Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_L13
(186 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q91VJ5|PQBP1_MOUSE Polyglutamine-binding protein 1 (Poly... 42 3e-04
sp|Q6PCT5|PQBP1_RAT Polyglutamine-binding protein 1 (Polygl... 42 3e-04
sp|Q12114|CHS5_YEAST Chitin biosynthesis protein CHS5 (Prot... 39 0.005
sp|O60828|PQBP1_HUMAN Polyglutamine-binding protein 1 (Poly... 35 0.069
sp|Q9PW73|SOJO_XENLA Cytoskeletal protein Sojo (p170) 31 0.76
sp|O35889|AFAD_RAT Afadin (Af-6 protein) 28 6.4
sp|O95613|PCNT_HUMAN Pericentrin (Pericentrin B) (Kendrin) 28 8.4
sp|Q9UDY2|ZO2_HUMAN Tight junction protein ZO-2 (Zonula occ... 28 8.4
sp|P41647|YCF1_PINTH Hypothetical 205.3 kDa protein ycf1 (O... 28 8.4
>sp|Q91VJ5|PQBP1_MOUSE Polyglutamine-binding protein 1 (Polyglutamine tract-binding
protein 1) (PQBP-1) (38 kDa nuclear protein containing a
WW domain) (Npw38)
Length = 263
Score = 42.4 bits (98), Expect = 3e-04
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +3
Query: 69 NLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVEDRD 176
NL+ D +H+ DR+H+ DR+H+ DRNH+ DR+
Sbjct: 106 NLEKVDRNHEKSDRSHEKPDRSHEKADRNHEKNDRE 141
Score = 37.0 bits (84), Expect = 0.014
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +3
Query: 42 KQLHKCQGVNLQVED-TDHQVE--DRNHQVEDRNHQVEDRNHQVEDRD 176
K K + N ED +D +E DRNH+ DR+H+ DR+H+ DR+
Sbjct: 87 KSAKKVRNNNADAEDKSDRNLEKVDRNHEKSDRSHEKPDRSHEKADRN 134
Score = 32.3 bits (72), Expect = 0.34
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 69 NLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQ 161
N + D H+ DR+H+ DRNH+ DR +
Sbjct: 113 NHEKSDRSHEKPDRSHEKADRNHEKNDRERE 143
>sp|Q6PCT5|PQBP1_RAT Polyglutamine-binding protein 1 (Polyglutamine tract-binding
protein 1) (PQBP-1)
Length = 263
Score = 42.4 bits (98), Expect = 3e-04
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +3
Query: 69 NLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVEDRD 176
NL+ D +H+ DR+H+ DR+H+ DRNH+ DR+
Sbjct: 106 NLEKVDRNHEKSDRSHEKPDRSHEKADRNHEKSDRE 141
Score = 32.3 bits (72), Expect = 0.34
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 69 NLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQ 161
N + D H+ DR+H+ DRNH+ DR +
Sbjct: 113 NHEKSDRSHEKPDRSHEKADRNHEKSDRERE 143
Score = 31.2 bits (69), Expect = 0.76
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 42 KQLHKCQGVNLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVEDR 173
K K + N ED +RN + DRNH+ DR+H+ DR
Sbjct: 87 KSAKKLRNSNADAEDKS----ERNLEKVDRNHEKSDRSHEKPDR 126
>sp|Q12114|CHS5_YEAST Chitin biosynthesis protein CHS5 (Protein CAL3)
Length = 671
Score = 38.5 bits (88), Expect = 0.005
Identities = 19/34 (55%), Positives = 21/34 (61%)
Frame = +3
Query: 69 NLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVED 170
N VED++ VED N VED N VED N VED
Sbjct: 496 NKPVEDSNKPVEDSNKPVEDSNKPVEDANEPVED 529
Score = 37.0 bits (84), Expect = 0.014
Identities = 18/34 (52%), Positives = 21/34 (61%)
Frame = +3
Query: 69 NLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVED 170
N VED++ VED N VED N VED + VED
Sbjct: 503 NKPVEDSNKPVEDSNKPVEDANEPVEDTSEPVED 536
Score = 36.6 bits (83), Expect = 0.018
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +3
Query: 66 VNLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVED 170
VN +ED + ED N VED N V+D N VED
Sbjct: 467 VNESIEDANEPAEDSNEPVEDSNKPVKDSNKPVED 501
Score = 36.6 bits (83), Expect = 0.018
Identities = 18/34 (52%), Positives = 21/34 (61%)
Frame = +3
Query: 69 NLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVED 170
N V+D++ VED N VED N VED N VED
Sbjct: 489 NKPVKDSNKPVEDSNKPVEDSNKPVEDSNKPVED 522
Score = 36.2 bits (82), Expect = 0.024
Identities = 18/34 (52%), Positives = 21/34 (61%)
Frame = +3
Query: 69 NLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVED 170
N VED++ V+D N VED N VED N VED
Sbjct: 482 NEPVEDSNKPVKDSNKPVEDSNKPVEDSNKPVED 515
Score = 35.4 bits (80), Expect = 0.040
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +3
Query: 60 QGVNLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVED 170
+ N ED++ VED N V+D N VED N VED
Sbjct: 472 EDANEPAEDSNEPVEDSNKPVKDSNKPVEDSNKPVED 508
Score = 32.3 bits (72), Expect = 0.34
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 69 NLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVED 170
N VED++ VED N VED + VED V++
Sbjct: 510 NKPVEDSNKPVEDANEPVEDTSEPVEDAGEPVQE 543
Score = 30.8 bits (68), Expect = 0.99
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 72 LQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVED 170
++ + + +ED N ED N VED N V+D
Sbjct: 462 IETPEVNESIEDANEPAEDSNEPVEDSNKPVKD 494
Score = 28.9 bits (63), Expect = 3.8
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Frame = +3
Query: 69 NLQVEDTDHQVEDRNHQVEDRNHQVEDRN----------HQVEDRDLK 182
N VED + VED + VED V++ N HQ ED +L+
Sbjct: 517 NKPVEDANEPVEDTSEPVEDAGEPVQETNEFTTDIASPRHQEEDIELE 564
>sp|O60828|PQBP1_HUMAN Polyglutamine-binding protein 1 (Polyglutamine tract-binding
protein 1) (PQBP-1) (38 kDa nuclear protein containing a
WW domain) (Npw38) (Protein JM26)
Length = 265
Score = 34.7 bits (78), Expect = 0.069
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 84 DTDHQVEDRNHQVEDRNHQVEDRNHQVEDRD 176
D H DR+H+ DR H DR H DRD
Sbjct: 111 DRGHDKSDRSHEKLDRGHDKSDRGHDKSDRD 141
Score = 33.5 bits (75), Expect = 0.15
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Frame = +3
Query: 42 KQLHKCQGVNLQVE---DTDHQVEDRNHQVEDRNHQVEDRNHQVEDR 173
K K + N E D H DR H DR+H+ DR H DR
Sbjct: 87 KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDR 133
>sp|Q9PW73|SOJO_XENLA Cytoskeletal protein Sojo (p170)
Length = 1335
Score = 31.2 bits (69), Expect = 0.76
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +3
Query: 54 KCQGVNLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVEDRDLKI 185
K + ++E+ DH+V D + ++DRN +++ R Q+ D+ I
Sbjct: 936 KLRSYKQELEERDHEVLDMDQLLKDRNWELKQRAAQLTQLDMSI 979
Score = 29.6 bits (65), Expect = 2.2
Identities = 11/38 (28%), Positives = 25/38 (65%)
Frame = +3
Query: 60 QGVNLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVEDR 173
QG+ ++ ++E+R+H+V D + ++DRN +++ R
Sbjct: 931 QGLTEKLRSYKQELEERDHEVLDMDQLLKDRNWELKQR 968
>sp|O35889|AFAD_RAT Afadin (Af-6 protein)
Length = 1829
Score = 28.1 bits (61), Expect = 6.4
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 102 EDRNHQVEDRNHQVEDRNHQVEDR 173
E R +VEDR Q ED HQ E+R
Sbjct: 1623 EMRKREVEDRVRQEEDGRHQEEER 1646
>sp|O95613|PCNT_HUMAN Pericentrin (Pericentrin B) (Kendrin)
Length = 3336
Score = 27.7 bits (60), Expect = 8.4
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +3
Query: 60 QGVNLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVE 167
+ ++LQ++ +HQV+ QV +H++E+ ++E
Sbjct: 1089 ESLSLQLQKKNHQVQQLKDQVLSLSHEIEECRSELE 1124
>sp|Q9UDY2|ZO2_HUMAN Tight junction protein ZO-2 (Zonula occludens 2 protein) (Zona
occludens 2 protein) (Tight junction protein 2)
Length = 1190
Score = 27.7 bits (60), Expect = 8.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 78 VEDTDHQVEDRNHQVEDRNHQVEDRNHQVEDRD 176
+ D+D ++ED + +R+ E+R HQ D D
Sbjct: 395 LNDSDSEIEDISEIESNRSFSPEERRHQYSDYD 427
>sp|P41647|YCF1_PINTH Hypothetical 205.3 kDa protein ycf1 (ORF 1756)
Length = 1756
Score = 27.7 bits (60), Expect = 8.4
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +3
Query: 69 NLQVEDTDHQVEDRNHQVEDRNHQVEDRNHQVEDR 173
N QVED +D+N QVED++ Q D++ QVED+
Sbjct: 1470 NKQVEDG----QDKNGQVEDQDGQ--DQDGQVEDQ 1498
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,221,536
Number of Sequences: 369166
Number of extensions: 101715
Number of successful extensions: 625
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 68,354,980
effective HSP length: 34
effective length of database: 62,073,990
effective search space used: 1675997730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)