Planarian EST Database

DrC_01097

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_01097 AATGTAATCGTGACGCCACATTCAGCCTATTTTAGTGAAGCATCATTCAGGGAATTACGA GAAGCAGCTGCTAATGAAGTTCGTCGTGCGATAACCACACGGATTCCTACGGAAAATCTC AGAAATTGTGTTAATAAAGAATATTTGTCTTATTACAATGGATCAAGAAACAATTCATCG GGACTCCAATTATCAGTACCGAACATGAATATCGGATTATCAAATACAGCACCAACTCTT ACTCCTGTATCACTACCACCGCATTTTGCAAGCCTCTCACATGGAGCATATCCTTTCTTG CCTCCAAATGCTTCATTAGCAACACTTAACAGTCTATCTGGATCACACACAGTTACATCT GCACCGATGTCCGTTTCTGGATCAAGTACCGGGATTGAGATGCAGTTGGCTGCCGCCGCT GCAGCTGCTCTCGTTAACAATCAAAGTACTATTGCTGGCATGCCACCTATTCCTCCGAGC TTGTCTAATCAAATCAGCAACAATCTCCAGTCATCCACTACTCCATCGAGCAGTACTTCC AATACAAATGCTAGTGTCAACAGTTAAAAGTCGTCGCAGATTTTGTTAAATTGCATTTGT GTTTTCTAGATATGTTTGTTTGTG

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01097
         (624 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P56545|CTBP2_HUMAN  C-terminal binding protein 2 (CtBP2)        65   1e-10
sp|P56546|CTBP2_MOUSE  C-terminal binding protein 2 (CtBP2)        65   1e-10
sp|O88712|CTBP1_MOUSE  C-terminal binding protein 1 (CtBP1)        64   4e-10
sp|Q13363|CTBP1_HUMAN  C-terminal binding protein 1 (CtBP1)        63   5e-10
sp|Q9Z2F5|CTBP1_RAT  C-terminal binding protein 1 (CtBP1) (C...    63   5e-10
sp|O46036|CTBP_DROME  C-terminal binding protein (CtBP prote...    61   2e-09
sp|Q9YHU0|CTBP_XENLA  C-terminal binding protein (CtBP)            59   8e-09
sp|Q9W758|CTBPB_XENLA  C-terminal binding protein B (TCF-3 c...    54   2e-07
sp|Q5B0L1|ATG15_EMENI  Putative lipase ATG15 (Autophagy-rela...    33   0.77 
sp|Q47748|VANH_ENTFA  D-specific alpha-keto acid dehydrogena...    32   1.7

>sp|P56545|CTBP2_HUMAN C-terminal binding protein 2 (CtBP2)
          Length = 445

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 32/47 (68%), Positives = 40/47 (85%)
 Frame = +1

Query: 1   NVIVTPHSAYFSEASFRELREAAANEVRRAITTRIPTENLRNCVNKE 141
           N+I TPH+A++SE +  E+REAAA E+RRAIT RIP E+LRNCVNKE
Sbjct: 315 NLICTPHTAWYSEQASLEMREAAATEIRRAITGRIP-ESLRNCVNKE 360

>sp|P56546|CTBP2_MOUSE C-terminal binding protein 2 (CtBP2)
          Length = 445

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 32/47 (68%), Positives = 40/47 (85%)
 Frame = +1

Query: 1   NVIVTPHSAYFSEASFRELREAAANEVRRAITTRIPTENLRNCVNKE 141
           N+I TPH+A++SE +  E+REAAA E+RRAIT RIP E+LRNCVNKE
Sbjct: 315 NLICTPHTAWYSEQASLEMREAAATEIRRAITGRIP-ESLRNCVNKE 360

>sp|O88712|CTBP1_MOUSE C-terminal binding protein 1 (CtBP1)
          Length = 440

 Score = 63.5 bits (153), Expect = 4e-10
 Identities = 45/115 (39%), Positives = 63/115 (54%), Gaps = 11/115 (9%)
 Frame = +1

Query: 1   NVIVTPHSAYFSEASFRELREAAANEVRRAITTRIPTENLRNCVNKEXXXXXXXXXXXXX 180
           N+I TPH+A++SE +  E+RE AA E+RRAIT RIP ++L+NCVNK+             
Sbjct: 309 NLICTPHAAWYSEQASIEMREEAAREIRRAITGRIP-DSLKNCVNKD--HLTAATHWASM 365

Query: 181 XXQLSVPNMN-------IGLSNTAPTLTPVS---LPPHFASLSHGAYPFL-PPNA 312
              +  P +N        G+ + APT  P +   + P   SLSHG  P   PP+A
Sbjct: 366 DPAVVHPELNGAAYRYPPGVVSVAPTGIPAAVEGIVPSAMSLSHGLPPVAHPPHA 420

>sp|Q13363|CTBP1_HUMAN C-terminal binding protein 1 (CtBP1)
          Length = 440

 Score = 63.2 bits (152), Expect = 5e-10
 Identities = 45/115 (39%), Positives = 62/115 (53%), Gaps = 11/115 (9%)
 Frame = +1

