Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_C19
(571 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P70039|APC_XENLA Adenomatous polyposis coli homolog (APC... 33 0.38
sp|Q03213|YM41_YEAST Hypothetical 79.4 kDa protein in ALD2-... 31 1.9
sp|O95071|EDD1_HUMAN Ubiquitin--protein ligase EDD1 (Hyperp... 29 7.2
sp|O88382|AIP1_RAT Atrophin-1-interacting protein 1 (Membra... 29 7.2
sp|Q86UL8|AIP1_HUMAN Atrophin-1-interacting protein 1 (Atro... 29 7.2
sp|Q9P4Z1|TOM1_NEUCR E3 ubiquitin protein ligase TOM1-like ... 29 9.4
>sp|P70039|APC_XENLA Adenomatous polyposis coli homolog (APC protein)
Length = 2829
Score = 33.5 bits (75), Expect = 0.38
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +2
Query: 116 KPHRVEVRVPDNARHMS---NSGNTTDSQDVEYGTPDSPVSPCSLRFPQTDEIRNGTTSR 286
KP+RV+ ++ D H S +SGN+ Q+ + P SPV P + ++ T +
Sbjct: 1739 KPYRVK-KIMDQINHTSAATSSGNSRSMQETDKNKPTSPVKPMPQSIGFKERLKKNTELK 1797
Query: 287 QTSNKKGQ 310
N + Q
Sbjct: 1798 LNPNSENQ 1805
>sp|Q03213|YM41_YEAST Hypothetical 79.4 kDa protein in ALD2-DDR48 intergenic region
Length = 719
Score = 31.2 bits (69), Expect = 1.9
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Frame = +2
Query: 23 NASVGCPKNISPNSYETHKNSARINGDAEAGKPHRVEVRVPDNA-RHMSNSGNTTDSQDV 199
NAS P ++PN + + + + N +A H + P +A ++NS N+T S +
Sbjct: 366 NASTDKPFKLNPNGIKRRRRNTQSNNNAST-NDHASAAQKPISALSPLTNSHNSTTSMNY 424
Query: 200 EYGTPDSPVSPCSLRFPQTDEIRN-GTTS 283
+ S V+ S F + + N GTT+
Sbjct: 425 TNSSIHSGVTSASNSFHDLNSLNNFGTTT 453
>sp|O95071|EDD1_HUMAN Ubiquitin--protein ligase EDD1 (Hyperplastic discs protein homolog)
(hHYD) (Progestin-induced protein)
Length = 2799
Score = 29.3 bits (64), Expect = 7.2
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Frame = +2
Query: 125 RVEVRVPDNARHMSNSGNTTDSQD--------VEYGTPDSPVSPCS 238
R ++R P++ ++M + TT+++ E G P SP S CS
Sbjct: 573 RFQLRSPESLKNMEKASKTTEAKPESKQEPVKTEMGPPPSPASTCS 618
>sp|O88382|AIP1_RAT Atrophin-1-interacting protein 1 (Membrane-associated guanylate
kinase inverted-2) (MAGI-2) (Synaptic scaffolding
molecule) (S-SCAM)
Length = 1277
Score = 29.3 bits (64), Expect = 7.2
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 191 QDVEYGTPDSPVSPCSLRFPQTDEIRNGTTSRQTSNKK 304
+D YGTP P P L TD+I G T +K
Sbjct: 179 EDNYYGTPKPPAEPAPLLLNVTDQILPGATPSAEGKRK 216
>sp|Q86UL8|AIP1_HUMAN Atrophin-1-interacting protein 1 (Atrophin-1-interacting protein A)
(Membrane-associated guanylate kinase inverted-2)
(MAGI-2)
Length = 1455
Score = 29.3 bits (64), Expect = 7.2
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 191 QDVEYGTPDSPVSPCSLRFPQTDEIRNGTTSRQTSNKK 304
+D YGTP P P L TD+I G T +K
Sbjct: 179 EDNYYGTPKPPAEPAPLLLNVTDQILPGATPSAEGKRK 216
>sp|Q9P4Z1|TOM1_NEUCR E3 ubiquitin protein ligase TOM1-like protein
Length = 4065
Score = 28.9 bits (63), Expect = 9.4
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 143 PDNARHMSNSGNTTDSQDVEYGTPDSPVSPCSLRFPQTDEI-RNGTTSRQTSNKKG 307
PD ++ ++ D+Q VE T SP +P LR T + ++ T R S+++G
Sbjct: 289 PDTTNGEPSARDSKDAQPVEPRTTSSPAAPTPLRRSSTMNVSQSSRTQRVGSSEEG 344
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,993,983
Number of Sequences: 369166
Number of extensions: 1100852
Number of successful extensions: 2811
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2811
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4177115900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)