Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_N14
(438 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P36241|RL19_DROME 60S ribosomal protein L19 172 2e-43
sp|P84100|RL19_RAT 60S ribosomal protein L19 >gi|51338661|s... 161 5e-40
sp|O02639|RL19_CAEEL 60S ribosomal protein L19 160 1e-39
sp|Q90YU8|RL19_ICTPU 60S ribosomal protein L19 160 1e-39
sp|Q7ZYS1|RL19_XENLA 60S ribosomal protein L19 159 2e-39
sp|Q6P5L3|RL19_BRARE 60S ribosomal protein L19 157 9e-39
sp|P49693|RL19C_ARATH 60S ribosomal protein L19-3 146 2e-35
sp|Q9SRX2|RL19A_ARATH 60S ribosomal protein L19-1 145 4e-35
sp|Q9LUQ6|RL19B_ARATH 60S ribosomal protein L19-2 144 1e-34
sp|P05735|RL19_YEAST 60S ribosomal protein L19 (L23) (YL14)... 143 1e-34
>sp|P36241|RL19_DROME 60S ribosomal protein L19
Length = 203
Score = 172 bits (437), Expect = 2e-43
Identities = 84/128 (65%), Positives = 98/128 (76%)
Frame = +3
Query: 3 YRTRVKLEARREGRHMGTGKRKGTANARMPVKIIWIRRMRVLRNLLKKYREGKKIDSHLY 182
YR R EARR+GRH G GKRKGTANARMP K++W++R RVLR LLKKYR+ KKID HLY
Sbjct: 61 YRVRKNTEARRKGRHCGFGKRKGTANARMPTKLLWMQRQRVLRRLLKKYRDSKKIDRHLY 120
Query: 183 RKLYKMCKGNQFKNKRVLVEYIHRKKSDQARSKQLNDQAEALRAKKKETRLRKEARIAEK 362
LY CKGN FKNKRVL+EYIH+KK+++ RSK L DQAEA R K +E R R+E RIA K
Sbjct: 121 HDLYMKCKGNVFKNKRVLMEYIHKKKAEKQRSKMLADQAEARRQKVREARKRREERIATK 180
Query: 363 RAERIKRH 386
+ E I H
Sbjct: 181 KQELIALH 188
>sp|P84100|RL19_RAT 60S ribosomal protein L19
sp|P84098|RL19_HUMAN 60S ribosomal protein L19
sp|P84099|RL19_MOUSE 60S ribosomal protein L19
sp|Q8HXN9|RL19_MACFA 60S ribosomal protein L19
Length = 196
Score = 161 bits (408), Expect = 5e-40
Identities = 80/134 (59%), Positives = 98/134 (73%)
Frame = +3
Query: 6 RTRVKLEARREGRHMGTGKRKGTANARMPVKIIWIRRMRVLRNLLKKYREGKKIDSHLYR 185
R R ARR+GRHMG GKRKGTANARMP K+ W+RRMR+LR LL++YRE KKID H+Y
Sbjct: 62 RCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYH 121
Query: 186 KLYKMCKGNQFKNKRVLVEYIHRKKSDQARSKQLNDQAEALRAKKKETRLRKEARIAEKR 365
LY KGN FKNKR+L+E+IH+ K+D+AR K L DQAEA R+K KE R R+E R+ K+
Sbjct: 122 SLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKK 181
Query: 366 AERIKRHETVEATE 407
E IK E T+
Sbjct: 182 EEIIKTLSKEEETK 195
>sp|O02639|RL19_CAEEL 60S ribosomal protein L19
Length = 198
Score = 160 bits (405), Expect = 1e-39
Identities = 77/127 (60%), Positives = 98/127 (77%)
Frame = +3
Query: 3 YRTRVKLEARREGRHMGTGKRKGTANARMPVKIIWIRRMRVLRNLLKKYREGKKIDSHLY 182
+R R EARR+GRH G GKR+GTANARMP K +WIRRMRVLRNLL++YR+ KK+D HLY
Sbjct: 61 FRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLY 120
