Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_F11
(243 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q91VJ5|PQBP1_MOUSE Polyglutamine-binding protein 1 (Poly... 42 3e-04
sp|Q6PCT5|PQBP1_RAT Polyglutamine-binding protein 1 (Polygl... 42 3e-04
sp|Q12114|CHS5_YEAST Chitin biosynthesis protein CHS5 (Prot... 40 0.001
sp|O60828|PQBP1_HUMAN Polyglutamine-binding protein 1 (Poly... 35 0.070
sp|Q9PW73|SOJO_XENLA Cytoskeletal protein Sojo (p170) 32 0.59
sp|Q8TI88|PSMR_METAC Proteasome-activating nucleotidase (Pr... 30 1.3
sp|Q8PY58|PSMR_METMA Proteasome-activating nucleotidase (Pr... 30 1.3
sp|P50469|M22_STRPY M protein, serotype 2.2 precursor 29 3.0
sp|P40767|YVCE_BACSU Hypothetical protein yvcE (PSPA2) 29 3.0
sp|Q12527|ATG11_YEAST Autophagy-related protein 11 (Cytopla... 29 3.0
>sp|Q91VJ5|PQBP1_MOUSE Polyglutamine-binding protein 1 (Polyglutamine tract-binding
protein 1) (PQBP-1) (38 kDa nuclear protein containing a
WW domain) (Npw38)
Length = 263
Score = 42.4 bits (98), Expect = 3e-04
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +1
Query: 64 NLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVEDRD 171
NL+ D +H+ DR+H+ DR+H+ DRNH+ DR+
Sbjct: 106 NLEKVDRNHEKSDRSHEKPDRSHEKADRNHEKNDRE 141
Score = 38.5 bits (88), Expect = 0.005
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = +1
Query: 37 KQLHKCQGVNLQVED-TDHQVE--DRNHQVEDRNHQVEDRNHQVEDRDLKIEKNRKIRN 204
K K + N ED +D +E DRNH+ DR+H+ DR+H+ DR+ + + RN
Sbjct: 87 KSAKKVRNNNADAEDKSDRNLEKVDRNHEKSDRSHEKPDRSHEKADRNHEKNDRERERN 145
Score = 33.9 bits (76), Expect = 0.12
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +1
Query: 64 NLQVEDTDHQVEDRNHQVEDRNHQVED----RNHQVEDRDLKIEKNRK 195
N + D H+ DR+H+ DRNH+ D RN+ DR+ ++ R+
Sbjct: 113 NHEKSDRSHEKPDRSHEKADRNHEKNDRERERNYDKVDRERDRDRERE 160
>sp|Q6PCT5|PQBP1_RAT Polyglutamine-binding protein 1 (Polyglutamine tract-binding
protein 1) (PQBP-1)
Length = 263
Score = 42.4 bits (98), Expect = 3e-04
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +1
Query: 64 NLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVEDRD 171
NL+ D +H+ DR+H+ DR+H+ DRNH+ DR+
Sbjct: 106 NLEKVDRNHEKSDRSHEKPDRSHEKADRNHEKSDRE 141
Score = 37.4 bits (85), Expect = 0.011
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = +1
Query: 37 KQLHKCQGVNLQVED-TDHQVE--DRNHQVEDRNHQVEDRNHQVEDRDLKIEKNRKIRN 204
K K + N ED ++ +E DRNH+ DR+H+ DR+H+ DR+ + + RN
Sbjct: 87 KSAKKLRNSNADAEDKSERNLEKVDRNHEKSDRSHEKPDRSHEKADRNHEKSDRERERN 145
Score = 33.9 bits (76), Expect = 0.12
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +1
Query: 64 NLQVEDTDHQVEDRNHQVEDRNHQVED----RNHQVEDRDLKIEKNRK 195
N + D H+ DR+H+ DRNH+ D RN+ DR+ ++ R+
Sbjct: 113 NHEKSDRSHEKPDRSHEKADRNHEKSDRERERNYDKVDRERDRDRERE 160
>sp|Q12114|CHS5_YEAST Chitin biosynthesis protein CHS5 (Protein CAL3)
Length = 671
Score = 40.4 bits (93), Expect = 0.001
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = +1
Query: 61 VNLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVEDRDLKIEKNRK 195
VN +ED + ED N VED N V+D N VED + +E + K
Sbjct: 467 VNESIEDANEPAEDSNEPVEDSNKPVKDSNKPVEDSNKPVEDSNK 511
Score = 39.7 bits (91), Expect = 0.002
Identities = 20/40 (50%), Positives = 23/40 (57%)
Frame = +1
Query: 64 NLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVEDRDLKIE 183
N VED++ VED N VED N VED N VED +E
Sbjct: 496 NKPVEDSNKPVEDSNKPVEDSNKPVEDANEPVEDTSEPVE 535
Score = 39.3 bits (90), Expect = 0.003
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +1
Query: 55 QGVNLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVEDRDLKIEKNRK 195
+ N ED++ VED N V+D N VED N VED + +E + K
Sbjct: 472 EDANEPAEDSNEPVEDSNKPVKDSNKPVEDSNKPVEDSNKPVEDSNK 518
Score = 38.1 bits (87), Expect = 0.006
Identities = 19/40 (47%), Positives = 24/40 (60%)
Frame = +1
Query: 64 NLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVEDRDLKIE 183
N VED++ V+D N VED N VED N VED + +E
Sbjct: 482 NEPVEDSNKPVKDSNKPVEDSNKPVEDSNKPVEDSNKPVE 521
Score = 38.1 bits (87), Expect = 0.006
Identities = 19/40 (47%), Positives = 24/40 (60%)
Frame = +1
Query: 64 NLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVEDRDLKIE 183
N V+D++ VED N VED N VED N VED + +E
Sbjct: 489 NKPVKDSNKPVEDSNKPVEDSNKPVEDSNKPVEDANEPVE 528
Score = 37.4 bits (85), Expect = 0.011
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +1
Query: 64 NLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVEDRDLKIEKNRK 195
N VED++ VED N VED N VED + VED +++ +
Sbjct: 503 NKPVEDSNKPVEDSNKPVEDANEPVEDTSEPVEDAGEPVQETNE 546
Score = 34.7 bits (78), Expect = 0.070
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 67 LQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVEDRDLKIEKNRK 195
++ + + +ED N ED N VED N V+D + +E + K
Sbjct: 462 IETPEVNESIEDANEPAEDSNEPVEDSNKPVKDSNKPVEDSNK 504
Score = 31.2 bits (69), Expect = 0.78
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 10/60 (16%)
Frame = +1
Query: 64 NLQVEDTDHQVEDRNHQVEDRNHQVEDRN----------HQVEDRDLKIEKNRKIRNLSV 213
N VED + VED + VED V++ N HQ ED +L+ E +++V
Sbjct: 517 NKPVEDANEPVEDTSEPVEDAGEPVQETNEFTTDIASPRHQEEDIELEAEPKDATESVAV 576
Score = 28.1 bits (61), Expect = 6.6
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 79 DTDHQVEDRNHQVEDRNHQVEDRNHQVEDRDLKIEKNRK 195
+ + + + N +ED N ED N VED + ++ + K
Sbjct: 459 EAEIETPEVNESIEDANEPAEDSNEPVEDSNKPVKDSNK 497
>sp|O60828|PQBP1_HUMAN Polyglutamine-binding protein 1 (Polyglutamine tract-binding
protein 1) (PQBP-1) (38 kDa nuclear protein containing a
WW domain) (Npw38) (Protein JM26)
Length = 265
Score = 34.7 bits (78), Expect = 0.070
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 79 DTDHQVEDRNHQVEDRNHQVEDRNHQVEDRD 171
D H DR+H+ DR H DR H DRD
Sbjct: 111 DRGHDKSDRSHEKLDRGHDKSDRGHDKSDRD 141
Score = 33.5 bits (75), Expect = 0.16
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Frame = +1
Query: 37 KQLHKCQGVNLQVE---DTDHQVEDRNHQVEDRNHQVEDRNHQVEDR 168
