Planaria EST Database

DrC_01089

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01089
         (595 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P36241|RL19_DROME  60S ribosomal protein L19                   253   2e-67
sp|P84100|RL19_RAT  60S ribosomal protein L19 >gi|51338661|s...   244   1e-64
sp|Q7ZYS1|RL19_XENLA  60S ribosomal protein L19                   242   6e-64
sp|Q90YU8|RL19_ICTPU  60S ribosomal protein L19                   242   6e-64
sp|Q6P5L3|RL19_BRARE  60S ribosomal protein L19                   238   6e-63
sp|O02639|RL19_CAEEL  60S ribosomal protein L19                   236   2e-62
sp|Q9SRX2|RL19A_ARATH  60S ribosomal protein L19-1                227   2e-59
sp|P49693|RL19C_ARATH  60S ribosomal protein L19-3                226   3e-59
sp|Q9LUQ6|RL19B_ARATH  60S ribosomal protein L19-2                225   7e-59
sp|P05735|RL19_YEAST  60S ribosomal protein L19 (L23) (YL14)...   215   8e-56

>sp|P36241|RL19_DROME 60S ribosomal protein L19
          Length = 203

 Score =  253 bits (647), Expect = 2e-67
 Identities = 124/181 (68%), Positives = 145/181 (80%)
 Frame = +1

Query: 1   KRLAASVVGCGQNKIWLDPNENADIANANSRQSIRKLLKDGLIIRKPVKVHSRYRTRVKL 180
           KRLAASV+ CG+ K+WLDPNE  +IAN NSRQ+IRKL+KDGLII+KPV VHSRYR R   
Sbjct: 8   KRLAASVLRCGKKKVWLDPNEINEIANTNSRQNIRKLIKDGLIIKKPVVVHSRYRVRKNT 67

Query: 181 EARREGRHMGTGKRKGTANARMPVKIIWIRRMRVLRNLLKKYREGKKIDSHLYRKLYKMC 360
           EARR+GRH G GKRKGTANARMP K++W++R RVLR LLKKYR+ KKID HLY  LY  C
Sbjct: 68  EARRKGRHCGFGKRKGTANARMPTKLLWMQRQRVLRRLLKKYRDSKKIDRHLYHDLYMKC 127

Query: 361 KGNQFKNKRVLVEYIHRKKSDQARSKQLNDQAEALRAKKKETRLRKEARIAEKRAERIKR 540
           KGN FKNKRVL+EYIH+KK+++ RSK L DQAEA R K +E R R+E RIA K+ E I  
Sbjct: 128 KGNVFKNKRVLMEYIHKKKAEKQRSKMLADQAEARRQKVREARKRREERIATKKQELIAL 187

Query: 541 H 543
           H
Sbjct: 188 H 188

>sp|P84100|RL19_RAT 60S ribosomal protein L19
 sp|P84098|RL19_HUMAN 60S ribosomal protein L19
 sp|P84099|RL19_MOUSE 60S ribosomal protein L19
 sp|Q8HXN9|RL19_MACFA 60S ribosomal protein L19
          Length = 196

 Score =  244 bits (623), Expect = 1e-64
 Identities = 121/188 (64%), Positives = 145/188 (77%)
 Frame = +1

Query: 1   KRLAASVVGCGQNKIWLDPNENADIANANSRQSIRKLLKDGLIIRKPVKVHSRYRTRVKL 180
           KRLA+SV+ CG+ K+WLDPNE  +IANANSRQ IRKL+KDGLIIRKPV VHSR R R   
Sbjct: 8   KRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNT 67

Query: 181 EARREGRHMGTGKRKGTANARMPVKIIWIRRMRVLRNLLKKYREGKKIDSHLYRKLYKMC 360
            ARR+GRHMG GKRKGTANARMP K+ W+RRMR+LR LL++YRE KKID H+Y  LY   
Sbjct: 68  LARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKV 127

