Planaria EST Database

DrC_01080

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01080
         (726 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6BJ51|RAD52_DEBHA  DNA repair and recombination protein ...    34   0.35 
sp|P57278|Y181_BUCAI  Hypothetical protein BU181 (yba2)            33   0.60 
sp|P33757|YB9A_YEAST  Hypothetical 59.9 kDa protein in ARO4-...    33   0.78 
sp|Q9ZJX2|SECG_HELPJ  Protein-export membrane protein secG         32   1.7  
sp|P22844|H5A_XENLA  Histone H5A (XLH5A) (H1D) (H1-SA)             31   3.0  
sp|P15771|NUCL_CHICK  Nucleolin (Protein C23)                      31   3.9  
sp|Q28475|ADAM7_MACFA  ADAM 7 precursor (A disintegrin and m...    30   5.0  
sp|P07768|SUIS_RABIT  Sucrase-isomaltase, intestinal [Contai...    30   6.6  
sp|Q8DQN5|ZMPB_STRR6  Zinc metalloprotease zmpB precursor          30   6.6  
sp|Q9L7Q2|ZMPB_STRPN  Zinc metalloprotease zmpB precursor          30   6.6  

>sp|Q6BJ51|RAD52_DEBHA DNA repair and recombination protein RAD52
          Length = 573

 Score = 34.3 bits (77), Expect = 0.35
 Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
 Frame = +1

Query: 106 PAIKKRTSILEKSLNEKYNSEITPTDNSLKR---RTTNFVPSKPVQAPSVPMKKPSVLPI 276
           PA+  R+S  E + N   + E+ PT+NS++    +   FV +K   A     K  + +P 
Sbjct: 378 PALIARSSYAENNENSNSSGEVNPTNNSVQEIPDQPALFVSAKRADALQQAPKDATKIPQ 437

Query: 277 SES---SEKCRQKVESAXXXXXXXXXXXXXSFDKLKETLDQKTNEGPPYKMELRKPSLPT 447
            ++   S   R+ ++ +               DK       +TN GPP  +    P  PT
Sbjct: 438 FDAKYVSPNIRRTLDHSKSVPVRRSEISQAPHDK------PRTNIGPPKLLNRASPG-PT 490

Query: 448 VDDTSKSN 471
           + +++ +N
Sbjct: 491 ISNSNTNN 498

>sp|P57278|Y181_BUCAI Hypothetical protein BU181 (yba2)
          Length = 238

 Score = 33.5 bits (75), Expect = 0.60
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +1

Query: 70  DEIKVKDTFDSRPAIKKRTSILEKSLNEKYNSEITPTDNSLKRRTTNFVPSKPVQAPSVP 249
           +E++ K    +R    K+ S L     +K  SEI   DN++ ++  N +PS    +P  P
Sbjct: 67  EELRKKIKILNREETNKKPSFLSNFFKKKSPSEIISNDNNILKKKENILPSNYSSSPISP 126

Query: 250 MKKPS 264
             + S
Sbjct: 127 TTQTS 131

>sp|P33757|YB9A_YEAST Hypothetical 59.9 kDa protein in ARO4-MRPS5 intergenic region
          Length = 523

 Score = 33.1 bits (74), Expect = 0.78
 Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 24/121 (19%)
 Frame = +1

Query: 25  VLKFTNADMNTDNI--TDEIKVKDTFDSRPAIKKRT--------------------SILE 138
           +LKF   +  TD I  T+EIKVK    S   +K  T                     ++E
Sbjct: 280 LLKFLKNESFTDKIILTEEIKVKRVLPSTSMLKFETFQLRSYNTASEIVVSVIGNSKLIE 339

Query: 139 KSLNEKYNSEITPTDNSLKRRTTNFVPSKPVQAPSVPMKKPSVL--PISESSEKCRQKVE 312
             +  +    IT TD+S++ +  +   ++ +  PS+ +K   +L  P  + SE   + VE
Sbjct: 340 IGMPFQMILSITKTDSSIELQEASLAVAQRMAIPSIDLKTKKILREPYIKKSEYLLRTVE 399

Query: 313 S 315
           S
Sbjct: 400 S 400

>sp|Q9ZJX2|SECG_HELPJ Protein-export membrane protein secG
          Length = 198

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +1

Query: 142 SLNEKYNSEITPTDNSLKRRTTNFVPSKPVQAPSVPMKKPSVLPISESSEK 294
           +LN   N  + PT N L++  TN  P  P Q P    K+P+  P  ES ++
Sbjct: 99  TLNPTLNPTLNPTLNPLEQAPTN--PLMPTQTPKELPKEPAKTPFVESPKQ 147