K K + N E D H DR H DR+H+ DR H DR
Sbjct: 87 KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDR 133
>sp|Q9PW73|SOJO_XENLA Cytoskeletal protein Sojo (p170)
Length = 1335
Score = 31.6 bits (70), Expect = 0.59
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +1
Query: 49 KCQGVNLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVEDRDLKIEKNR 192
K + ++E+ DH+V D + ++DRN +++ R Q+ D+ I ++
Sbjct: 936 KLRSYKQELEERDHEVLDMDQLLKDRNWELKQRAAQLTQLDMSIRGHK 983
Score = 29.6 bits (65), Expect = 2.3
Identities = 11/38 (28%), Positives = 25/38 (65%)
Frame = +1
Query: 55 QGVNLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVEDR 168
QG+ ++ ++E+R+H+V D + ++DRN +++ R
Sbjct: 931 QGLTEKLRSYKQELEERDHEVLDMDQLLKDRNWELKQR 968
>sp|Q8TI88|PSMR_METAC Proteasome-activating nucleotidase (Proteasome regulatory subunit)
Length = 421
Score = 30.4 bits (67), Expect = 1.3
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +1
Query: 73 VEDTDHQVEDRNHQVEDRNHQVEDRNHQVEDRDLKIEKNRKIRNL 207
V+D Q+E RN +E++ Q+E +E++ +K E R+IR L
Sbjct: 27 VQDRVRQLESRNSFLEEQCSQIESEKRYLENQKIKYE--REIRKL 69
>sp|Q8PY58|PSMR_METMA Proteasome-activating nucleotidase (Proteasome regulatory subunit)
Length = 420
Score = 30.4 bits (67), Expect = 1.3
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Frame = +1
Query: 70 QVEDTDHQVEDRNHQVEDRNHQVEDRNHQVED-----RDLKIEKNRKIRNL 207
++ +T V+DR Q+E RN +E++ Q+E + KI+ R+IR L
Sbjct: 19 ELGETTESVQDRVRQLESRNSFLEEQCSQIESEKRYLENQKIKYEREIRKL 69
>sp|P50469|M22_STRPY M protein, serotype 2.2 precursor
Length = 372
Score = 29.3 bits (64), Expect = 3.0
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +1
Query: 79 DTDHQVEDRNHQVEDRNHQVEDRNHQVEDRDLKI--EKNRKI 198
+TDHQ + HQ + ++QV + + + RDL+ E N+K+
Sbjct: 204 ETDHQALEAKHQKLEADYQVSETSRKGLSRDLEASREANKKV 245
>sp|P40767|YVCE_BACSU Hypothetical protein yvcE (PSPA2)
Length = 473
Score = 29.3 bits (64), Expect = 3.0
Identities = 13/57 (22%), Positives = 33/57 (57%)
Frame = +1
Query: 28 KI*KQLHKCQGVNLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVEDRDLKIEKNRKI 198
KI K+L + +N + DT +++ED+ + + +++ ++++ + +IEK +I
Sbjct: 67 KIEKEL---KDINDKALDTSNKIEDKKEENDKTKEEIKKLKKEIKETEARIEKRNEI 120
>sp|Q12527|ATG11_YEAST Autophagy-related protein 11 (Cytoplasm to vacuole targeting
protein 9)
Length = 1178
Score = 29.3 bits (64), Expect = 3.0
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 64 NLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVEDRDLKIEKNRKIRNLS 210
N+ + D + NHQ+++ V+D HQ++ LK E NRK +S
Sbjct: 686 NISEVNIDSVSQANNHQIQELESNVDDLLHQLQ--LLKEENNRKSMQIS 732
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,695,739
Number of Sequences: 369166
Number of extensions: 153998
Number of successful extensions: 1060
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 68,354,980
effective HSP length: 51
effective length of database: 58,933,495
effective search space used: 1709071355
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)