Query: 361 KGNQFKNKRVLVEYIHRKKSDQARSKQLNDQAEALRAKKKETRLRKEARIAEKRAERIKR 540
           KGN FKNKR+L+E+IH+ K+D+AR K L DQAEA R+K KE R R+E R+  K+ E IK 
Sbjct: 128 KGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKT 187

Query: 541 HETVEATE 564
               E T+
Sbjct: 188 LSKEEETK 195

>sp|Q7ZYS1|RL19_XENLA 60S ribosomal protein L19
          Length = 197

 Score =  242 bits (617), Expect = 6e-64
 Identities = 119/179 (66%), Positives = 142/179 (79%)
 Frame = +1

Query: 1   KRLAASVVGCGQNKIWLDPNENADIANANSRQSIRKLLKDGLIIRKPVKVHSRYRTRVKL 180
           KRLA+SV+ CG+ K+WLDPNE  +IANANSRQ IRKL+KDGLIIRKPV VHSR R R   
Sbjct: 8   KRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLVKDGLIIRKPVTVHSRARCRKNT 67

Query: 181 EARREGRHMGTGKRKGTANARMPVKIIWIRRMRVLRNLLKKYREGKKIDSHLYRKLYKMC 360
            ARR+GRHMG GKRKGTANARMP K+ W+RRMR+LR LL++YRE KKID H+Y  LY   
Sbjct: 68  LARRKGRHMGIGKRKGTANARMPEKLSWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKV 127

Query: 361 KGNQFKNKRVLVEYIHRKKSDQARSKQLNDQAEALRAKKKETRLRKEARIAEKRAERIK 537
           KGN FKNKR+L+E+IH+ K+D+AR K L DQAEA R+K KE R R+E R+  K+ E IK
Sbjct: 128 KGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIK 186

>sp|Q90YU8|RL19_ICTPU 60S ribosomal protein L19
          Length = 196

 Score =  242 bits (617), Expect = 6e-64
 Identities = 117/179 (65%), Positives = 144/179 (80%)
 Frame = +1

Query: 1   KRLAASVVGCGQNKIWLDPNENADIANANSRQSIRKLLKDGLIIRKPVKVHSRYRTRVKL 180
           KRLA+SV+ CG+ K+WLDPNE  +IANANSRQ+IRKL+KDGLII+KPV VHSR R R   
Sbjct: 8   KRLASSVLRCGKKKVWLDPNETNEIANANSRQAIRKLVKDGLIIKKPVTVHSRARCRKNT 67

Query: 181 EARREGRHMGTGKRKGTANARMPVKIIWIRRMRVLRNLLKKYREGKKIDSHLYRKLYKMC 360
            ARR+GRHMG GKRKGTANARMP K+ W+RRMR+LR LL++YRE KKID H+Y  LY   
Sbjct: 68  LARRKGRHMGIGKRKGTANARMPEKLCWMRRMRILRRLLRRYRESKKIDRHMYHSLYLRA 127

Query: 361 KGNQFKNKRVLVEYIHRKKSDQARSKQLNDQAEALRAKKKETRLRKEARIAEKRAERIK 537
           KGN FKNKR+L+E+IH+ K+D+AR K L+DQAEA R+K +E R R+E R+  K+ E IK
Sbjct: 128 KGNVFKNKRILMEHIHKLKADRARKKLLSDQAEARRSKTREARKRREERLQAKKEEIIK 186

>sp|Q6P5L3|RL19_BRARE 60S ribosomal protein L19
          Length = 196

 Score =  238 bits (608), Expect = 6e-63
 Identities = 117/179 (65%), Positives = 140/179 (78%)
 Frame = +1

Query: 1   KRLAASVVGCGQNKIWLDPNENADIANANSRQSIRKLLKDGLIIRKPVKVHSRYRTRVKL 180
           KRLA+SV+ CG+ K+WLDPNE  +IANANSRQ IRKL+KDGLII+KPV VHSR R R   
Sbjct: 8   KRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLVKDGLIIKKPVTVHSRARCRKNT 67

Query: 181 EARREGRHMGTGKRKGTANARMPVKIIWIRRMRVLRNLLKKYREGKKIDSHLYRKLYKMC 360
            ARR+GRHMG GKRKGTANARMP K+ W+RRMR+LR LL++YRE KKID H+Y  LY   
Sbjct: 68  LARRKGRHMGVGKRKGTANARMPEKLCWMRRMRILRRLLRRYREAKKIDRHMYHSLYLRA 127

Query: 361 KGNQFKNKRVLVEYIHRKKSDQARSKQLNDQAEALRAKKKETRLRKEARIAEKRAERIK 537
           KGN FKNKR+L+E+IH+ K+D+AR K L DQAEA R K +E R R+E R   K+ E IK
Sbjct: 128 KGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRTKTREARKRREERQQAKKEEIIK 186

>sp|O02639|RL19_CAEEL 60S ribosomal protein L19
          Length = 198

 Score =  236 bits (603), Expect = 2e-62
 Identities = 113/180 (62%), Positives = 146/180 (81%)
 Frame = +1

Query: 1   KRLAASVVGCGQNKIWLDPNENADIANANSRQSIRKLLKDGLIIRKPVKVHSRYRTRVKL 180
           KRLA++V+ CG++++WLDPNE ++I+ ANSRQSIR+L+ DGLIIRKPV VHSR+R R   
Sbjct: 8   KRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSRFRAREYE 67

Query: 181 EARREGRHMGTGKRKGTANARMPVKIIWIRRMRVLRNLLKKYREGKKIDSHLYRKLYKMC 360
           EARR+GRH G GKR+GTANARMP K +WIRRMRVLRNLL++YR+ KK+D HLY +LY   
Sbjct: 68  EARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHELYLRA 127

Query: 361 KGNQFKNKRVLVEYIHRKKSDQARSKQLNDQAEALRAKKKETRLRKEARIAEKRAERIKR 540
           KGN FKNK+ L+EYI +KK++  R+KQL DQA+A R K KE+R R+E R   KRAE +++
Sbjct: 128 KGNNFKNKKNLIEYIFKKKTENKRAKQLADQAQARRDKNKESRKRREERQVVKRAELLRK 187

>sp|Q9SRX2|RL19A_ARATH 60S ribosomal protein L19-1
          Length = 214

 Score =  227 bits (578), Expect = 2e-59
 Identities = 111/176 (63%), Positives = 137/176 (77%)
 Frame = +1

Query: 1   KRLAASVVGCGQNKIWLDPNENADIANANSRQSIRKLLKDGLIIRKPVKVHSRYRTRVKL 180
           KRLAASV+ CG+ K+WLDPNE++DI+ ANSRQ+IRKL+KDG IIRKP K+HSR R R   
Sbjct: 8   KRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARKMK 67

Query: 181 EARREGRHMGTGKRKGTANARMPVKIIWIRRMRVLRNLLKKYREGKKIDSHLYRKLYKMC 360
            A+ +GRH G GKRKGT  AR+P K++W+RRMRVLR LLKKYRE KKID H+Y  +Y   
Sbjct: 68  IAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRV 127

Query: 361 KGNQFKNKRVLVEYIHRKKSDQARSKQLNDQAEALRAKKKETRLRKEARIAEKRAE 528
           KGN FKNKRVL+E IH+ K+++AR K L+DQ EA RAK K +R RK AR  E+ A+
Sbjct: 128 KGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERLAK 183

>sp|P49693|RL19C_ARATH 60S ribosomal protein L19-3
          Length = 208

 Score =  226 bits (577), Expect = 3e-59
 Identities = 111/176 (63%), Positives = 137/176 (77%)
 Frame = +1

