Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_M04
(616 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P40429|RL13A_HUMAN 60S ribosomal protein L13a (23 kDa hi... 249 3e-66
sp|P93099|RL13A_CYAPA 60S ribosomal protein L13a 248 9e-66
sp|Q5RA38|RL13A_PONPY 60S ribosomal protein L13a 248 1e-65
sp|P19253|RL13A_MOUSE 60S ribosomal protein L13a (Transplan... 244 1e-64
sp|P35427|RL13A_RAT 60S ribosomal protein L13a 242 6e-64
sp|Q91487|RL13A_SALTR 60S ribosomal protein L13a (Transplan... 234 1e-61
sp|Q9P720|RL16_NEUCR 60S ribosomal protein L16 222 5e-58
sp|Q962U0|RL13A_SPOFR 60S ribosomal protein L13A 218 1e-56
sp|Q8MUR4|RL13A_CHOPR 60S ribosomal protein L13A 216 3e-56
sp|Q9VNE9|RL13A_DROME 60S ribosomal protein L13A 215 6e-56
>sp|P40429|RL13A_HUMAN 60S ribosomal protein L13a (23 kDa highly basic protein)
Length = 203
Score = 249 bits (637), Expect = 3e-66
Identities = 120/195 (61%), Positives = 146/195 (74%)
Frame = +1
Query: 1 VLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDINISGSFYRNKLKYQEFLKKRMNTN 180
VLV+D GHLLGRLA VAK L G++VV+VR E INISG+FYRNKLKY FL+KRMNTN
Sbjct: 6 VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTN 65
Query: 181 PSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALR 360
PSRGP+H R+PS+I WRT+RGM+PHKTKRG AALD++KVF+G+P PYDK K+ +P+AL+
Sbjct: 66 PSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALK 125
Query: 361 VIRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSXXXXXXXXXXXXXXXS 540
V+RLKP RKF LGRL+HEVGWKYQ+V +TLEEKRK KA + Y
Sbjct: 126 VVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNV 185
Query: 541 SAKIAKYNDILAKFG 585
KI KY ++L G
Sbjct: 186 EKKIDKYTEVLKTHG 200
>sp|P93099|RL13A_CYAPA 60S ribosomal protein L13a
Length = 200
Score = 248 bits (633), Expect = 9e-66
Identities = 120/196 (61%), Positives = 146/196 (74%)
Frame = +1
Query: 1 VLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDINISGSFYRNKLKYQEFLKKRMNTN 180
V+V+DC GHLLGRLA +AK L GQRVV VRTE+INISGS +RNKLK+ FLKKRMNTN
Sbjct: 5 VVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNTN 64
Query: 181 PSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALR 360
P RGPFH RSP++I+WRTIRGMIPHKT RGAAAL+++K FEGVP PYDKMK+ IP ALR
Sbjct: 65 PRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQALR 124
Query: 361 VIRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSXXXXXXXXXXXXXXXS 540
V+RLKP RKFC LGRL+ EVGW++ +V+ LEEKRK K+A +Y+
Sbjct: 125 VLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEEKRKTKSAAFYARKKTLVNLRAKAAVAV 184
Query: 541 SAKIAKYNDILAKFGY 588
++K A L +G+
Sbjct: 185 ASKTANIQKELDHYGF 200
>sp|Q5RA38|RL13A_PONPY 60S ribosomal protein L13a
Length = 203
Score = 248 bits (632), Expect = 1e-65
Identities = 119/195 (61%), Positives = 146/195 (74%)
Frame = +1
Query: 1 VLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDINISGSFYRNKLKYQEFLKKRMNTN 180
VLV+D GHLLGRLA VAK L G++VV+VR E INISG+FYRNKLKY FL+KRMNT+
Sbjct: 6 VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTS 65
Query: 181 PSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALR 360
PSRGP+H R+PS+I WRT+RGM+PHKTKRG AALD++KVF+G+P PYDK K+ +P+AL+
Sbjct: 66 PSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALK 125
Query: 361 VIRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSXXXXXXXXXXXXXXXS 540
V+RLKP RKF LGRL+HEVGWKYQ+V +TLEEKRK KA + Y
Sbjct: 126 VVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLVRLRKQAEKNV 185
Query: 541 SAKIAKYNDILAKFG 585
KI KY ++L G
Sbjct: 186 EKKIDKYTEVLKTHG 200
>sp|P19253|RL13A_MOUSE 60S ribosomal protein L13a (Transplantation antigen P198) (Tum-P198
antigen)
Length = 203
Score = 244 bits (623), Expect = 1e-64
Identities = 117/195 (60%), Positives = 145/195 (74%)
Frame = +1
Query: 1 VLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDINISGSFYRNKLKYQEFLKKRMNTN 180
VLV+D GHLLGRLA VAK L G++VV+VR E INISG+FYRNKLKY FL+KRMNTN
Sbjct: 6 VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTN 65
Query: 181 PSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALR 360
PSRGP+H R+PS+I WRT+RGM+PHKTKRG AAL+++KV +G+P PYDK K+ +P+AL+
Sbjct: 66 PSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALK 125
Query: 361 VIRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSXXXXXXXXXXXXXXXS 540
V+RLKP RKF LGRL+HEVGWKYQ+V +TLEEKRK KA + Y
Sbjct: 126 VVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKMHYRKKKQILRLRKQAEKNV 185
Query: 541 SAKIAKYNDILAKFG 585
KI K+ ++L G
Sbjct: 186 EKKICKFTEVLKTNG 200
>sp|P35427|RL13A_RAT 60S ribosomal protein L13a
Length = 203
Score = 242 bits (617), Expect = 6e-64
Identities = 116/195 (59%), Positives = 144/195 (73%)
Frame = +1
Query: 1 VLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDINISGSFYRNKLKYQEFLKKRMNTN 180
VLV+D HLLGRLA VAK L G++VV+VR E INISG+FYRNKLKY FL+KRMNTN
Sbjct: 6 VLVLDGRSHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTN 65
Query: 181 PSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALR 360
PSRGP+H R+PS+I WRT+RGM+PHKTKRG AAL+++KV +G+P PYDK K+ +P+AL+
Sbjct: 66 PSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALK 125
Query: 361 VIRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSXXXXXXXXXXXXXXXS 540
V+RLKP RKF LGRL+HEVGWKYQ+V +TLEEKRK KA + Y
Sbjct: 126 VVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLLRLRKQAEKNV 185
Query: 541 SAKIAKYNDILAKFG 585
KI K+ ++L G
Sbjct: 186 EKKICKFTEVLKTNG 200
>sp|Q91487|RL13A_SALTR 60S ribosomal protein L13a (Transplantation antigen P198 homolog)
Length = 189
Score = 234 bits (597), Expect = 1e-61
Identities = 110/186 (59%), Positives = 140/186 (75%)
Frame = +1
Query: 28 LLGRLATAVAKASLQGQRVVLVRTEDINISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLR 207
LLGRLA VA L G +VV+VR E INISG+FYRNKLKY FL+KRMNTNPSRGP+H R
Sbjct: 1 LLGRLAAIVANEVLLGHKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFR 60
Query: 208 SPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVIRLKPNRK 387
+PS+I WRT+RGM+PHKTKRG AAL+++KVF+GVP PYDK K+ +P+AL+++RLKP RK
Sbjct: 61 APSRIFWRTVRGMLPHKTKRGQAALERLKVFDGVPPPYDKRKRMVVPAALKIVRLKPTRK 120
Query: 388 FCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSXXXXXXXXXXXXXXXSSAKIAKYND 567
F LGRL+HEVGWKYQ++ +TLEEKRK KA + Y+ + I+KY
Sbjct: 121 FALLGRLAHEVGWKYQAITATLEEKRKEKAKIRYAKKKTVTKLSKLAEKNVESTISKYTA 180
Query: 568 ILAKFG 585
+L ++G
Sbjct: 181 VLKQYG 186
>sp|Q9P720|RL16_NEUCR 60S ribosomal protein L16
Length = 202
Score = 222 bits (566), Expect = 5e-58
Identities = 115/201 (57%), Positives = 142/201 (70%), Gaps = 5/201 (2%)
Frame = +1
Query: 1 VLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDINISGSFYRNKLKYQEFLKKRMNTN 180
V+VID GHLLGRLA+ VAK L GQ++V+VR E +NISG F+R KLKY +L+K N
Sbjct: 7 VVVIDGKGHLLGRLASIVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHSYLRKMTRYN 66
Query: 181 PSRG-PFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSAL 357
P+RG PFH R+PS+I ++ +RGMIPHKT RGAAAL+++KVFEGVP PYDK KK +P AL
Sbjct: 67 PTRGGPFHFRAPSRIFYKAVRGMIPHKTARGAAALERLKVFEGVPPPYDKKKKMVVPQAL 126
Query: 358 RVIRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSXXXXXXXXXXXXXXX 537
RV+RL+P RKFC +GRLS EVGWKY+ VVS LEE+RKAK A +Y
Sbjct: 127 RVLRLQPGRKFCTVGRLSSEVGWKYEDVVSRLEERRKAKGAAYYE-----RKKVAARQLS 181
Query: 538 SSAKIAKYND----ILAKFGY 588
+ K AK ND L +FGY
Sbjct: 182 EAKKSAKVNDKTAEALKEFGY 202
>sp|Q962U0|RL13A_SPOFR 60S ribosomal protein L13A
Length = 204
Score = 218 bits (554), Expect = 1e-56
Identities = 100/195 (51%), Positives = 135/195 (69%)
Frame = +1
Query: 4 LVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDINISGSFYRNKLKYQEFLKKRMNTNP 183
+VID GHLLGRLA +AK L+G +VV+VR E INISG+F+RNKLK+ FL+KR N NP
Sbjct: 9 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNVNP 68
Query: 184 SRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRV 363
+RGPFH R+PSKI+W+T+RGMIPHKT+RG +AL +++ ++G P PYD ++ +P+ALRV
Sbjct: 69 ARGPFHFRAPSKILWKTVRGMIPHKTERGKSALRRLRAYDGCPPPYDNRRRVVVPAALRV 128
Query: 364 IRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSXXXXXXXXXXXXXXXSS 543
LKP RK+C +GRLSHEVGWKY+ VV LE KRK K+ + +
Sbjct: 129 FCLKPGRKYCHVGRLSHEVGWKYRDVVRKLENKRKVKSVKLMAYEKKLKRITKESGEKVA 188
Query: 544 AKIAKYNDILAKFGY 588
A + ++ +GY
Sbjct: 189 KTTAPFTAVIQSYGY 203
>sp|Q8MUR4|RL13A_CHOPR 60S ribosomal protein L13A
Length = 204
Score = 216 bits (551), Expect = 3e-56
Identities = 101/195 (51%), Positives = 135/195 (69%)
Frame = +1
Query: 4 LVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDINISGSFYRNKLKYQEFLKKRMNTNP 183
+VID GHLLGRLA +AK L+G +VV+VR E +NISG+F+RNKLK+ FL+KR N NP
Sbjct: 9 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQLNISGNFFRNKLKFMSFLRKRCNVNP 68
Query: 184 SRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRV 363
+RGPFH R+PSKI+W+T+RGMIPHKT+RG AL +++ ++G P PYD ++ +P+ALRV
Sbjct: 69 ARGPFHFRAPSKILWKTVRGMIPHKTERGKDALRRLRSYDGCPPPYDNRRRVVVPAALRV 128
Query: 364 IRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSXXXXXXXXXXXXXXXSS 543
LKP RK+C +GRLSHEVGWKY+ VV LE+KRK KA + S
Sbjct: 129 FCLKPGRKYCHVGRLSHEVGWKYREVVRKLEDKRKFKAVHKVAYERKLKKITKDAGAKVS 188
Query: 544 AKIAKYNDILAKFGY 588
A + ++ +GY
Sbjct: 189 KATAPFTAVIQSYGY 203
>sp|Q9VNE9|RL13A_DROME 60S ribosomal protein L13A
Length = 205
Score = 215 bits (548), Expect = 6e-56
Identities = 99/195 (50%), Positives = 138/195 (70%)
Frame = +1
Query: 4 LVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDINISGSFYRNKLKYQEFLKKRMNTNP 183
+VID GHLLGRLA+ VAK LQG +V +VR E++N+SG FYRNK+K+ +L+KR N NP
Sbjct: 9 VVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLRKRCNVNP 68
Query: 184 SRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRV 363
+RGPFH R+PS+I ++ +RGMIPHKTKRG AAL +++VF+G+P+PYDK ++ +P A+RV
Sbjct: 69 ARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRVVVPIAMRV 128
Query: 364 IRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSXXXXXXXXXXXXXXXSS 543
+ L+ +RK+CQ+GRLSHEVGW YQ V+ +LE KRKAK + +
Sbjct: 129 LTLRSDRKYCQVGRLSHEVGWHYQDVIKSLERKRKAKLRVTLKHNRELKKLTVKARENIA 188
Query: 544 AKIAKYNDILAKFGY 588
+N I+ +GY
Sbjct: 189 KAAEPFNKIIKSYGY 203
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,412,458
Number of Sequences: 369166
Number of extensions: 1419710
Number of successful extensions: 3526
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3508
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4846822695
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)