Planaria EST Database

DrC_01085

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01085
         (634 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P93099|RL13A_CYAPA  60S ribosomal protein L13a                 252   6e-67
sp|P40429|RL13A_HUMAN  60S ribosomal protein L13a (23 kDa hi...   250   2e-66
sp|Q5RA38|RL13A_PONPY  60S ribosomal protein L13a                 248   9e-66
sp|P19253|RL13A_MOUSE  60S ribosomal protein L13a (Transplan...   244   1e-64
sp|P35427|RL13A_RAT  60S ribosomal protein L13a                   242   5e-64
sp|Q91487|RL13A_SALTR  60S ribosomal protein L13a (Transplan...   234   1e-61
sp|Q9P720|RL16_NEUCR  60S ribosomal protein L16                   226   4e-59
sp|Q962U0|RL13A_SPOFR  60S ribosomal protein L13A                 221   1e-57
sp|Q8MUR4|RL13A_CHOPR  60S ribosomal protein L13A                 220   3e-57
sp|O42848|RL16A_SCHPO  60S ribosomal protein L16-A                219   5e-57

>sp|P93099|RL13A_CYAPA 60S ribosomal protein L13a
          Length = 200

 Score =  252 bits (643), Expect = 6e-67
 Identities = 122/198 (61%), Positives = 148/198 (74%)
 Frame = +1

Query: 13  EKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDINISGSFYRNKLKYQEFLKKRMN 192
           EKV+V+DC GHLLGRLA  +AK  L GQRVV VRTE+INISGS +RNKLK+  FLKKRMN
Sbjct: 3   EKVVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMN 62

Query: 193 TNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSA 372
           TNP RGPFH RSP++I+WRTIRGMIPHKT RGAAAL+++K FEGVP PYDKMK+  IP A
Sbjct: 63  TNPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQA 122

Query: 373 LRVIRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSXXXXXXXXXXXXXX 552
           LRV+RLKP RKFC LGRL+ EVGW++  +V+ LEEKRK K+A +Y+              
Sbjct: 123 LRVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEEKRKTKSAAFYARKKTLVNLRAKAAV 182

Query: 553 XSSAKIAKYNDILAKFGY 606
             ++K A     L  +G+
Sbjct: 183 AVASKTANIQKELDHYGF 200

>sp|P40429|RL13A_HUMAN 60S ribosomal protein L13a (23 kDa highly basic protein)
          Length = 203

 Score =  250 bits (638), Expect = 2e-66
 Identities = 120/196 (61%), Positives = 147/196 (75%)
 Frame = +1

Query: 16  KVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDINISGSFYRNKLKYQEFLKKRMNT 195
           +VLV+D  GHLLGRLA  VAK  L G++VV+VR E INISG+FYRNKLKY  FL+KRMNT
Sbjct: 5   QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNT 64

Query: 196 NPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSAL 375
           NPSRGP+H R+PS+I WRT+RGM+PHKTKRG AALD++KVF+G+P PYDK K+  +P+AL
Sbjct: 65  NPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAAL 124

Query: 376 RVIRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSXXXXXXXXXXXXXXX 555
           +V+RLKP RKF  LGRL+HEVGWKYQ+V +TLEEKRK KA + Y                
Sbjct: 125 KVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKN 184

Query: 556 SSAKIAKYNDILAKFG 603
              KI KY ++L   G
Sbjct: 185 VEKKIDKYTEVLKTHG 200

>sp|Q5RA38|RL13A_PONPY 60S ribosomal protein L13a
          Length = 203

 Score =  248 bits (633), Expect = 9e-66
 Identities = 119/196 (60%), Positives = 147/196 (75%)
 Frame = +1

Query: 16  KVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDINISGSFYRNKLKYQEFLKKRMNT 195
           +VLV+D  GHLLGRLA  VAK  L G++VV+VR E INISG+FYRNKLKY  FL+KRMNT
Sbjct: 5   QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNT 64

Query: 196 NPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSAL 375
           +PSRGP+H R+PS+I WRT+RGM+PHKTKRG AALD++KVF+G+P PYDK K+  +P+AL
Sbjct: 65  SPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAAL 124

Query: 376 RVIRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSXXXXXXXXXXXXXXX 555
           +V+RLKP RKF  LGRL+HEVGWKYQ+V +TLEEKRK KA + Y                
Sbjct: 125 KVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLVRLRKQAEKN 184

Query: 556 SSAKIAKYNDILAKFG 603
              KI KY ++L   G
Sbjct: 185 VEKKIDKYTEVLKTHG 200

>sp|P19253|RL13A_MOUSE 60S ribosomal protein L13a (Transplantation antigen P198) (Tum-P198
           antigen)
          Length = 203

