Q+   D+ I  ++
Sbjct: 936  KLRSYKQELEERDHEVLDMDQLLKDRNWELKQRAAQLTQLDMSIRGHK 983


 Score = 29.6 bits (65), Expect = 2.2
 Identities = 11/38 (28%), Positives = 25/38 (65%)
 Frame = +3

Query: 60   QGVNLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVEDR 173
            QG+  ++     ++E+R+H+V D +  ++DRN +++ R
Sbjct: 931  QGLTEKLRSYKQELEERDHEVLDMDQLLKDRNWELKQR 968

>sp|Q8TI88|PSMR_METAC Proteasome-activating nucleotidase (Proteasome regulatory subunit)
          Length = 421

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +3

Query: 78  VEDTDHQVEDRNHQVEDRNHQVEDRNHQVEDRDLKIEKNRKIRNL 212
           V+D   Q+E RN  +E++  Q+E     +E++ +K E  R+IR L
Sbjct: 27  VQDRVRQLESRNSFLEEQCSQIESEKRYLENQKIKYE--REIRKL 69

>sp|Q8PY58|PSMR_METMA Proteasome-activating nucleotidase (Proteasome regulatory subunit)
          Length = 420

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
 Frame = +3

Query: 75  QVEDTDHQVEDRNHQVEDRNHQVEDRNHQVED-----RDLKIEKNRKIRNL 212
           ++ +T   V+DR  Q+E RN  +E++  Q+E       + KI+  R+IR L
Sbjct: 19  ELGETTESVQDRVRQLESRNSFLEEQCSQIESEKRYLENQKIKYEREIRKL 69

>sp|P50469|M22_STRPY M protein, serotype 2.2 precursor
          Length = 372

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +3

Query: 84  DTDHQVEDRNHQVEDRNHQVEDRNHQVEDRDLKI--EKNRKI 203
           +TDHQ  +  HQ  + ++QV + + +   RDL+   E N+K+
Sbjct: 204 ETDHQALEAKHQKLEADYQVSETSRKGLSRDLEASREANKKV 245

>sp|P40767|YVCE_BACSU Hypothetical protein yvcE (PSPA2)
          Length = 473

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 13/57 (22%), Positives = 33/57 (57%)
 Frame = +3

Query: 33  KI*KQLHKCQGVNLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVEDRDLKIEKNRKI 203
           KI K+L   + +N +  DT +++ED+  + +    +++    ++++ + +IEK  +I
Sbjct: 67  KIEKEL---KDINDKALDTSNKIEDKKEENDKTKEEIKKLKKEIKETEARIEKRNEI 120

>sp|Q12527|ATG11_YEAST Autophagy-related protein 11 (Cytoplasm to vacuole targeting
           protein 9)
          Length = 1178

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 69  NLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVEDRDLKIEKNRKIRNLS 215
           N+   + D   +  NHQ+++    V+D  HQ++   LK E NRK   +S
Sbjct: 686 NISEVNIDSVSQANNHQIQELESNVDDLLHQLQ--LLKEENNRKSMQIS 732

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,023,457
Number of Sequences: 369166
Number of extensions: 159151
Number of successful extensions: 1088
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 68,354,980
effective HSP length: 53
effective length of database: 58,564,025
effective search space used: 1698356725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01099

Planaria EST Database

DrC_01099

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail