Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_K06
(606 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P56545|CTBP2_HUMAN C-terminal binding protein 2 (CtBP2) 65 1e-10
sp|P56546|CTBP2_MOUSE C-terminal binding protein 2 (CtBP2) 65 1e-10
sp|O88712|CTBP1_MOUSE C-terminal binding protein 1 (CtBP1) 64 4e-10
sp|Q13363|CTBP1_HUMAN C-terminal binding protein 1 (CtBP1) 63 5e-10
sp|Q9Z2F5|CTBP1_RAT C-terminal binding protein 1 (CtBP1) (C... 63 5e-10
sp|O46036|CTBP_DROME C-terminal binding protein (CtBP prote... 61 2e-09
sp|Q9YHU0|CTBP_XENLA C-terminal binding protein (CtBP) 59 7e-09
sp|Q9W758|CTBPB_XENLA C-terminal binding protein B (TCF-3 c... 54 2e-07
sp|Q5B0L1|ATG15_EMENI Putative lipase ATG15 (Autophagy-rela... 33 0.73
sp|Q47748|VANH_ENTFA D-specific alpha-keto acid dehydrogena... 32 1.6
>sp|P56545|CTBP2_HUMAN C-terminal binding protein 2 (CtBP2)
Length = 445
Score = 65.1 bits (157), Expect = 1e-10
Identities = 32/47 (68%), Positives = 40/47 (85%)
Frame = +1
Query: 1 NVIVTPHSAYFSEASFRELREAAANEVRRAITTRIPTENLRNCVNKE 141
N+I TPH+A++SE + E+REAAA E+RRAIT RIP E+LRNCVNKE
Sbjct: 315 NLICTPHTAWYSEQASLEMREAAATEIRRAITGRIP-ESLRNCVNKE 360
>sp|P56546|CTBP2_MOUSE C-terminal binding protein 2 (CtBP2)
Length = 445
Score = 65.1 bits (157), Expect = 1e-10
Identities = 32/47 (68%), Positives = 40/47 (85%)
Frame = +1
Query: 1 NVIVTPHSAYFSEASFRELREAAANEVRRAITTRIPTENLRNCVNKE 141
N+I TPH+A++SE + E+REAAA E+RRAIT RIP E+LRNCVNKE
Sbjct: 315 NLICTPHTAWYSEQASLEMREAAATEIRRAITGRIP-ESLRNCVNKE 360
>sp|O88712|CTBP1_MOUSE C-terminal binding protein 1 (CtBP1)
Length = 440
Score = 63.5 bits (153), Expect = 4e-10
Identities = 45/115 (39%), Positives = 63/115 (54%), Gaps = 11/115 (9%)
Frame = +1
Query: 1 NVIVTPHSAYFSEASFRELREAAANEVRRAITTRIPTENLRNCVNKEXXXXXXXXXXXXX 180
N+I TPH+A++SE + E+RE AA E+RRAIT RIP ++L+NCVNK+
Sbjct: 309 NLICTPHAAWYSEQASIEMREEAAREIRRAITGRIP-DSLKNCVNKD--HLTAATHWASM 365
Query: 181 XXQLSVPNMN-------IGLSNTAPTLTPVS---LPPHFASLSHGAYPFL-PPNA 312
+ P +N G+ + APT P + + P SLSHG P PP+A
Sbjct: 366 DPAVVHPELNGAAYRYPPGVVSVAPTGIPAAVEGIVPSAMSLSHGLPPVAHPPHA 420
>sp|Q13363|CTBP1_HUMAN C-terminal binding protein 1 (CtBP1)
Length = 440
Score = 63.2 bits (152), Expect = 5e-10
Identities = 45/115 (39%), Positives = 62/115 (53%), Gaps = 11/115 (9%)
Frame = +1
Query: 1 NVIVTPHSAYFSEASFRELREAAANEVRRAITTRIPTENLRNCVNKEXXXXXXXXXXXXX 180
N+I TPH+A++SE + E+RE AA E+RRAIT RIP ++L+NCVNK+
Sbjct: 309 NLICTPHAAWYSEQASIEMREEAAREIRRAITGRIP-DSLKNCVNKD--HLTAATHWASM 365
Query: 181 XXQLSVPNMN-------IGLSNTAPTLTPVS---LPPHFASLSHGAYPFL-PPNA 312
+ P +N G+ APT P + + P SLSHG P PP+A
Sbjct: 366 DPAVVHPELNGAAYRYPPGVVGVAPTGIPAAVEGIVPSAMSLSHGLPPVAHPPHA 420
>sp|Q9Z2F5|CTBP1_RAT C-terminal binding protein 1 (CtBP1) (C-terminal binding protein 3)
(CtBP3) (50 kDa BFA-dependent ADP-ribosylation
substrate) (BARS-50)
Length = 430
Score = 63.2 bits (152), Expect = 5e-10
Identities = 45/116 (38%), Positives = 63/116 (54%), Gaps = 12/116 (10%)
Frame = +1
Query: 1 NVIVTPHSAYFSEASFRELREAAANEVRRAITTRIPTENLRNCVNKEXXXXXXXXXXXXX 180
N+I TPH+A++SE + E+RE AA E+RRAIT RIP ++L+NCVNK+
Sbjct: 298 NLICTPHAAWYSEQASIEMREEAAREIRRAITGRIP-DSLKNCVNKD--HLTAATHWASM 354
Query: 181 XXQLSVPNMN--------IGLSNTAPTLTPVS---LPPHFASLSHGAYPFL-PPNA 312
+ P +N G+ + APT P + + P SLSHG P PP+A
Sbjct: 355 DPAVVHPELNGAAYSRYPPGVVSVAPTGIPAAVEGIVPSAMSLSHGLPPVAHPPHA 410
>sp|O46036|CTBP_DROME C-terminal binding protein (CtBP protein) (dCtBP)
Length = 476
Score = 61.2 bits (147), Expect = 2e-09
Identities = 31/47 (65%), Positives = 37/47 (78%)
Frame = +1
Query: 1 NVIVTPHSAYFSEASFRELREAAANEVRRAITTRIPTENLRNCVNKE 141
N+I TPH+A+FS+AS ELRE AA E+RRAI IP + LRNCVNKE
Sbjct: 309 NLICTPHAAFFSDASATELREMAATEIRRAIVGNIP-DVLRNCVNKE 354
>sp|Q9YHU0|CTBP_XENLA C-terminal binding protein (CtBP)
Length = 440
Score = 59.3 bits (142), Expect = 7e-09
Identities = 28/47 (59%), Positives = 39/47 (82%)
Frame = +1
Query: 1 NVIVTPHSAYFSEASFRELREAAANEVRRAITTRIPTENLRNCVNKE 141
N+I TPH+A++SE + E+RE AA E+RRAIT RIP ++L+NCVNK+
Sbjct: 309 NLICTPHAAWYSEQASIEMREEAAREIRRAITGRIP-DSLKNCVNKD 354
>sp|Q9W758|CTBPB_XENLA C-terminal binding protein B (TCF-3 corepressor CtBP) (XCtBP)
Length = 437
Score = 54.3 bits (129), Expect = 2e-07
Identities = 27/47 (57%), Positives = 36/47 (76%)
Frame = +1
Query: 1 NVIVTPHSAYFSEASFRELREAAANEVRRAITTRIPTENLRNCVNKE 141
N+I TPH+A++SE + E RE AA E+RRAI IP ++LRNCVNK+
Sbjct: 312 NLICTPHTAWYSEHASIEAREEAAKEIRRAIAGPIP-DSLRNCVNKD 357
>sp|Q5B0L1|ATG15_EMENI Putative lipase ATG15 (Autophagy-related protein 15)
Length = 590
Score = 32.7 bits (73), Expect = 0.73
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = +1
Query: 190 LSVPNMNIGLSNTAPTLTPVSLPPHFASLSHGAYPFLPPNASLATLNSLSGSHTVT 357
LSV + + L+ P+ P +F S A PF+PP A SLSG+H T
Sbjct: 3 LSVSTLLMSLALVLPSCVSAYQPVYFRSQE--ATPFIPPQVPSADPQSLSGTHEFT 56
>sp|Q47748|VANH_ENTFA D-specific alpha-keto acid dehydrogenase (Vancomycin B-type
resistance protein vanHB)
Length = 323
Score = 31.6 bits (70), Expect = 1.6
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 1 NVIVTPHSAYFSEASFRELREAAANEVRRAITTRIPTENLRNCVNKE 141
NVI+TPH+AY++E R+ E + +RNC+N E
Sbjct: 287 NVIITPHTAYYTERVLRDTTE----------------KTIRNCLNFE 317
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.315 0.127 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,522,683
Number of Sequences: 369166
Number of extensions: 1202546
Number of successful extensions: 3563
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3554
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4699949280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)