 Score =  244 bits (624), Expect = 1e-64
 Identities = 117/196 (59%), Positives = 146/196 (74%)
 Frame = +1

Query: 16  KVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDINISGSFYRNKLKYQEFLKKRMNT 195
           +VLV+D  GHLLGRLA  VAK  L G++VV+VR E INISG+FYRNKLKY  FL+KRMNT
Sbjct: 5   QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNT 64

Query: 196 NPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSAL 375
           NPSRGP+H R+PS+I WRT+RGM+PHKTKRG AAL+++KV +G+P PYDK K+  +P+AL
Sbjct: 65  NPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAAL 124

Query: 376 RVIRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSXXXXXXXXXXXXXXX 555
           +V+RLKP RKF  LGRL+HEVGWKYQ+V +TLEEKRK KA + Y                
Sbjct: 125 KVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKMHYRKKKQILRLRKQAEKN 184

Query: 556 SSAKIAKYNDILAKFG 603
              KI K+ ++L   G
Sbjct: 185 VEKKICKFTEVLKTNG 200

>sp|P35427|RL13A_RAT 60S ribosomal protein L13a
          Length = 203

 Score =  242 bits (618), Expect = 5e-64
 Identities = 116/196 (59%), Positives = 145/196 (73%)
 Frame = +1

Query: 16  KVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDINISGSFYRNKLKYQEFLKKRMNT 195
           +VLV+D   HLLGRLA  VAK  L G++VV+VR E INISG+FYRNKLKY  FL+KRMNT
Sbjct: 5   QVLVLDGRSHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNT 64

Query: 196 NPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSAL 375
           NPSRGP+H R+PS+I WRT+RGM+PHKTKRG AAL+++KV +G+P PYDK K+  +P+AL
Sbjct: 65  NPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAAL 124

Query: 376 RVIRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSXXXXXXXXXXXXXXX 555
           +V+RLKP RKF  LGRL+HEVGWKYQ+V +TLEEKRK KA + Y                
Sbjct: 125 KVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLLRLRKQAEKN 184

Query: 556 SSAKIAKYNDILAKFG 603
              KI K+ ++L   G
Sbjct: 185 VEKKICKFTEVLKTNG 200

>sp|Q91487|RL13A_SALTR 60S ribosomal protein L13a (Transplantation antigen P198 homolog)
          Length = 189

 Score =  234 bits (597), Expect = 1e-61
 Identities = 110/186 (59%), Positives = 140/186 (75%)
 Frame = +1

Query: 46  LLGRLATAVAKASLQGQRVVLVRTEDINISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLR 225
           LLGRLA  VA   L G +VV+VR E INISG+FYRNKLKY  FL+KRMNTNPSRGP+H R
Sbjct: 1   LLGRLAAIVANEVLLGHKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFR 60

Query: 226 SPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVIRLKPNRK 405
           +PS+I WRT+RGM+PHKTKRG AAL+++KVF+GVP PYDK K+  +P+AL+++RLKP RK
Sbjct: 61  APSRIFWRTVRGMLPHKTKRGQAALERLKVFDGVPPPYDKRKRMVVPAALKIVRLKPTRK 120

Query: 406 FCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSXXXXXXXXXXXXXXXSSAKIAKYND 585
           F  LGRL+HEVGWKYQ++ +TLEEKRK KA + Y+                 + I+KY  
Sbjct: 121 FALLGRLAHEVGWKYQAITATLEEKRKEKAKIRYAKKKTVTKLSKLAEKNVESTISKYTA 180

Query: 586 ILAKFG 603
           +L ++G
Sbjct: 181 VLKQYG 186

>sp|Q9P720|RL16_NEUCR 60S ribosomal protein L16
          Length = 202

 Score =  226 bits (576), Expect = 4e-59
 Identities = 118/207 (57%), Positives = 145/207 (70%), Gaps = 5/207 (2%)
 Frame = +1

Query: 1   MSVSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDINISGSFYRNKLKYQEFLK 180
           MS  E V+VID  GHLLGRLA+ VAK  L GQ++V+VR E +NISG F+R KLKY  +L+
Sbjct: 1   MSSFESVVVIDGKGHLLGRLASIVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHSYLR 60

Query: 181 KRMNTNPSRG-PFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKS 357
           K    NP+RG PFH R+PS+I ++ +RGMIPHKT RGAAAL+++KVFEGVP PYDK KK 
Sbjct: 61  KMTRYNPTRGGPFHFRAPSRIFYKAVRGMIPHKTARGAAALERLKVFEGVPPPYDKKKKM 120

