Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_C23
(658 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6BJ51|RAD52_DEBHA DNA repair and recombination protein ... 34 0.38
sp|Q9ZJX2|SECG_HELPJ Protein-export membrane protein secG 33 0.65
sp|P22844|H5A_XENLA Histone H5A (XLH5A) (H1D) (H1-SA) 33 0.85
sp|P53858|BNI4_YEAST Protein BNI4 32 1.9
sp|P57278|Y181_BUCAI Hypothetical protein BU181 (yba2) 31 3.2
sp|Q28475|ADAM7_MACFA ADAM 7 precursor (A disintegrin and m... 30 4.2
sp|P04866|COAT_BSMV Coat protein (Capsid protein) (Beta-A p... 30 4.2
sp|Q62383|SPT6H_MOUSE Transcription elongation factor SPT6 30 5.5
sp|P07768|SUIS_RABIT Sucrase-isomaltase, intestinal [Contai... 30 5.5
sp|O08795|GLU2B_MOUSE Glucosidase II beta subunit precursor... 30 5.5
>sp|Q6BJ51|RAD52_DEBHA DNA repair and recombination protein RAD52
Length = 573
Score = 33.9 bits (76), Expect = 0.38
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 6/128 (4%)
Frame = +2
Query: 38 PAIKKRTSILEKSLNEKYNSEITPTDNSLKR---STTNFVPSKPVQAPSVRVKKPSVLPI 208
PA+ R+S E + N + E+ PT+NS++ FV +K A K + +P
Sbjct: 378 PALIARSSYAENNENSNSSGEVNPTNNSVQEIPDQPALFVSAKRADALQQAPKDATKIPQ 437
Query: 209 SES---SEKCRQKVESAXXXXXXXXXXXXXSFDKLKETLDQKTNEGPPYKMELRKPSLPT 379
++ S R+ ++ + DK +TN GPP + P PT
Sbjct: 438 FDAKYVSPNIRRTLDHSKSVPVRRSEISQAPHDK------PRTNIGPPKLLNRASPG-PT 490
Query: 380 VDDTSKSN 403
+ +++ +N
Sbjct: 491 ISNSNTNN 498
>sp|Q9ZJX2|SECG_HELPJ Protein-export membrane protein secG
Length = 198
Score = 33.1 bits (74), Expect = 0.65
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +2
Query: 74 SLNEKYNSEITPTDNSLKRSTTNFVPSKPVQAPSVRVKKPSVLPISESSEK 226
+LN N + PT N L+++ TN P P Q P K+P+ P ES ++
Sbjct: 99 TLNPTLNPTLNPTLNPLEQAPTN--PLMPTQTPKELPKEPAKTPFVESPKQ 147
>sp|P22844|H5A_XENLA Histone H5A (XLH5A) (H1D) (H1-SA)
Length = 196
Score = 32.7 bits (73), Expect = 0.85
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = +2
Query: 38 PAIKKRTSILEKSLNEKYNSEITPTDNSLKRSTTNFVPSKPVQAPSVRVKKPSVLPISES 217
PA K+ + EK + + + P+ K++ T V +KPV+A V+ KPS S
Sbjct: 131 PAKAKKPKVAEKKVKKVAKKKPAPSPKKAKKTKT--VKAKPVRASKVKKAKPSKPKAKAS 188
Query: 218 SEKCRQK 238
+K +K
Sbjct: 189 PKKSGRK 195
>sp|P53858|BNI4_YEAST Protein BNI4
Length = 892
Score = 31.6 bits (70), Expect = 1.9
Identities = 37/158 (23%), Positives = 59/158 (37%), Gaps = 11/158 (6%)
Frame = +2
Query: 20 DTFDSRPAIKKRTSILEKSLNEKYNSEITPTDNSLKRSTTNFVP-----------SKPVQ 166
D+ R + R +ILE+ N E NS STT+ P S +
Sbjct: 195 DSQGPRSKVSTRRTILERDNNLPVKREENTIINSETESTTHSAPFLKEDPKPSPPSSKLY 254
Query: 167 APSVRVKKPSVLPISESSEKCRQKVESAXXXXXXXXXXXXXSFDKLKETLDQKTNEGPPY 346
P VR+ K ++SS Q+ SA S K K+++ +
Sbjct: 255 NPKVRLNKAEARKYTDSSA---QRTTSAGSVLEDT------SMHKKKKSI---------F 296
Query: 347 KMELRKPSLPTVDDTSKSNETESLESKISNSDNVQSKL 460
+K P + + S +NE + S + S N+Q+ L
Sbjct: 297 SFLKKKEPKPVIGNNSVTNEKNKMSSSSTFSMNIQTSL 334
>sp|P57278|Y181_BUCAI Hypothetical protein BU181 (yba2)
