Planaria EST Database

DrC_01075

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01075
         (602 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q91917|RA51B_XENLA  DNA repair protein RAD51 homolog B (x...   288   6e-78
sp|Q91918|RA51A_XENLA  DNA repair protein RAD51 homolog A (x...   288   6e-78
sp|P37383|RAD51_CHICK  DNA repair protein RAD51 homolog           288   7e-78
sp|Q06609|RAD51_HUMAN  DNA repair protein RAD51 homolog 1 (h...   287   1e-77
sp|P70099|RAD51_CRIGR  DNA repair protein RAD51 homolog 1         287   1e-77
sp|Q08297|RAD51_MOUSE  DNA repair protein RAD51 homolog 1         286   4e-77
sp|Q8MKI8|RAD51_CANFA  DNA repair protein RAD51 homolog 1 (c...   286   4e-77
sp|O77507|RAD51_RABIT  DNA repair protein RAD51 homolog 1         286   4e-77
sp|P36601|RAD51_SCHPO  DNA repair protein rhp51 (RAD51 homolog)   268   1e-71
sp|Q99133|RAD51_USTMA  DNA repair protein RAD51                   256   3e-68

>sp|Q91917|RA51B_XENLA DNA repair protein RAD51 homolog B (xRAD51.2)
          Length = 336

 Score =  288 bits (738), Expect = 6e-78
 Identities = 143/191 (74%), Positives = 158/191 (82%)
 Frame = +3

Query: 3   DMGGGEGKCLYIDTEGTFRPERLLAVSERYGLSGTEVLENVAYARAYNTDHQNELLVTAA 182
           D GGGEGK +YIDTEGTFRPERLLAV+ERYGLSG++VL+NVAYARA+NTDHQ +LL  A+
Sbjct: 146 DRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQAS 205

Query: 183 AMMSESRYALLIVDSATALYRTDYSGRGELSARQMHXXXXXXXXXXXXDEFGXXXXXXXX 362
           AMM+ESRYALLIVDSATALYRTDYSGRGELSARQMH            DEFG        
Sbjct: 206 AMMAESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQ 265

Query: 363 XXXXXDGASMFTADPKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPESEAMFA 542
                DGA+MF ADPKKPIGGNI+AHASTTRLYLRKGRGETRICKIYDSPCLPE+EAMFA
Sbjct: 266 VVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFA 325

Query: 543 ILPDGIGDSKE 575
           I  DG+GD+K+
Sbjct: 326 INADGVGDAKD 336

>sp|Q91918|RA51A_XENLA DNA repair protein RAD51 homolog A (xRAD51.1)
          Length = 336

 Score =  288 bits (738), Expect = 6e-78
 Identities = 143/191 (74%), Positives = 158/191 (82%)
 Frame = +3

Query: 3   DMGGGEGKCLYIDTEGTFRPERLLAVSERYGLSGTEVLENVAYARAYNTDHQNELLVTAA 182
           D GGGEGK +YIDTEGTFRPERLLAV+ERYGLSG++VL+NVAYARA+NTDHQ +LL  A+
Sbjct: 146 DRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQAS 205

Query: 183 AMMSESRYALLIVDSATALYRTDYSGRGELSARQMHXXXXXXXXXXXXDEFGXXXXXXXX 362
           AMM+ESRYALLIVDSATALYRTDYSGRGELSARQMH            DEFG        
Sbjct: 206 AMMAESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQ 265

Query: 363 XXXXXDGASMFTADPKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPESEAMFA 542
                DGA+MF ADPKKPIGGNI+AHASTTRLYLRKGRGETRICKIYDSPCLPE+EAMFA
Sbjct: 266 VVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFA 325

Query: 543 ILPDGIGDSKE 575
           I  DG+GD+K+
Sbjct: 326 INADGVGDAKD 336

>sp|P37383|RAD51_CHICK DNA repair protein RAD51 homolog
          Length = 339

 Score =  288 bits (737), Expect = 7e-78
 Identities = 143/191 (74%), Positives = 157/191 (82%)
 Frame = +3

