Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_H03
(634 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P93099|RL13A_CYAPA 60S ribosomal protein L13a 252 6e-67
sp|P40429|RL13A_HUMAN 60S ribosomal protein L13a (23 kDa hi... 250 2e-66
sp|Q5RA38|RL13A_PONPY 60S ribosomal protein L13a 248 9e-66
sp|P19253|RL13A_MOUSE 60S ribosomal protein L13a (Transplan... 244 1e-64
sp|P35427|RL13A_RAT 60S ribosomal protein L13a 242 5e-64
sp|Q91487|RL13A_SALTR 60S ribosomal protein L13a (Transplan... 234 1e-61
sp|Q9P720|RL16_NEUCR 60S ribosomal protein L16 226 4e-59
sp|Q962U0|RL13A_SPOFR 60S ribosomal protein L13A 221 1e-57
sp|Q8MUR4|RL13A_CHOPR 60S ribosomal protein L13A 220 3e-57
sp|O42848|RL16A_SCHPO 60S ribosomal protein L16-A 219 5e-57
>sp|P93099|RL13A_CYAPA 60S ribosomal protein L13a
Length = 200
Score = 252 bits (643), Expect = 6e-67
Identities = 122/198 (61%), Positives = 148/198 (74%)
Frame = +1
Query: 13 EKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDINISGSFYRNKLKYQEFLKKRMN 192
EKV+V+DC GHLLGRLA +AK L GQRVV VRTE+INISGS +RNKLK+ FLKKRMN
Sbjct: 3 EKVVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMN 62
Query: 193 TNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSA 372
TNP RGPFH RSP++I+WRTIRGMIPHKT RGAAAL+++K FEGVP PYDKMK+ IP A
Sbjct: 63 TNPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQA 122
Query: 373 LRVIRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSXXXXXXXXXXXXXX 552
LRV+RLKP RKFC LGRL+ EVGW++ +V+ LEEKRK K+A +Y+
Sbjct: 123 LRVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEEKRKTKSAAFYARKKTLVNLRAKAAV 182
Query: 553 XSSAKIAKYNDILAKFGY 606
++K A L +G+
Sbjct: 183 AVASKTANIQKELDHYGF 200
>sp|P40429|RL13A_HUMAN 60S ribosomal protein L13a (23 kDa highly basic protein)
Length = 203
Score = 250 bits (638), Expect = 2e-66
Identities = 120/196 (61%), Positives = 147/196 (75%)
Frame = +1
Query: 16 KVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDINISGSFYRNKLKYQEFLKKRMNT 195
+VLV+D GHLLGRLA VAK L G++VV+VR E INISG+FYRNKLKY FL+KRMNT
Sbjct: 5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNT 64
Query: 196 NPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSAL 375
NPSRGP+H R+PS+I WRT+RGM+PHKTKRG AALD++KVF+G+P PYDK K+ +P+AL
Sbjct: 65 NPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAAL 124
Query: 376 RVIRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSXXXXXXXXXXXXXXX 555
+V+RLKP RKF LGRL+HEVGWKYQ+V +TLEEKRK KA + Y
Sbjct: 125 KVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKN 184
Query: 556 SSAKIAKYNDILAKFG 603
KI KY ++L G
Sbjct: 185 VEKKIDKYTEVLKTHG 200
>sp|Q5RA38|RL13A_PONPY 60S ribosomal protein L13a
Length = 203
Score = 248 bits (633), Expect = 9e-66
Identities = 119/196 (60%), Positives = 147/196 (75%)
Frame = +1
Query: 16 KVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDINISGSFYRNKLKYQEFLKKRMNT 195
+VLV+D GHLLGRLA VAK L G++VV+VR E INISG+FYRNKLKY FL+KRMNT
Sbjct: 5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNT 64
Query: 196 NPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSAL 375
+PSRGP+H R+PS+I WRT+RGM+PHKTKRG AALD++KVF+G+P PYDK K+ +P+AL
Sbjct: 65 SPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAAL 124
Query: 376 RVIRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSXXXXXXXXXXXXXXX 555
+V+RLKP RKF LGRL+HEVGWKYQ+V +TLEEKRK KA + Y
Sbjct: 125 KVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLVRLRKQAEKN 184
Query: 556 SSAKIAKYNDILAKFG 603
KI KY ++L G
