Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_I03
(595 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P36241|RL19_DROME 60S ribosomal protein L19 253 2e-67
sp|P84100|RL19_RAT 60S ribosomal protein L19 >gi|51338661|s... 244 1e-64
sp|Q7ZYS1|RL19_XENLA 60S ribosomal protein L19 242 6e-64
sp|Q90YU8|RL19_ICTPU 60S ribosomal protein L19 242 6e-64
sp|Q6P5L3|RL19_BRARE 60S ribosomal protein L19 238 6e-63
sp|O02639|RL19_CAEEL 60S ribosomal protein L19 236 2e-62
sp|Q9SRX2|RL19A_ARATH 60S ribosomal protein L19-1 227 2e-59
sp|P49693|RL19C_ARATH 60S ribosomal protein L19-3 226 3e-59
sp|Q9LUQ6|RL19B_ARATH 60S ribosomal protein L19-2 225 7e-59
sp|P05735|RL19_YEAST 60S ribosomal protein L19 (L23) (YL14)... 215 8e-56
>sp|P36241|RL19_DROME 60S ribosomal protein L19
Length = 203
Score = 253 bits (647), Expect = 2e-67
Identities = 124/181 (68%), Positives = 145/181 (80%)
Frame = +1
Query: 1 KRLAASVVGCGQNKIWLDPNENADIANANSRQSIRKLLKDGLIIRKPVKVHSRYRTRVKL 180
KRLAASV+ CG+ K+WLDPNE +IAN NSRQ+IRKL+KDGLII+KPV VHSRYR R
Sbjct: 8 KRLAASVLRCGKKKVWLDPNEINEIANTNSRQNIRKLIKDGLIIKKPVVVHSRYRVRKNT 67
Query: 181 EARREGRHMGTGKRKGTANARMPVKIIWIRRMRVLRNLLKKYREGKKIDSHLYRKLYKMC 360
EARR+GRH G GKRKGTANARMP K++W++R RVLR LLKKYR+ KKID HLY LY C
Sbjct: 68 EARRKGRHCGFGKRKGTANARMPTKLLWMQRQRVLRRLLKKYRDSKKIDRHLYHDLYMKC 127
Query: 361 KGNQFKNKRVLVEYIHRKKSDQARSKQLNDQAEALRAKKKETRLRKEARIAEKRAERIKR 540
KGN FKNKRVL+EYIH+KK+++ RSK L DQAEA R K +E R R+E RIA K+ E I
Sbjct: 128 KGNVFKNKRVLMEYIHKKKAEKQRSKMLADQAEARRQKVREARKRREERIATKKQELIAL 187
Query: 541 H 543
H
Sbjct: 188 H 188
>sp|P84100|RL19_RAT 60S ribosomal protein L19
sp|P84098|RL19_HUMAN 60S ribosomal protein L19
sp|P84099|RL19_MOUSE 60S ribosomal protein L19
sp|Q8HXN9|RL19_MACFA 60S ribosomal protein L19
Length = 196
Score = 244 bits (623), Expect = 1e-64
Identities = 121/188 (64%), Positives = 145/188 (77%)
Frame = +1
Query: 1 KRLAASVVGCGQNKIWLDPNENADIANANSRQSIRKLLKDGLIIRKPVKVHSRYRTRVKL 180
KRLA+SV+ CG+ K+WLDPNE +IANANSRQ IRKL+KDGLIIRKPV VHSR R R
Sbjct: 8 KRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNT 67
Query: 181 EARREGRHMGTGKRKGTANARMPVKIIWIRRMRVLRNLLKKYREGKKIDSHLYRKLYKMC 360
ARR+GRHMG GKRKGTANARMP K+ W+RRMR+LR LL++YRE KKID H+Y LY
Sbjct: 68 LARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKV 127
Query: 361 KGNQFKNKRVLVEYIHRKKSDQARSKQLNDQAEALRAKKKETRLRKEARIAEKRAERIKR 540
KGN FKNKR+L+E+IH+ K+D+AR K L DQAEA R+K KE R R+E R+ K+ E IK
Sbjct: 128 KGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKT 187
Query: 541 HETVEATE 564
E T+
Sbjct: 188 LSKEEETK 195
>sp|Q7ZYS1|RL19_XENLA 60S ribosomal protein L19
Length = 197
Score = 242 bits (617), Expect = 6e-64
Identities = 119/179 (66%), Positives = 142/179 (79%)
Frame = +1
Query: 1 KRLAASVVGCGQNKIWLDPNENADIANANSRQSIRKLLKDGLIIRKPVKVHSRYRTRVKL 180
KRLA+SV+ CG+ K+WLDPNE +IANANSRQ IRKL+KDGLIIRKPV VHSR R R
Sbjct: 8 KRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLVKDGLIIRKPVTVHSRARCRKNT 67
Query: 181 EARREGRHMGTGKRKGTANARMPVKIIWIRRMRVLRNLLKKYREGKKIDSHLYRKLYKMC 360
ARR+GRHMG GKRKGTANARMP K+ W+RRMR+LR LL++YRE KKID H+Y LY