Length = 238
Score = 30.8 bits (68), Expect = 3.2
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +2
Query: 2 DEIKVKDTFDSRPAIKKRTSILEKSLNEKYNSEITPTDNSLKRSTTNFVPSKPVQAP 172
+E++ K +R K+ S L +K SEI DN++ + N +PS +P
Sbjct: 67 EELRKKIKILNREETNKKPSFLSNFFKKKSPSEIISNDNNILKKKENILPSNYSSSP 123
>sp|Q28475|ADAM7_MACFA ADAM 7 precursor (A disintegrin and metalloproteinase domain 7)
(Epididymal apical protein I) (EAP I)
Length = 776
Score = 30.4 bits (67), Expect = 4.2
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Frame = -2
Query: 591 DPKKAI*HIKNYA---IIMD---HEAENQPHEL*SNQ--GLVQLLRFRYKNYNLDCTLSE 436
DPK H + Y I+ D + + PH N+ G+V + YK N+ TL
Sbjct: 189 DPKMKAIHNEKYIELFIVADDTVYRRNSHPHNKLRNRIWGMVNFVNMIYKTLNIHVTLVG 248
Query: 435 FEIFDSSDSVSFDLEVSSTV 376
EI+ D + + +T+
Sbjct: 249 IEIWTHEDKIELHSNIETTL 268
>sp|P04866|COAT_BSMV Coat protein (Capsid protein) (Beta-A protein)
Length = 198
Score = 30.4 bits (67), Expect = 4.2
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +2
Query: 116 NSLKRSTTNFVPSKPVQAPSVRVKKPSVLPISESS 220
N KR+TTN PS P QAPS + V P+ +S+
Sbjct: 127 NRAKRATTN--PSPPAQAPSENLTLRDVQPLKDSA 159
>sp|Q62383|SPT6H_MOUSE Transcription elongation factor SPT6
Length = 1726
Score = 30.0 bits (66), Expect = 5.5
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -2
Query: 243 STFWRHFSLDSEIGKTDGFFTRTEGACTGFEGTKFV 136
S W HF S G+ G TR + TGF TKF+
Sbjct: 1210 SEVWNHFDSGSCPGQAIGVKTRLDNGVTGFIPTKFL 1245
>sp|P07768|SUIS_RABIT Sucrase-isomaltase, intestinal [Contains: Sucrase ; Isomaltase ]
Length = 1827
Score = 30.0 bits (66), Expect = 5.5
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -3
Query: 488 SFFDLDXXXXXXIVHYQNLKFLIPVILFHLIWRYHQ--QLAKRVSSTPFYMGDLHWFSDQ 315
+FF D HY N+++ + L+ L ++ H + R FY W D+
Sbjct: 673 AFFGQDSLLVKSSRHYLNIRYTLLPFLYTLFYKAHAFGETVARPVLHEFYEDTNSWVEDR 732
Query: 314 EFL 306
EFL
Sbjct: 733 EFL 735
>sp|O08795|GLU2B_MOUSE Glucosidase II beta subunit precursor (Protein kinase C substrate,
60.1 kDa protein, heavy chain) (PKCSH) (80K-H protein)
Length = 521
Score = 30.0 bits (66), Expect = 5.5
Identities = 28/128 (21%), Positives = 53/128 (41%)
Frame = +2
Query: 74 SLNEKYNSEITPTDNSLKRSTTNFVPSKPVQAPSVRVKKPSVLPISESSEKCRQKVESAX 253
++ +KY SE+ PTD + T + +KP VLP +E E+ ++ E
Sbjct: 275 AIRDKYRSEVPPTDIPVPEET------------EPKEEKPPVLPPTEEEEEEEEEPEE-- 320
Query: 254 XXXXXXXXXXXXSFDKLKETLDQKTNEGPPYKMELRKPSLPTVDDTSKSNETESLESKIS 433
+E +++ E PP ++ +P PT D+ + E+ ++ I
Sbjct: 321 -----------------EEEEEEEEEEAPP-PLQPPQPPSPTEDEKMPPYDEET-QAIID 361
Query: 434 NSDNVQSK 457
+ +SK
Sbjct: 362 AAQEARSK 369
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,719,577
Number of Sequences: 369166
Number of extensions: 1379125
Number of successful extensions: 4400
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4395
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5462583840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)