Query: 1   KRLAASVVGCGQNKIWLDPNENADIANANSRQSIRKLLKDGLIIRKPVKVHSRYRTRVKL 180
           KRLA+SV+ CG+ K+WLDPNE +DI+ ANSRQ+IRKL+KDG IIRKP K+HSR R R   
Sbjct: 8   KRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARQLN 67

Query: 181 EARREGRHMGTGKRKGTANARMPVKIIWIRRMRVLRNLLKKYREGKKIDSHLYRKLYKMC 360
            A+R+GRH G GKRKGT  AR+P K++W+RRMRVLR LLKKYRE KKID H+Y  +Y   
Sbjct: 68  IAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKV 127

Query: 361 KGNQFKNKRVLVEYIHRKKSDQARSKQLNDQAEALRAKKKETRLRKEARIAEKRAE 528
           KGN FKNKRVL+E IH+ K+++AR K L+DQ EA RAK K +R RK AR  E+ A+
Sbjct: 128 KGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERLAK 183

>sp|Q9LUQ6|RL19B_ARATH 60S ribosomal protein L19-2
          Length = 209

 Score =  225 bits (573), Expect = 7e-59
 Identities = 111/176 (63%), Positives = 134/176 (76%)
 Frame = +1

Query: 1   KRLAASVVGCGQNKIWLDPNENADIANANSRQSIRKLLKDGLIIRKPVKVHSRYRTRVKL 180
           KRLAASV+ CG+ K+WLDPNE+ DI+ ANSRQ+IRKL+KDG IIRKP K+HSR R R   
Sbjct: 8   KRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARALN 67

Query: 181 EARREGRHMGTGKRKGTANARMPVKIIWIRRMRVLRNLLKKYREGKKIDSHLYRKLYKMC 360
           EA+R+GRH G GKRKGT  AR+P KI+W+RRMRVLR  L KYRE KKID H+Y  +Y   
Sbjct: 68  EAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMKV 127

Query: 361 KGNQFKNKRVLVEYIHRKKSDQARSKQLNDQAEALRAKKKETRLRKEARIAEKRAE 528
           KGN FKNKRVL+E IH+ K+++AR K L DQ EA R K K +R RK AR  E+ A+
Sbjct: 128 KGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREERLAQ 183

>sp|P05735|RL19_YEAST 60S ribosomal protein L19 (L23) (YL14) (RP33) (RP15L)
          Length = 189

 Score =  215 bits (547), Expect = 8e-56
 Identities = 105/179 (58%), Positives = 134/179 (74%)
 Frame = +1

Query: 1   KRLAASVVGCGQNKIWLDPNENADIANANSRQSIRKLLKDGLIIRKPVKVHSRYRTRVKL 180
           KRLAASVVG G+ K+WLDPNE ++IA ANSR +IRKL+K+G I++K V VHS+ RTR   
Sbjct: 8   KRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHA 67

Query: 181 EARREGRHMGTGKRKGTANARMPVKIIWIRRMRVLRNLLKKYREGKKIDSHLYRKLYKMC 360
           +++REGRH G GKRKGT  AR+P +++WIRR+RVLR LL KYR+  KID HLY  LYK  
Sbjct: 68  QSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKES 127

Query: 361 KGNQFKNKRVLVEYIHRKKSDQARSKQLNDQAEALRAKKKETRLRKEARIAEKRAERIK 537
           KGN FK+KR LVE+I + K+D  R K LN++AEA R K +  R R+  R+AEKR   +K
Sbjct: 128 KGNAFKHKRALVEHIIQAKADAQREKALNEEAEARRLKNRAARDRRAQRVAEKRDALLK 186

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,535,077
Number of Sequences: 369166
Number of extensions: 1057930
Number of successful extensions: 3425
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3396
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4504118060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01089

  1. Dr_sW_027_I03
  2. Dr_sW_010_N14