Planaria EST Database

DrC_01084

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01084
         (1165 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P54675|PI3K3_DICDI  Phosphatidylinositol 3-kinase 3 (PI3-...    41   0.008
sp|P70039|APC_XENLA  Adenomatous polyposis coli homolog (APC...    33   1.2  
sp|P20134|SFL1_YEAST  Flocculation suppression protein (SFL1...    33   1.6  
sp|Q03213|YM41_YEAST  Hypothetical 79.4 kDa protein in ALD2-...    32   4.6  
sp|P53185|MTC2_YEAST  Protein MTC2                                 32   4.6  
sp|O94166|CREA_ASPAC  DNA-binding protein creA (Carbon catab...    31   6.0  
sp|P39104|PIK1_YEAST  Phosphatidylinositol 4-kinase PIK1 (PI...    31   7.8  
sp|Q88VK7|IF2_LACPL  Translation initiation factor IF-2            31   7.8  

>sp|P54675|PI3K3_DICDI Phosphatidylinositol 3-kinase 3 (PI3-kinase) (PtdIns-3-kinase)
           (PI3K)
          Length = 1585

 Score = 40.8 bits (94), Expect = 0.008
 Identities = 59/300 (19%), Positives = 114/300 (38%), Gaps = 2/300 (0%)
 Frame = +2

Query: 8   EQSEHFKSELNKYEECKSSLSSRSNYYXXXXXXXXXXRLTTSQNRNTSCMSTSNSLGTIS 187
           E +E FK   N  +  K +  + SN Y              + N N +  + +N+    +
Sbjct: 21  ESTEQFKQWSNLIKNIKENSLNNSNIYLTIPTTQNLINNNNNNNNNNNNNNNNNN----N 76

Query: 188 CSNSNFSNLTFASTAMSNLDXXXXXXXXXXXXXXTVQSTGKSNNLTRNLSHDETFSKAPP 367
            +N+N +N+   S +  N +                 +   +NN   NLS D + +K   
Sbjct: 77  NNNNNNNNVIIPSASTENKEEN--------------DNNNSNNNNNINLSPDSSITKDIN 122

Query: 368 INKNRVGSPNNTLEKSPGNKTQFISIS-NTGGIRQDSKPDMNKLNKYSFGTGNHYXXXXX 544
           I +N++     T  K     T  +  S + G I    KP+  + N+    T N+      
Sbjct: 123 ITENKITEIKTTETKETSTGTSPLEKSPSKGFIISPKKPE--EENEIEGETINNIAITNY 180

Query: 545 XXXXXXXXSSYANKTNQQGRMSNMNASVGCPKNISPNSYETHKNSARINGDAEAGKPHRV 724
                          N +   +N N +     N + N+  ++ N+  I+    +  P  +
Sbjct: 181 TQGPSMLTLMKKKLENIKKNNNNNNNNGNGNNNSNNNNSNSNNNNNGIS--PSSSPPSHL 238

Query: 725 EVRVPDNARHMSNSGNTTDSQDVEYGTPDSPVSPCSLRF-PQTDEIRNGTTSRQTSNKKG 901
                +N  + +NS NTT++     G   +  +  SL    + ++ ++ T+S+ TS+  G
Sbjct: 239 NGNNNNNNSNNTNSNNTTNATTNSVGFSITMTNSNSLSVSKRMNKFKSWTSSKPTSSSIG 298

>sp|P70039|APC_XENLA Adenomatous polyposis coli homolog (APC protein)
          Length = 2829

 Score = 33.5 bits (75), Expect = 1.2
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = +2

Query: 710  KPHRVEVRVPDNARHMS---NSGNTTDSQDVEYGTPDSPVSPCSLRFPQTDEIRNGTTSR 880
            KP+RV+ ++ D   H S   +SGN+   Q+ +   P SPV P        + ++  T  +
Sbjct: 1739 KPYRVK-KIMDQINHTSAATSSGNSRSMQETDKNKPTSPVKPMPQSIGFKERLKKNTELK 1797

Query: 881  QTSNKKGQ 904
               N + Q
Sbjct: 1798 LNPNSENQ 1805

>sp|P20134|SFL1_YEAST Flocculation suppression protein (SFL1 protein)
          Length = 766

 Score = 33.1 bits (74), Expect = 1.6
 Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 2/124 (1%)
 Frame = +2

Query: 332 LSHDETFSKAPPINKNRVGSPNNTLEKSPGNKTQFISISNTGGIRQDSKPDMNKLNKYSF 511
           +SHD + + A   +       +NT + + GNK      +  GG+++  K +  K+ ++  
Sbjct: 127 VSHDHSSNDANSGDDANTNDDSNTHDDNSGNKNSSGDENTGGGVQEKEKSNPTKIWEFKH 186

Query: 512 GTGNHYXXXXXXXXXXXXXSSYANKT--NQQGRMSNMNASVGCPKNISPNSYETHKNSAR 685
            +G                +S  N +  N +   SN N  +     + P+S +    S+ 
Sbjct: 187 SSGIFKKGDIEGLKHIKRRASSRNNSSINSRKNSSNQNYDIDSGARVRPSSIQDPSTSSN 246