Query: 358 CIPSALRVIRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSXXXXXXXXX 537
            +P ALRV+RL+P RKFC +GRLS EVGWKY+ VVS LEE+RKAK A +Y          
Sbjct: 121 VVPQALRVLRLQPGRKFCTVGRLSSEVGWKYEDVVSRLEERRKAKGAAYYE-----RKKV 175

Query: 538 XXXXXXSSAKIAKYND----ILAKFGY 606
                  + K AK ND     L +FGY
Sbjct: 176 AARQLSEAKKSAKVNDKTAEALKEFGY 202

>sp|Q962U0|RL13A_SPOFR 60S ribosomal protein L13A
          Length = 204

 Score =  221 bits (563), Expect = 1e-57
 Identities = 102/199 (51%), Positives = 137/199 (68%)
 Frame = +1

Query: 10  SEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDINISGSFYRNKLKYQEFLKKRM 189
           S K +VID  GHLLGRLA  +AK  L+G +VV+VR E INISG+F+RNKLK+  FL+KR 
Sbjct: 5   SNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRC 64

Query: 190 NTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPS 369
           N NP+RGPFH R+PSKI+W+T+RGMIPHKT+RG +AL +++ ++G P PYD  ++  +P+
Sbjct: 65  NVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKSALRRLRAYDGCPPPYDNRRRVVVPA 124

Query: 370 ALRVIRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSXXXXXXXXXXXXX 549
           ALRV  LKP RK+C +GRLSHEVGWKY+ VV  LE KRK K+    +             
Sbjct: 125 ALRVFCLKPGRKYCHVGRLSHEVGWKYRDVVRKLENKRKVKSVKLMAYEKKLKRITKESG 184

Query: 550 XXSSAKIAKYNDILAKFGY 606
              +   A +  ++  +GY
Sbjct: 185 EKVAKTTAPFTAVIQSYGY 203

>sp|Q8MUR4|RL13A_CHOPR 60S ribosomal protein L13A
          Length = 204

 Score =  220 bits (560), Expect = 3e-57
 Identities = 103/199 (51%), Positives = 137/199 (68%)
 Frame = +1

Query: 10  SEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDINISGSFYRNKLKYQEFLKKRM 189
           S K +VID  GHLLGRLA  +AK  L+G +VV+VR E +NISG+F+RNKLK+  FL+KR 
Sbjct: 5   SNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQLNISGNFFRNKLKFMSFLRKRC 64

Query: 190 NTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPS 369
           N NP+RGPFH R+PSKI+W+T+RGMIPHKT+RG  AL +++ ++G P PYD  ++  +P+
Sbjct: 65  NVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKDALRRLRSYDGCPPPYDNRRRVVVPA 124

Query: 370 ALRVIRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSXXXXXXXXXXXXX 549
           ALRV  LKP RK+C +GRLSHEVGWKY+ VV  LE+KRK KA    +             
Sbjct: 125 ALRVFCLKPGRKYCHVGRLSHEVGWKYREVVRKLEDKRKFKAVHKVAYERKLKKITKDAG 184

Query: 550 XXSSAKIAKYNDILAKFGY 606
              S   A +  ++  +GY
Sbjct: 185 AKVSKATAPFTAVIQSYGY 203

>sp|O42848|RL16A_SCHPO 60S ribosomal protein L16-A
          Length = 197

 Score =  219 bits (558), Expect = 5e-57
 Identities = 111/203 (54%), Positives = 143/203 (70%), Gaps = 1/203 (0%)
 Frame = +1

Query: 1   MSVSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDINISGSFYRNKLKYQEFLK 180
           MS  +KV+VID  GHLLGRLA+ VAK  L GQ+VV+VR E++NISG F+RNKLKY  +L+
Sbjct: 1   MSEFQKVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLR 60

Query: 181 KRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSC 360
           K    NPSRG FH R+PS+I  + +RGM+PHKT RG AAL+ ++  EG+P P+DK K+  
Sbjct: 61  KACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVV 120

Query: 361 IPSALRVIRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSXXXXXXXXXX 540
           +P+ALRV+RLKP RK+C +GRLS EVGWKY  +VS LEE+RK K+A +Y           
Sbjct: 121 VPAALRVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSAAFYQ------AKLA 174

Query: 541 XXXXXSSAKIA-KYNDILAKFGY 606
                +SAK A   N  LA+FGY
Sbjct: 175 KQKKIASAKAASSVNGKLAEFGY 197

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,865,841
Number of Sequences: 369166
Number of extensions: 1455287
Number of successful extensions: 3739
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3720
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5072399280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01085

  1. Dr_sW_027_H03
  2. Dr_sW_020_M04
  3. Dr_sW_015_A16