Query: 183 RKLYKMCKGNQFKNKRVLVEYIHRKKSDQARSKQLNDQAEALRAKKKETRLRKEARIAEK 362
+LY KGN FKNK+ L+EYI +KK++ R+KQL DQA+A R K KE+R R+E R K
Sbjct: 121 HELYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQAQARRDKNKESRKRREERQVVK 180
Query: 363 RAERIKR 383
RAE +++
Sbjct: 181 RAELLRK 187
>sp|Q90YU8|RL19_ICTPU 60S ribosomal protein L19
Length = 196
Score = 160 bits (405), Expect = 1e-39
Identities = 77/125 (61%), Positives = 96/125 (76%)
Frame = +3
Query: 6 RTRVKLEARREGRHMGTGKRKGTANARMPVKIIWIRRMRVLRNLLKKYREGKKIDSHLYR 185
R R ARR+GRHMG GKRKGTANARMP K+ W+RRMR+LR LL++YRE KKID H+Y
Sbjct: 62 RCRKNTLARRKGRHMGIGKRKGTANARMPEKLCWMRRMRILRRLLRRYRESKKIDRHMYH 121
Query: 186 KLYKMCKGNQFKNKRVLVEYIHRKKSDQARSKQLNDQAEALRAKKKETRLRKEARIAEKR 365
LY KGN FKNKR+L+E+IH+ K+D+AR K L+DQAEA R+K +E R R+E R+ K+
Sbjct: 122 SLYLRAKGNVFKNKRILMEHIHKLKADRARKKLLSDQAEARRSKTREARKRREERLQAKK 181
Query: 366 AERIK 380
E IK
Sbjct: 182 EEIIK 186
>sp|Q7ZYS1|RL19_XENLA 60S ribosomal protein L19
Length = 197
Score = 159 bits (403), Expect = 2e-39
Identities = 78/125 (62%), Positives = 95/125 (76%)
Frame = +3
Query: 6 RTRVKLEARREGRHMGTGKRKGTANARMPVKIIWIRRMRVLRNLLKKYREGKKIDSHLYR 185
R R ARR+GRHMG GKRKGTANARMP K+ W+RRMR+LR LL++YRE KKID H+Y
Sbjct: 62 RCRKNTLARRKGRHMGIGKRKGTANARMPEKLSWMRRMRILRRLLRRYRESKKIDRHMYH 121
Query: 186 KLYKMCKGNQFKNKRVLVEYIHRKKSDQARSKQLNDQAEALRAKKKETRLRKEARIAEKR 365
LY KGN FKNKR+L+E+IH+ K+D+AR K L DQAEA R+K KE R R+E R+ K+
Sbjct: 122 SLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKK 181
Query: 366 AERIK 380
E IK
Sbjct: 182 EEIIK 186
>sp|Q6P5L3|RL19_BRARE 60S ribosomal protein L19
Length = 196
Score = 157 bits (397), Expect = 9e-39
Identities = 77/125 (61%), Positives = 93/125 (74%)
Frame = +3
Query: 6 RTRVKLEARREGRHMGTGKRKGTANARMPVKIIWIRRMRVLRNLLKKYREGKKIDSHLYR 185
R R ARR+GRHMG GKRKGTANARMP K+ W+RRMR+LR LL++YRE KKID H+Y
Sbjct: 62 RCRKNTLARRKGRHMGVGKRKGTANARMPEKLCWMRRMRILRRLLRRYREAKKIDRHMYH 121
Query: 186 KLYKMCKGNQFKNKRVLVEYIHRKKSDQARSKQLNDQAEALRAKKKETRLRKEARIAEKR 365
LY KGN FKNKR+L+E+IH+ K+D+AR K L DQAEA R K +E R R+E R K+
Sbjct: 122 SLYLRAKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRTKTREARKRREERQQAKK 181
Query: 366 AERIK 380
E IK
Sbjct: 182 EEIIK 186
>sp|P49693|RL19C_ARATH 60S ribosomal protein L19-3
Length = 208
Score = 146 bits (369), Expect = 2e-35
Identities = 71/115 (61%), Positives = 88/115 (76%)
Frame = +3
Query: 27 ARREGRHMGTGKRKGTANARMPVKIIWIRRMRVLRNLLKKYREGKKIDSHLYRKLYKMCK 206
A+R+GRH G GKRKGT AR+P K++W+RRMRVLR LLKKYRE KKID H+Y +Y K
Sbjct: 69 AKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKVK 128
Query: 207 GNQFKNKRVLVEYIHRKKSDQARSKQLNDQAEALRAKKKETRLRKEARIAEKRAE 371
GN FKNKRVL+E IH+ K+++AR K L+DQ EA RAK K +R RK AR E+ A+
Sbjct: 129 GNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERLAK 183
>sp|Q9SRX2|RL19A_ARATH 60S ribosomal protein L19-1
Length = 214
Score = 145 bits (366), Expect = 4e-35
Identities = 72/122 (59%), Positives = 89/122 (72%)
Frame = +3
Query: 6 RTRVKLEARREGRHMGTGKRKGTANARMPVKIIWIRRMRVLRNLLKKYREGKKIDSHLYR 185
R R A+ +GRH G GKRKGT AR+P K++W+RRMRVLR LLKKYRE KKID H+Y
Sbjct: 62 RARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYH 121
Query: 186 KLYKMCKGNQFKNKRVLVEYIHRKKSDQARSKQLNDQAEALRAKKKETRLRKEARIAEKR 365
+Y KGN FKNKRVL+E IH+ K+++AR K L+DQ EA RAK K +R RK AR E+
Sbjct: 122 DMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERL 181
Query: 366 AE 371
A+
Sbjct: 182 AK 183
>sp|Q9LUQ6|RL19B_ARATH 60S ribosomal protein L19-2
Length = 209
Score = 144 bits (362), Expect = 1e-34
Identities = 72/122 (59%), Positives = 87/122 (71%)
Frame = +3
Query: 6 RTRVKLEARREGRHMGTGKRKGTANARMPVKIIWIRRMRVLRNLLKKYREGKKIDSHLYR 185
R R EA+R+GRH G GKRKGT AR+P KI+W+RRMRVLR L KYRE KKID H+Y
Sbjct: 62 RARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYH 121
Query: 186 KLYKMCKGNQFKNKRVLVEYIHRKKSDQARSKQLNDQAEALRAKKKETRLRKEARIAEKR 365
+Y KGN FKNKRVL+E IH+ K+++AR K L DQ EA R K K +R RK AR E+
Sbjct: 122 DMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREERL 181
Query: 366 AE 371
A+
Sbjct: 182 AQ 183
>sp|P05735|RL19_YEAST 60S ribosomal protein L19 (L23) (YL14) (RP33) (RP15L)
Length = 189
Score = 143 bits (361), Expect = 1e-34
Identities = 70/125 (56%), Positives = 89/125 (71%)
Frame = +3
Query: 6 RTRVKLEARREGRHMGTGKRKGTANARMPVKIIWIRRMRVLRNLLKKYREGKKIDSHLYR 185
RTR +++REGRH G GKRKGT AR+P +++WIRR+RVLR LL KYR+ KID HLY
Sbjct: 62 RTRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYH 121
Query: 186 KLYKMCKGNQFKNKRVLVEYIHRKKSDQARSKQLNDQAEALRAKKKETRLRKEARIAEKR 365
LYK KGN FK+KR LVE+I + K+D R K LN++AEA R K + R R+ R+AEKR
Sbjct: 122 VLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEEAEARRLKNRAARDRRAQRVAEKR 181
Query: 366 AERIK 380
+K
Sbjct: 182 DALLK 186
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,034,021
Number of Sequences: 369166
Number of extensions: 781666
Number of successful extensions: 2711
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2686
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2244666600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)