Query: 686 INGD 697
             G+
Sbjct: 247 SFGN 250

>sp|Q03213|YM41_YEAST Hypothetical 79.4 kDa protein in ALD2-DDR48 intergenic region
          Length = 719

 Score = 31.6 bits (70), Expect = 4.6
 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
 Frame = +2

Query: 587 TNQQGRMSNM---NASVGCPKNISPNSYETHKNSARINGDAEAGKPHRVEVRVPDNA-RH 754
           T+QQ   S +   NAS   P  ++PN  +  + + + N +A     H    + P +A   
Sbjct: 353 THQQVNRSPISFPNASTDKPFKLNPNGIKRRRRNTQSNNNAST-NDHASAAQKPISALSP 411

Query: 755 MSNSGNTTDSQDVEYGTPDSPVSPCSLRFPQTDEIRN-GTTS 877
           ++NS N+T S +    +  S V+  S  F   + + N GTT+
Sbjct: 412 LTNSHNSTTSMNYTNSSIHSGVTSASNSFHDLNSLNNFGTTT 453

>sp|P53185|MTC2_YEAST Protein MTC2
          Length = 909

 Score = 31.6 bits (70), Expect = 4.6
 Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 4/115 (3%)
 Frame = +2

Query: 122  LTTSQNRNTSCMSTSNSLGTISCSNSNFSNLTFASTAMSNLDXXXXXXXXXXXXXXTVQS 301
            ++T  N  TS  ++ N   + S +  N  N T     +S  D              T  +
Sbjct: 699  ISTPPNTITSASTSDNCTSSQSAAQKNIENFT----TLSKYDVYSSTSFIPSTSKNTNTN 754

Query: 302  TGKSNNLTRNL----SHDETFSKAPPINKNRVGSPNNTLEKSPGNKTQFISISNT 454
              K     +N     S+   F+K+  I++   GS NN+  + PG+  +  S+ N+
Sbjct: 755  VSKQQQQPQNSTPCSSNRFLFNKSSLISQESNGSNNNSGTQGPGSMNESYSLDNS 809

>sp|O94166|CREA_ASPAC DNA-binding protein creA (Carbon catabolite repressor)
          Length = 431

 Score = 31.2 bits (69), Expect = 6.0
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = +2

Query: 311 SNNLTRNLSHDETFSKAPPINKNRVGSPNNTLEKSP 418
           ++N++R+ SH+E  S +  + ++R  SPN+T   SP
Sbjct: 269 THNMSRSHSHEEDDSYSHRVKRSRPNSPNSTAPSSP 304

>sp|P39104|PIK1_YEAST Phosphatidylinositol 4-kinase PIK1 (PI4-kinase) (PtdIns-4-kinase)
          Length = 1066

 Score = 30.8 bits (68), Expect = 7.8
 Identities = 33/113 (29%), Positives = 46/113 (40%), Gaps = 6/113 (5%)
 Frame = +2

Query: 371 NKNRVGSPNNTLEKSPGNKTQFISISNTGGIRQDSKPDMNKLNKYSFGTGNHYXXXXXXX 550
           N NR GS +NT +   GNK  +IS       R D   + N++      TG          
Sbjct: 306 NINRDGSISNTAKALDGNKGDYISPKG----RND---ENNEIGNNEDETGGETEEDADAL 358

Query: 551 XXXXXXSSYANKTNQQGRMSNMNAS--VGCPK----NISPNSYETHKNSARIN 691
                 SS  +  N Q R S+ +++   G PK    N  P S +  KNS + N
Sbjct: 359 NSDHFTSSMPDLHNIQPRTSSASSASLEGTPKLNRTNSQPLSRQAFKNSKKAN 411

>sp|Q88VK7|IF2_LACPL Translation initiation factor IF-2
          Length = 858

 Score = 30.8 bits (68), Expect = 7.8
 Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
 Frame = +2

Query: 125 TTSQNRNTSC-MSTSNSLGTISCSNSNFSNLTFASTAMSNLDXXXXXXXXXXXXXXTVQS 301
           T S N N S   S SNS      SN+N SN    +   +N +                 S
Sbjct: 123 TNSNNGNRSANASRSNSARNNGGSNTNRSNNNNNNNRSNNNNRSNTSNNR-------TNS 175

Query: 302 TG-KSNNLTRNLSHDETFSKAPPINKNRVGSPNNTLEKSPGNKTQFISISNTGGIR 466
           TG ++NN  +N +++ T +     N NR    NN+     G     ++ +N GG R
Sbjct: 176 TGNRTNNGGQNRNNNRTTTNNNNNNSNRSNGSNNSSRNGSGRFGGSLNSNNNGGGR 231

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,910,784
Number of Sequences: 369166
Number of extensions: 2434757
Number of successful extensions: 6231
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6214
length of database: 68,354,980
effective HSP length: 112
effective length of database: 47,664,660
effective search space used: 13107781500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01084

  1. Dr_sW_027_G05
  2. Dr_sW_015_C19