Sbjct: 68 LARRKGRHMGIGKRKGTANARMPEKLSWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKV 127
Query: 361 KGNQFKNKRVLVEYIHRKKSDQARSKQLNDQAEALRAKKKETRLRKEARIAEKRAERIK 537
KGN FKNKR+L+E+IH+ K+D+AR K L DQAEA R+K KE R R+E R+ K+ E IK
Sbjct: 128 KGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIK 186
>sp|Q90YU8|RL19_ICTPU 60S ribosomal protein L19
Length = 196
Score = 242 bits (617), Expect = 6e-64
Identities = 117/179 (65%), Positives = 144/179 (80%)
Frame = +1
Query: 1 KRLAASVVGCGQNKIWLDPNENADIANANSRQSIRKLLKDGLIIRKPVKVHSRYRTRVKL 180
KRLA+SV+ CG+ K+WLDPNE +IANANSRQ+IRKL+KDGLII+KPV VHSR R R
Sbjct: 8 KRLASSVLRCGKKKVWLDPNETNEIANANSRQAIRKLVKDGLIIKKPVTVHSRARCRKNT 67
Query: 181 EARREGRHMGTGKRKGTANARMPVKIIWIRRMRVLRNLLKKYREGKKIDSHLYRKLYKMC 360
ARR+GRHMG GKRKGTANARMP K+ W+RRMR+LR LL++YRE KKID H+Y LY
Sbjct: 68 LARRKGRHMGIGKRKGTANARMPEKLCWMRRMRILRRLLRRYRESKKIDRHMYHSLYLRA 127
Query: 361 KGNQFKNKRVLVEYIHRKKSDQARSKQLNDQAEALRAKKKETRLRKEARIAEKRAERIK 537
KGN FKNKR+L+E+IH+ K+D+AR K L+DQAEA R+K +E R R+E R+ K+ E IK
Sbjct: 128 KGNVFKNKRILMEHIHKLKADRARKKLLSDQAEARRSKTREARKRREERLQAKKEEIIK 186
>sp|Q6P5L3|RL19_BRARE 60S ribosomal protein L19
Length = 196
Score = 238 bits (608), Expect = 6e-63
Identities = 117/179 (65%), Positives = 140/179 (78%)
Frame = +1
Query: 1 KRLAASVVGCGQNKIWLDPNENADIANANSRQSIRKLLKDGLIIRKPVKVHSRYRTRVKL 180
KRLA+SV+ CG+ K+WLDPNE +IANANSRQ IRKL+KDGLII+KPV VHSR R R
Sbjct: 8 KRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLVKDGLIIKKPVTVHSRARCRKNT 67
Query: 181 EARREGRHMGTGKRKGTANARMPVKIIWIRRMRVLRNLLKKYREGKKIDSHLYRKLYKMC 360
ARR+GRHMG GKRKGTANARMP K+ W+RRMR+LR LL++YRE KKID H+Y LY
Sbjct: 68 LARRKGRHMGVGKRKGTANARMPEKLCWMRRMRILRRLLRRYREAKKIDRHMYHSLYLRA 127
Query: 361 KGNQFKNKRVLVEYIHRKKSDQARSKQLNDQAEALRAKKKETRLRKEARIAEKRAERIK 537
KGN FKNKR+L+E+IH+ K+D+AR K L DQAEA R K +E R R+E R K+ E IK
Sbjct: 128 KGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRTKTREARKRREERQQAKKEEIIK 186
>sp|O02639|RL19_CAEEL 60S ribosomal protein L19
Length = 198
Score = 236 bits (603), Expect = 2e-62
Identities = 113/180 (62%), Positives = 146/180 (81%)
Frame = +1
Query: 1 KRLAASVVGCGQNKIWLDPNENADIANANSRQSIRKLLKDGLIIRKPVKVHSRYRTRVKL 180
KRLA++V+ CG++++WLDPNE ++I+ ANSRQSIR+L+ DGLIIRKPV VHSR+R R
Sbjct: 8 KRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSRFRAREYE 67
Query: 181 EARREGRHMGTGKRKGTANARMPVKIIWIRRMRVLRNLLKKYREGKKIDSHLYRKLYKMC 360
EARR+GRH G GKR+GTANARMP K +WIRRMRVLRNLL++YR+ KK+D HLY +LY
Sbjct: 68 EARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHELYLRA 127
Query: 361 KGNQFKNKRVLVEYIHRKKSDQARSKQLNDQAEALRAKKKETRLRKEARIAEKRAERIKR 540
KGN FKNK+ L+EYI +KK++ R+KQL DQA+A R K KE+R R+E R KRAE +++
Sbjct: 128 KGNNFKNKKNLIEYIFKKKTENKRAKQLADQAQARRDKNKESRKRREERQVVKRAELLRK 187
>sp|Q9SRX2|RL19A_ARATH 60S ribosomal protein L19-1
Length = 214
Score = 227 bits (578), Expect = 2e-59
Identities = 111/176 (63%), Positives = 137/176 (77%)
Frame = +1
Query: 1 KRLAASVVGCGQNKIWLDPNENADIANANSRQSIRKLLKDGLIIRKPVKVHSRYRTRVKL 180
KRLAASV+ CG+ K+WLDPNE++DI+ ANSRQ+IRKL+KDG IIRKP K+HSR R R
Sbjct: 8 KRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARKMK 67
Query: 181 EARREGRHMGTGKRKGTANARMPVKIIWIRRMRVLRNLLKKYREGKKIDSHLYRKLYKMC 360
A+ +GRH G GKRKGT AR+P K++W+RRMRVLR LLKKYRE KKID H+Y +Y
Sbjct: 68 IAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRV 127
Query: 361 KGNQFKNKRVLVEYIHRKKSDQARSKQLNDQAEALRAKKKETRLRKEARIAEKRAE 528
KGN FKNKRVL+E IH+ K+++AR K L+DQ EA RAK K +R RK AR E+ A+
Sbjct: 128 KGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERLAK 183
>sp|P49693|RL19C_ARATH 60S ribosomal protein L19-3
Length = 208
Score = 226 bits (577), Expect = 3e-59
Identities = 111/176 (63%), Positives = 137/176 (77%)
Frame = +1
Query: 1 KRLAASVVGCGQNKIWLDPNENADIANANSRQSIRKLLKDGLIIRKPVKVHSRYRTRVKL 180
KRLA+SV+ CG+ K+WLDPNE +DI+ ANSRQ+IRKL+KDG IIRKP K+HSR R R
Sbjct: 8 KRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARQLN 67
Query: 181 EARREGRHMGTGKRKGTANARMPVKIIWIRRMRVLRNLLKKYREGKKIDSHLYRKLYKMC 360
A+R+GRH G GKRKGT AR+P K++W+RRMRVLR LLKKYRE KKID H+Y +Y
Sbjct: 68 IAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKV 127
Query: 361 KGNQFKNKRVLVEYIHRKKSDQARSKQLNDQAEALRAKKKETRLRKEARIAEKRAE 528
KGN FKNKRVL+E IH+ K+++AR K L+DQ EA RAK K +R RK AR E+ A+
Sbjct: 128 KGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERLAK 183
>sp|Q9LUQ6|RL19B_ARATH 60S ribosomal protein L19-2
Length = 209
Score = 225 bits (573), Expect = 7e-59
Identities = 111/176 (63%), Positives = 134/176 (76%)
Frame = +1
Query: 1 KRLAASVVGCGQNKIWLDPNENADIANANSRQSIRKLLKDGLIIRKPVKVHSRYRTRVKL 180
KRLAASV+ CG+ K+WLDPNE+ DI+ ANSRQ+IRKL+KDG IIRKP K+HSR R R
Sbjct: 8 KRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARALN 67
Query: 181 EARREGRHMGTGKRKGTANARMPVKIIWIRRMRVLRNLLKKYREGKKIDSHLYRKLYKMC 360
EA+R+GRH G GKRKGT AR+P KI+W+RRMRVLR L KYRE KKID H+Y +Y
Sbjct: 68 EAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMKV 127
Query: 361 KGNQFKNKRVLVEYIHRKKSDQARSKQLNDQAEALRAKKKETRLRKEARIAEKRAE 528
KGN FKNKRVL+E IH+ K+++AR K L DQ EA R K K +R RK AR E+ A+
Sbjct: 128 KGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREERLAQ 183
>sp|P05735|RL19_YEAST 60S ribosomal protein L19 (L23) (YL14) (RP33) (RP15L)
Length = 189
Score = 215 bits (547), Expect = 8e-56
Identities = 105/179 (58%), Positives = 134/179 (74%)
Frame = +1
Query: 1 KRLAASVVGCGQNKIWLDPNENADIANANSRQSIRKLLKDGLIIRKPVKVHSRYRTRVKL 180
KRLAASVVG G+ K+WLDPNE ++IA ANSR +IRKL+K+G I++K V VHS+ RTR
Sbjct: 8 KRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHA 67
Query: 181 EARREGRHMGTGKRKGTANARMPVKIIWIRRMRVLRNLLKKYREGKKIDSHLYRKLYKMC 360
+++REGRH G GKRKGT AR+P +++WIRR+RVLR LL KYR+ KID HLY LYK
Sbjct: 68 QSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKES 127
Query: 361 KGNQFKNKRVLVEYIHRKKSDQARSKQLNDQAEALRAKKKETRLRKEARIAEKRAERIK 537
KGN FK+KR LVE+I + K+D R K LN++AEA R K + R R+ R+AEKR +K
Sbjct: 128 KGNAFKHKRALVEHIIQAKADAQREKALNEEAEARRLKNRAARDRRAQRVAEKRDALLK 186
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,535,077
Number of Sequences: 369166
Number of extensions: 1057930
Number of successful extensions: 3425
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3396
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4504118060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)