Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_A15
(355 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P57278|Y181_BUCAI Hypothetical protein BU181 (yba2) 30 1.3
sp|Q44689|TRPE_BUCRM Anthranilate synthase component I 30 2.2
sp|O08795|GLU2B_MOUSE Glucosidase II beta subunit precursor... 29 2.9
sp|Q97QP7|IGA1A_STRPN Immunoglobulin A1 protease precursor ... 29 3.8
sp|Q44695|TRPE_BUCAI Anthranilate synthase component I 28 5.0
sp|Q18879|CAV2_CAEEL Caveolin-2 28 5.0
sp|P33289|PEX6_PICPA Peroxisomal biogenesis factor 6 (Perox... 28 6.5
sp|P42945|UTP10_YEAST U3 small nucleolar RNA-associated pro... 28 6.5
sp|P47341|Y095_MYCGE Hypothetical lipoprotein MG095 precursor 28 6.5
sp|Q58765|YD70_METJA Hypothetical UPF0285 protein MJ1370 28 6.5
>sp|P57278|Y181_BUCAI Hypothetical protein BU181 (yba2)
Length = 238
Score = 30.4 bits (67), Expect = 1.3
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +1
Query: 70 DEIKVKDTFDSRPAIKKRTSILEKSLNEKYNSEITPTDISLKRRTTNFVPSKSVQAPSVP 249
+E++ K +R K+ S L +K SEI D ++ ++ N +PS +P P
Sbjct: 67 EELRKKIKILNREETNKKPSFLSNFFKKKSPSEIISNDNNILKKKENILPSNYSSSPISP 126
Query: 250 IKKPS 264
+ S
Sbjct: 127 TTQTS 131
>sp|Q44689|TRPE_BUCRM Anthranilate synthase component I
Length = 514
Score = 29.6 bits (65), Expect = 2.2
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +1
Query: 97 DSRPAIKKRTSILEKSLNEKYNS--EITPTDISLKRRTTNFVPSKSVQAPSVPIKKPSVL 270
+ + IK+R+ +EK LNEK S ++ TDI+L NF ++ I+K +
Sbjct: 203 NEKKRIKERSIEIEKKLNEKLKSIPKVKITDINLTSNMNNFEYGSIIKKLQKLIQKGEIF 262
Query: 271 PISES 285
+ S
Sbjct: 263 QVVPS 267
>sp|O08795|GLU2B_MOUSE Glucosidase II beta subunit precursor (Protein kinase C substrate,
60.1 kDa protein, heavy chain) (PKCSH) (80K-H protein)
Length = 521
Score = 29.3 bits (64), Expect = 2.9
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +1
Query: 142 SLNEKYNSEITPTDISLKRRTTNFVPSKSVQAPSVPIKKPSVLPISESSEKCRQRVE 312
++ +KY SE+ PTDI + T P + +KP VLP +E E+ + E
Sbjct: 275 AIRDKYRSEVPPTDIPVPEETE---PKE---------EKPPVLPPTEEEEEEEEEPE 319
>sp|Q97QP7|IGA1A_STRPN Immunoglobulin A1 protease precursor (IgA1 protease) (IgA-specific
zinc metalloproteinase)
Length = 2004
Score = 28.9 bits (63), Expect = 3.8
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Frame = +1
Query: 37 TNADMNTDNITDEIKVKDTFDSRPAIKKRTSILEKSLNEKYNSEITPTDI----SLKRRT 204
TN + T +E+KVKDTF S+ N YN + ++ S + R
Sbjct: 1068 TNGNAITGYHYNEMKVKDTFSSK-------------ANRVYNVTLVKDEVVSKESFEERG 1114
Query: 205 TNFVPSK--SVQAPSVPIKKPSVLPISESSEK 294
T S+ S +A P+ P+V P+S S +K
Sbjct: 1115 TMLDASQIASKKAEINPLILPTVEPLSTSGKK 1146
>sp|Q44695|TRPE_BUCAI Anthranilate synthase component I
Length = 521
Score = 28.5 bits (62), Expect = 5.0
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +1
Query: 97 DSRPAIKKRTSILEKSLNEKYNS---EITPTDISLKRRTTNFVPSKSVQAPSVPIKKPSV 267
D + IKKRT +EK L EK S T + L ++F S +++ I+K +