Sbjct: 185 VEKKIDKYTEVLKTHG 200
>sp|P19253|RL13A_MOUSE 60S ribosomal protein L13a (Transplantation antigen P198) (Tum-P198
antigen)
Length = 203
Score = 244 bits (624), Expect = 1e-64
Identities = 117/196 (59%), Positives = 146/196 (74%)
Frame = +1
Query: 16 KVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDINISGSFYRNKLKYQEFLKKRMNT 195
+VLV+D GHLLGRLA VAK L G++VV+VR E INISG+FYRNKLKY FL+KRMNT
Sbjct: 5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNT 64
Query: 196 NPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSAL 375
NPSRGP+H R+PS+I WRT+RGM+PHKTKRG AAL+++KV +G+P PYDK K+ +P+AL
Sbjct: 65 NPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAAL 124
Query: 376 RVIRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSXXXXXXXXXXXXXXX 555
+V+RLKP RKF LGRL+HEVGWKYQ+V +TLEEKRK KA + Y
Sbjct: 125 KVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKMHYRKKKQILRLRKQAEKN 184
Query: 556 SSAKIAKYNDILAKFG 603
KI K+ ++L G
Sbjct: 185 VEKKICKFTEVLKTNG 200
>sp|P35427|RL13A_RAT 60S ribosomal protein L13a
Length = 203
Score = 242 bits (618), Expect = 5e-64
Identities = 116/196 (59%), Positives = 145/196 (73%)
Frame = +1
Query: 16 KVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDINISGSFYRNKLKYQEFLKKRMNT 195
+VLV+D HLLGRLA VAK L G++VV+VR E INISG+FYRNKLKY FL+KRMNT
Sbjct: 5 QVLVLDGRSHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNT 64
Query: 196 NPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSAL 375
NPSRGP+H R+PS+I WRT+RGM+PHKTKRG AAL+++KV +G+P PYDK K+ +P+AL
Sbjct: 65 NPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAAL 124
Query: 376 RVIRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSXXXXXXXXXXXXXXX 555
+V+RLKP RKF LGRL+HEVGWKYQ+V +TLEEKRK KA + Y
Sbjct: 125 KVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLLRLRKQAEKN 184
Query: 556 SSAKIAKYNDILAKFG 603
KI K+ ++L G
Sbjct: 185 VEKKICKFTEVLKTNG 200
>sp|Q91487|RL13A_SALTR 60S ribosomal protein L13a (Transplantation antigen P198 homolog)
Length = 189
Score = 234 bits (597), Expect = 1e-61
Identities = 110/186 (59%), Positives = 140/186 (75%)
Frame = +1
Query: 46 LLGRLATAVAKASLQGQRVVLVRTEDINISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLR 225
LLGRLA VA L G +VV+VR E INISG+FYRNKLKY FL+KRMNTNPSRGP+H R
Sbjct: 1 LLGRLAAIVANEVLLGHKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFR 60
Query: 226 SPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVIRLKPNRK 405
+PS+I WRT+RGM+PHKTKRG AAL+++KVF+GVP PYDK K+ +P+AL+++RLKP RK
Sbjct: 61 APSRIFWRTVRGMLPHKTKRGQAALERLKVFDGVPPPYDKRKRMVVPAALKIVRLKPTRK 120
Query: 406 FCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSXXXXXXXXXXXXXXXSSAKIAKYND 585
F LGRL+HEVGWKYQ++ +TLEEKRK KA + Y+ + I+KY
Sbjct: 121 FALLGRLAHEVGWKYQAITATLEEKRKEKAKIRYAKKKTVTKLSKLAEKNVESTISKYTA 180
Query: 586 ILAKFG 603
+L ++G
Sbjct: 181 VLKQYG 186
>sp|Q9P720|RL16_NEUCR 60S ribosomal protein L16
Length = 202
Score = 226 bits (576), Expect = 4e-59
Identities = 118/207 (57%), Positives = 145/207 (70%), Gaps = 5/207 (2%)
Frame = +1
Query: 1 MSVSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDINISGSFYRNKLKYQEFLK 180
MS E V+VID GHLLGRLA+ VAK L GQ++V+VR E +NISG F+R KLKY +L+
Sbjct: 1 MSSFESVVVIDGKGHLLGRLASIVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHSYLR 60
Query: 181 KRMNTNPSRG-PFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKS 357
K NP+RG PFH R+PS+I ++ +RGMIPHKT RGAAAL+++KVFEGVP PYDK KK
Sbjct: 61 KMTRYNPTRGGPFHFRAPSRIFYKAVRGMIPHKTARGAAALERLKVFEGVPPPYDKKKKM 120