Query: 1   NVIVTPHSAYFSEASFRELREAAANEVRRAITTRIPTENLRNCVNKEXXXXXXXXXXXXX 180
           N+I TPH+A++SE +  E+RE AA E+RRAIT RIP ++L+NCVNK+             
Sbjct: 309 NLICTPHAAWYSEQASIEMREEAAREIRRAITGRIP-DSLKNCVNKD--HLTAATHWASM 365

Query: 181 XXQLSVPNMN-------IGLSNTAPTLTPVS---LPPHFASLSHGAYPFL-PPNA 312
              +  P +N        G+   APT  P +   + P   SLSHG  P   PP+A
Sbjct: 366 DPAVVHPELNGAAYRYPPGVVGVAPTGIPAAVEGIVPSAMSLSHGLPPVAHPPHA 420

>sp|Q9Z2F5|CTBP1_RAT C-terminal binding protein 1 (CtBP1) (C-terminal binding protein 3)
           (CtBP3) (50 kDa BFA-dependent ADP-ribosylation
           substrate) (BARS-50)
          Length = 430

 Score = 63.2 bits (152), Expect = 5e-10
 Identities = 45/116 (38%), Positives = 63/116 (54%), Gaps = 12/116 (10%)
 Frame = +1

Query: 1   NVIVTPHSAYFSEASFRELREAAANEVRRAITTRIPTENLRNCVNKEXXXXXXXXXXXXX 180
           N+I TPH+A++SE +  E+RE AA E+RRAIT RIP ++L+NCVNK+             
Sbjct: 298 NLICTPHAAWYSEQASIEMREEAAREIRRAITGRIP-DSLKNCVNKD--HLTAATHWASM 354

Query: 181 XXQLSVPNMN--------IGLSNTAPTLTPVS---LPPHFASLSHGAYPFL-PPNA 312
              +  P +N         G+ + APT  P +   + P   SLSHG  P   PP+A
Sbjct: 355 DPAVVHPELNGAAYSRYPPGVVSVAPTGIPAAVEGIVPSAMSLSHGLPPVAHPPHA 410

>sp|O46036|CTBP_DROME C-terminal binding protein (CtBP protein) (dCtBP)
          Length = 476

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 31/47 (65%), Positives = 37/47 (78%)
 Frame = +1

Query: 1   NVIVTPHSAYFSEASFRELREAAANEVRRAITTRIPTENLRNCVNKE 141
           N+I TPH+A+FS+AS  ELRE AA E+RRAI   IP + LRNCVNKE
Sbjct: 309 NLICTPHAAFFSDASATELREMAATEIRRAIVGNIP-DVLRNCVNKE 354

>sp|Q9YHU0|CTBP_XENLA C-terminal binding protein (CtBP)
          Length = 440

 Score = 59.3 bits (142), Expect = 8e-09
 Identities = 28/47 (59%), Positives = 39/47 (82%)
 Frame = +1

Query: 1   NVIVTPHSAYFSEASFRELREAAANEVRRAITTRIPTENLRNCVNKE 141
           N+I TPH+A++SE +  E+RE AA E+RRAIT RIP ++L+NCVNK+
Sbjct: 309 NLICTPHAAWYSEQASIEMREEAAREIRRAITGRIP-DSLKNCVNKD 354

>sp|Q9W758|CTBPB_XENLA C-terminal binding protein B (TCF-3 corepressor CtBP) (XCtBP)
          Length = 437

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 27/47 (57%), Positives = 36/47 (76%)
 Frame = +1

Query: 1   NVIVTPHSAYFSEASFRELREAAANEVRRAITTRIPTENLRNCVNKE 141
           N+I TPH+A++SE +  E RE AA E+RRAI   IP ++LRNCVNK+
Sbjct: 312 NLICTPHTAWYSEHASIEAREEAAKEIRRAIAGPIP-DSLRNCVNKD 357

>sp|Q5B0L1|ATG15_EMENI Putative lipase ATG15 (Autophagy-related protein 15)
          Length = 590

 Score = 32.7 bits (73), Expect = 0.77
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = +1

Query: 190 LSVPNMNIGLSNTAPTLTPVSLPPHFASLSHGAYPFLPPNASLATLNSLSGSHTVT 357
           LSV  + + L+   P+      P +F S    A PF+PP    A   SLSG+H  T
Sbjct: 3   LSVSTLLMSLALVLPSCVSAYQPVYFRSQE--ATPFIPPQVPSADPQSLSGTHEFT 56

>sp|Q47748|VANH_ENTFA D-specific alpha-keto acid dehydrogenase (Vancomycin B-type
           resistance protein vanHB)
          Length = 323

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 1   NVIVTPHSAYFSEASFRELREAAANEVRRAITTRIPTENLRNCVNKE 141
           NVI+TPH+AY++E   R+  E                + +RNC+N E
Sbjct: 287 NVIITPHTAYYTERVLRDTTE----------------KTIRNCLNFE 317

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,496,372
Number of Sequences: 369166
Number of extensions: 1239743
Number of successful extensions: 3624
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3615
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4926080070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01097

Planaria EST Database

DrC_01097

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail