Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_H09
(414 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8BGT6|MILK1_MOUSE Molecule interacting with Rab13 (MIRa... 31 1.1
sp|Q5B0L1|ATG15_EMENI Putative lipase ATG15 (Autophagy-rela... 30 1.9
sp|P44502|METB_HAEIN Cystathionine gamma-synthase (CGS) (O-... 30 2.5
sp|Q9UGJ1|GCP4_HUMAN Gamma-tubulin complex component 4 (GCP... 29 3.3
sp|Q9D4F8|GCP4_MOUSE Gamma-tubulin complex component 4 (GCP-4) 28 5.6
sp|Q5ZM71|FA48A_CHICK Protein FAM48A 28 7.3
sp|Q10280|GAF1_SCHPO Transcription factor gaf1 (Gaf-1) 28 7.3
sp|Q5U405|TMPSD_MOUSE Transmembrane protease, serine 13 (Mo... 28 7.3
sp|Q8VHK1|CSKI2_MOUSE Caskin-2 28 7.3
sp|P87060|POP1_SCHPO WD-repeat protein pop1 28 9.6
>sp|Q8BGT6|MILK1_MOUSE Molecule interacting with Rab13 (MIRab13) (MICAL-like protein 1)
Length = 870
Score = 30.8 bits (68), Expect = 1.1
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = +2
Query: 38 APTLTPVSLPPHFASLSHGAYPFLPPNASLA--TLNSLSGSHTVTSAPM 178
AP+ +P+++ H + LSH P P+ +L+ +L+S S SHT + P+
Sbjct: 492 APSASPLAI--HASRLSHSEPPSATPSPALSVESLSSESSSHTANAEPL 538
>sp|Q5B0L1|ATG15_EMENI Putative lipase ATG15 (Autophagy-related protein 15)
Length = 590
Score = 30.0 bits (66), Expect = 1.9
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 2 AVPNMNIGLSNTAPTLTPVSLPPHFASLSHGAYPFLPPNASLATLNSLSGSHTVT 166
+V + + L+ P+ P +F S A PF+PP A SLSG+H T
Sbjct: 4 SVSTLLMSLALVLPSCVSAYQPVYFRSQE--ATPFIPPQVPSADPQSLSGTHEFT 56
>sp|P44502|METB_HAEIN Cystathionine gamma-synthase (CGS) (O-succinylhomoserine
(Thiol)-lyase)
Length = 369
Score = 29.6 bits (65), Expect = 2.5
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = -1
Query: 216 NCISIPVLDPETDIGADVTVCDPDRLLSVANEAFGG---KKGYAPCERLA 76
N PVL D+GADV + + ++ N+A G KG C+R+A
Sbjct: 176 NTFLTPVLSRPLDLGADVVIHSGTKYIAGHNDALVGLIVAKGQELCDRIA 225
>sp|Q9UGJ1|GCP4_HUMAN Gamma-tubulin complex component 4 (GCP-4) (hGCP4) (h76p) (Hgrip76)
Length = 667
Score = 29.3 bits (64), Expect = 3.3
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +3
Query: 84 SHMEHILSCLQMLH*QHLTVYLDHTQLHLHRCPFLDQVPGLRCSWLPPLQLLSLTIKVLL 263
SH+ + L Q+L + V +H C L+ V C LPP++ ++ +L
Sbjct: 120 SHVNYFLDQFQLLFPSVMVVVEQIKSQKIHGCQILETVYKHSCGGLPPVR---SALEKIL 176
Query: 264 LACH 275
CH
Sbjct: 177 AVCH 180
>sp|Q9D4F8|GCP4_MOUSE Gamma-tubulin complex component 4 (GCP-4)
Length = 667
Score = 28.5 bits (62), Expect = 5.6
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +3
Query: 84 SHMEHILSCLQMLH*QHLTVYLDHTQLHLHRCPFLDQVPGLRCSWLPPLQLLSLTIKVLL 263
SH+ + L Q+L + V +H C L+ V C LPP++ ++ +L
Sbjct: 120 SHVNYSLDQFQLLFPSVMVVVEQIKSQKIHGCQILETVYKHSCGGLPPVR---SALEKIL 176
Query: 264 LACH 275
CH
Sbjct: 177 AVCH 180
>sp|Q5ZM71|FA48A_CHICK Protein FAM48A
Length = 687
Score = 28.1 bits (61), Expect = 7.3
Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +2
Query: 2 AVPNMNIGLSNTAPT--LTPVSLPPHFASLSHGAYPFLPPNAS-LATLNSLSGS 154
A+ I LS P+ L P +LP S S PF NAS L LN L GS
Sbjct: 568 AIAPAGINLSGILPSGGLVPSALPATMQSASQAGSPFGLKNASNLRPLNLLQGS 621
>sp|Q10280|GAF1_SCHPO Transcription factor gaf1 (Gaf-1)
Length = 855
Score = 28.1 bits (61), Expect = 7.3
Identities = 15/63 (23%), Positives = 27/63 (42%)
Frame = +2
Query: 29 SNTAPTLTPVSLPPHFASLSHGAYPFLPPNASLATLNSLSGSHTVTSAPMSVSGSSTGIE 208
SN + P+S P F S+ P PP+ + NS S + + ++P G++
Sbjct: 209 SNLDASALPISPPSDFFSVHSHNLPNAPPSIPANSNNSASPNQRIKASPKHADTDVLGLD 268
Query: 209 MQL 217
+
Sbjct: 269 FDM 271
>sp|Q5U405|TMPSD_MOUSE Transmembrane protease, serine 13 (Mosaic serine protease)
(Membrane-type mosaic serine protease)
Length = 543
Score = 28.1 bits (61), Expect = 7.3
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 29 SNTAPTLTPVSLPPHFASLSHGAYPFLPPNASLATLNSLSGSHTVTSAPMSV 184
+ T P +P PP AS + + PP+ S + +S + S + TS+P V
Sbjct: 44 ARTPPQASPARAPPPQASPARASPARAPPSRSSSGRSSSARSASTTSSPTRV 95
>sp|Q8VHK1|CSKI2_MOUSE Caskin-2
Length = 1201
Score = 28.1 bits (61), Expect = 7.3
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = +2
Query: 26 LSNTAPTLTPVSLPPHFASLSHGAYPFLPPNASLATLNSLSGSHTVTSAPMSVSGSS 196
L+ T+P+LTP P S + A PP L+S+SGS + P S+ G+S
Sbjct: 837 LARTSPSLTPTRGTPRSQSFALRARRKGPPPPPPKRLSSVSGS----TEPPSLDGTS 889
>sp|P87060|POP1_SCHPO WD-repeat protein pop1
Length = 775
Score = 27.7 bits (60), Expect = 9.6
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 12/59 (20%)
Frame = +2
Query: 8 PNMNIGLSNTAPTL------TPVSLPPHFASLSHGA------YPFLPPNASLATLNSLS 148
PN ++ S +P L T S PPH +S SH + Y F N S+ N LS
Sbjct: 187 PNNSVNYSYFSPNLLGNDSKTRQSFPPHSSSSSHNSLHEPVIYDFSSENPSIHPSNHLS 245
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,762,899
Number of Sequences: 369166
Number of extensions: 843354
Number of successful extensions: 2820
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2819
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1902516170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)