Query: 358 CIPSALRVIRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSXXXXXXXXX 537
+P ALRV+RL+P RKFC +GRLS EVGWKY+ VVS LEE+RKAK A +Y
Sbjct: 121 VVPQALRVLRLQPGRKFCTVGRLSSEVGWKYEDVVSRLEERRKAKGAAYYE-----RKKV 175
Query: 538 XXXXXXSSAKIAKYND----ILAKFGY 606
+ K AK ND L +FGY
Sbjct: 176 AARQLSEAKKSAKVNDKTAEALKEFGY 202
>sp|Q962U0|RL13A_SPOFR 60S ribosomal protein L13A
Length = 204
Score = 221 bits (563), Expect = 1e-57
Identities = 102/199 (51%), Positives = 137/199 (68%)
Frame = +1
Query: 10 SEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDINISGSFYRNKLKYQEFLKKRM 189
S K +VID GHLLGRLA +AK L+G +VV+VR E INISG+F+RNKLK+ FL+KR
Sbjct: 5 SNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRC 64
Query: 190 NTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPS 369
N NP+RGPFH R+PSKI+W+T+RGMIPHKT+RG +AL +++ ++G P PYD ++ +P+
Sbjct: 65 NVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKSALRRLRAYDGCPPPYDNRRRVVVPA 124
Query: 370 ALRVIRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSXXXXXXXXXXXXX 549
ALRV LKP RK+C +GRLSHEVGWKY+ VV LE KRK K+ +
Sbjct: 125 ALRVFCLKPGRKYCHVGRLSHEVGWKYRDVVRKLENKRKVKSVKLMAYEKKLKRITKESG 184
Query: 550 XXSSAKIAKYNDILAKFGY 606
+ A + ++ +GY
Sbjct: 185 EKVAKTTAPFTAVIQSYGY 203
>sp|Q8MUR4|RL13A_CHOPR 60S ribosomal protein L13A
Length = 204
Score = 220 bits (560), Expect = 3e-57
Identities = 103/199 (51%), Positives = 137/199 (68%)
Frame = +1
Query: 10 SEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDINISGSFYRNKLKYQEFLKKRM 189
S K +VID GHLLGRLA +AK L+G +VV+VR E +NISG+F+RNKLK+ FL+KR
Sbjct: 5 SNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQLNISGNFFRNKLKFMSFLRKRC 64
Query: 190 NTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPS 369
N NP+RGPFH R+PSKI+W+T+RGMIPHKT+RG AL +++ ++G P PYD ++ +P+
Sbjct: 65 NVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKDALRRLRSYDGCPPPYDNRRRVVVPA 124
Query: 370 ALRVIRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSXXXXXXXXXXXXX 549
ALRV LKP RK+C +GRLSHEVGWKY+ VV LE+KRK KA +
Sbjct: 125 ALRVFCLKPGRKYCHVGRLSHEVGWKYREVVRKLEDKRKFKAVHKVAYERKLKKITKDAG 184
Query: 550 XXSSAKIAKYNDILAKFGY 606
S A + ++ +GY
Sbjct: 185 AKVSKATAPFTAVIQSYGY 203
>sp|O42848|RL16A_SCHPO 60S ribosomal protein L16-A
Length = 197
Score = 219 bits (558), Expect = 5e-57
Identities = 111/203 (54%), Positives = 143/203 (70%), Gaps = 1/203 (0%)
Frame = +1
Query: 1 MSVSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDINISGSFYRNKLKYQEFLK 180
MS +KV+VID GHLLGRLA+ VAK L GQ+VV+VR E++NISG F+RNKLKY +L+
Sbjct: 1 MSEFQKVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLR 60
Query: 181 KRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSC 360
K NPSRG FH R+PS+I + +RGM+PHKT RG AAL+ ++ EG+P P+DK K+
Sbjct: 61 KACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVV 120
Query: 361 IPSALRVIRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSXXXXXXXXXX 540
+P+ALRV+RLKP RK+C +GRLS EVGWKY +VS LEE+RK K+A +Y
Sbjct: 121 VPAALRVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSAAFYQ------AKLA 174
Query: 541 XXXXXSSAKIA-KYNDILAKFGY 606
+SAK A N LA+FGY
Sbjct: 175 KQKKIASAKAASSVNGKLAEFGY 197
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,865,841
Number of Sequences: 369166
Number of extensions: 1455287
Number of successful extensions: 3739
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3720
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5072399280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)