Sbjct: 203 DEKNRIKKRTEEIEKKLEEKLTSIPKNKTTVPVQLTSNISDFQYSSTIKKLQKLIQKGEI 262
Query: 268 LPISES 285
+ S
Sbjct: 263 FQVVPS 268
>sp|Q18879|CAV2_CAEEL Caveolin-2
Length = 351
Score = 28.5 bits (62), Expect = 5.0
Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Frame = +1
Query: 52 NTDNITD-----EIKVKDTFDSRPAIKKRTSILEKSLNEKYNSEITPTDISLKRRTTNFV 216
N D+I D E +VK S + +I + + + ++T +I+ ++ +T V
Sbjct: 92 NLDDIDDQEYITEFEVKSNRGSTLTTRPHVTIKQDEIEDIGERQVTVIEIASQKGSTKRV 151
Query: 217 PSKSVQAPSVPIKKPSVLPISESSEKCRQRVES 315
+ APS+P+ + + +++ R + S
Sbjct: 152 APRKDYAPSIPLPEHPAQQSAPPTQQSRPQTTS 184
>sp|P33289|PEX6_PICPA Peroxisomal biogenesis factor 6 (Peroxin-6) (Peroxisome
biosynthesis protein PAS5)
Length = 1165
Score = 28.1 bits (61), Expect = 6.5
Identities = 18/83 (21%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +1
Query: 34 FTNADMNTDNITDEIKVKDTFD---SRPAIKKRTSILEKSLNEKYNSEITPTDISLKRRT 204
F + ++DN++DE++ K F+ P+ ++RT I + ++ ++ + TP ++ R
Sbjct: 667 FVASTNDSDNLSDELRAKFKFEIVLGVPSEQERTLIFKYLID--FDQKTTP-KVTEGTRE 723
Query: 205 TNFVPSKSVQAPSVPIKKPSVLP 273
+F P + S+ ++ + P
Sbjct: 724 LSFAPRNDLSLSSLSLQSAGLTP 746
>sp|P42945|UTP10_YEAST U3 small nucleolar RNA-associated protein 10 (U3 snoRNA-associated
protein 10)
Length = 1769
Score = 28.1 bits (61), Expect = 6.5
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = +1
Query: 34 FTNADMNTDNITDEIKVKDTFDSRPAIKKRTSILEKSLNEKYNSEITPTDISLKRRT 204
FTNAD+NTD VK D KK T+ + L +K++ I T++S+ T
Sbjct: 438 FTNADVNTD------IVKQLSDPVETTKKDTASFQTFL-DKHSELINTTNVSMLTET 487
>sp|P47341|Y095_MYCGE Hypothetical lipoprotein MG095 precursor
Length = 398
Score = 28.1 bits (61), Expect = 6.5
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 70 DEIKVKD-TFDSRPAIKKRTSILEKSLNEKYNSEITPTDISLKRRTTNFVPSKSVQA 237
+EIK +D DS P TS+L++ K+N+E+T T K + N + + ++A
Sbjct: 243 NEIKFEDYVTDSSPT----TSLLKQVWKSKWNTELTHTSFKFKLNSFNVLLTYQLEA 295
>sp|Q58765|YD70_METJA Hypothetical UPF0285 protein MJ1370
Length = 328
Score = 28.1 bits (61), Expect = 6.5
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = +1
Query: 46 DMNTDNITDEIKVKDTFDSRPAIK-KRTSILEKSLNEKYNSEITPTDISLKRRTTNFVPS 222
D T IT IK D + K KRT + EKS E+ I+ DI L T +
Sbjct: 7 DHGTSGITTCIKDND---KKIIFKLKRTELKEKSYLEELEKHISLEDIDLIALTYSMGDG 63
Query: 223 KSVQAPSVPIKKPSVLPISESSEK 294
+ P +K VL I + EK
Sbjct: 64 INKILPIEKVKNRGVLSIEGAGEK 87
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.308 0.124 0.327
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,214,888
Number of Sequences: 369166
Number of extensions: 522985
Number of successful extensions: 1519
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1514
length of database: 68,354,980
effective HSP length: 85
effective length of database: 52,652,505
effective search space used: 1684880160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)