>sp|P22844|H5A_XENLA Histone H5A (XLH5A) (H1D) (H1-SA)
          Length = 196

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +1

Query: 106 PAIKKRTSILEKSLNEKYNSEITPTDNSLKRRTTNFVPSKPVQAPSVPMKKPSVLPISES 285
           PA  K+  + EK + +    +  P+    K+  T  V +KPV+A  V   KPS      S
Sbjct: 131 PAKAKKPKVAEKKVKKVAKKKPAPSPKKAKKTKT--VKAKPVRASKVKKAKPSKPKAKAS 188

Query: 286 SEKCRQK 306
            +K  +K
Sbjct: 189 PKKSGRK 195

>sp|P15771|NUCL_CHICK Nucleolin (Protein C23)
          Length = 694

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 3/97 (3%)
 Frame = +1

Query: 214 VPSKPV---QAPSVPMKKPSVLPISESSEKCRQKVESAXXXXXXXXXXXXXSFDKLKETL 384
           VP KP     A +VP KKP+V+P  + SE      E               S D+  +T 
Sbjct: 144 VPVKPAAKKSAAAVPAKKPAVVPAKQESE------EEEEEDDEEEDEEDDESEDEAMDTT 197

Query: 385 DQKTNEGPPYKMELRKPSLPTVDDTSKSNETESLESK 495
                +  P K    K    + D+  + +E E  E +
Sbjct: 198 PAPVKKPTPAKATPAKAKAESEDEEDEEDEDEDEEDE 234

>sp|Q28475|ADAM7_MACFA ADAM 7 precursor (A disintegrin and metalloproteinase domain 7)
           (Epididymal apical protein I) (EAP I)
          Length = 776

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
 Frame = -2

Query: 659 DPKKAI*HIKNYA---IIMD---HEAENQPHEL*SNQ--GLVQLLRFRYKNYNLDCTLSE 504
           DPK    H + Y    I+ D   +   + PH    N+  G+V  +   YK  N+  TL  
Sbjct: 189 DPKMKAIHNEKYIELFIVADDTVYRRNSHPHNKLRNRIWGMVNFVNMIYKTLNIHVTLVG 248

Query: 503 FEIFDSSDSVSFDLEVSSTV 444
            EI+   D +     + +T+
Sbjct: 249 IEIWTHEDKIELHSNIETTL 268

>sp|P07768|SUIS_RABIT Sucrase-isomaltase, intestinal [Contains: Sucrase ; Isomaltase ]
          Length = 1827

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = -3

Query: 556 SFFDLDXXXXXXIVHYQNLKFLIPVILFHLIWRYHQ--QLAKRVSSTPFYMGDLHWFSDQ 383
           +FF  D        HY N+++ +   L+ L ++ H   +   R     FY     W  D+
Sbjct: 673 AFFGQDSLLVKSSRHYLNIRYTLLPFLYTLFYKAHAFGETVARPVLHEFYEDTNSWVEDR 732

Query: 382 EFL 374
           EFL
Sbjct: 733 EFL 735

>sp|Q8DQN5|ZMPB_STRR6 Zinc metalloprotease zmpB precursor
          Length = 1876

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
 Frame = +1

Query: 97  DSRPAIKKRTSILEKSLNEKYNSEITPTDNSL------KRRTTNFVPSKPV--QAPSVPM 252
           ++  A K+     E+S  E+  SE+ PTD++L      K  +    P + V  +  S P 
Sbjct: 198 ETEEAPKEEAPKTEESPKEEPKSEVKPTDDTLPKVEEGKEDSAEPAPVEEVGGEVESKPE 257

Query: 253 KKPSVLPISESSEKCRQ--KVESA 318
           +K +V P S+ S+K  +  KVE A
Sbjct: 258 EKVAVKPESQPSDKPAEESKVEQA 281

>sp|Q9L7Q2|ZMPB_STRPN Zinc metalloprotease zmpB precursor
          Length = 1906

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
 Frame = +1

Query: 97  DSRPAIKKRTSILEKSLNEKYNSEITPTDNSL------KRRTTNFVPSKPV--QAPSVPM 252
           ++  A K+     E+S  E+  SE+ PTD++L      K  +    P + V  +  S P 
Sbjct: 198 ETEEAPKEEAPKTEESPKEEPKSEVKPTDDTLPKVEEGKEDSAEPAPVEEVGGEVESKPE 257

Query: 253 KKPSVLPISESSEKCRQ--KVESA 318
           +K +V P S+ S+K  +  KVE A
Sbjct: 258 EKVAVKPESQPSDKPAEESKVEQA 281

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,862,759
Number of Sequences: 369166
Number of extensions: 1399631
Number of successful extensions: 4611
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4603
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6510836890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01080

  1. Dr_sW_027_A15
  2. Dr_sW_022_C23