Query: 3   DMGGGEGKCLYIDTEGTFRPERLLAVSERYGLSGTEVLENVAYARAYNTDHQNELLVTAA 182
           D GGGEGK +YIDTEGTFRPERLLAV+ERYGLSG++VL+NVAYAR +NTDHQ +LL  A+
Sbjct: 149 DRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQAS 208

Query: 183 AMMSESRYALLIVDSATALYRTDYSGRGELSARQMHXXXXXXXXXXXXDEFGXXXXXXXX 362
           AMM+ESRYALLIVDSATALYRTDYSGRGELSARQMH            DEFG        
Sbjct: 209 AMMAESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQ 268

Query: 363 XXXXXDGASMFTADPKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPESEAMFA 542
                DGA+MF ADPKKPIGGNI+AHASTTRLYLRKGRGETRICKIYDSPCLPE+EAMFA
Sbjct: 269 VVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFA 328

Query: 543 ILPDGIGDSKE 575
           I  DG+GD+KE
Sbjct: 329 INADGVGDAKE 339

>sp|Q06609|RAD51_HUMAN DNA repair protein RAD51 homolog 1 (hRAD51) (HsRAD51)
          Length = 339

 Score =  287 bits (735), Expect = 1e-77
 Identities = 143/191 (74%), Positives = 157/191 (82%)
 Frame = +3

Query: 3   DMGGGEGKCLYIDTEGTFRPERLLAVSERYGLSGTEVLENVAYARAYNTDHQNELLVTAA 182
           D GGGEGK +YIDTEGTFRPERLLAV+ERYGLSG++VL+NVAYARA+NTDHQ +LL  A+
Sbjct: 149 DRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQAS 208

Query: 183 AMMSESRYALLIVDSATALYRTDYSGRGELSARQMHXXXXXXXXXXXXDEFGXXXXXXXX 362
           AMM ESRYALLIVDSATALYRTDYSGRGELSARQMH            DEFG        
Sbjct: 209 AMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQ 268

Query: 363 XXXXXDGASMFTADPKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPESEAMFA 542
                DGA+MF ADPKKPIGGNI+AHASTTRLYLRKGRGETRICKIYDSPCLPE+EAMFA
Sbjct: 269 VVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFA 328

Query: 543 ILPDGIGDSKE 575
           I  DG+GD+K+
Sbjct: 329 INADGVGDAKD 339

>sp|P70099|RAD51_CRIGR DNA repair protein RAD51 homolog 1
          Length = 339

 Score =  287 bits (735), Expect = 1e-77
 Identities = 142/191 (74%), Positives = 157/191 (82%)
 Frame = +3

Query: 3   DMGGGEGKCLYIDTEGTFRPERLLAVSERYGLSGTEVLENVAYARAYNTDHQNELLVTAA 182
           D GGGEGK +YIDTEGTFRPERLLAV+ERYGLSG++VL+NVAYAR +NTDHQ +LL  A+
Sbjct: 149 DRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQAS 208

Query: 183 AMMSESRYALLIVDSATALYRTDYSGRGELSARQMHXXXXXXXXXXXXDEFGXXXXXXXX 362
           AMM ESRYALLIVDSATALYRTDYSGRGELSARQMH            DEFG        
Sbjct: 209 AMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQ 268

Query: 363 XXXXXDGASMFTADPKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPESEAMFA 542
                DGA+MFTADPKKPIGGNI+AHASTTRLYLRKGRGETRICK+YDSPCLPE+EAMFA
Sbjct: 269 VVAQVDGAAMFTADPKKPIGGNIIAHASTTRLYLRKGRGETRICKVYDSPCLPEAEAMFA 328

Query: 543 ILPDGIGDSKE 575
           I  DG+GD+K+
Sbjct: 329 INADGVGDAKD 339

>sp|Q08297|RAD51_MOUSE DNA repair protein RAD51 homolog 1
          Length = 339

 Score =  286 bits (731), Expect = 4e-77
 Identities = 142/191 (74%), Positives = 156/191 (81%)
 Frame = +3

Query: 3   DMGGGEGKCLYIDTEGTFRPERLLAVSERYGLSGTEVLENVAYARAYNTDHQNELLVTAA 182
           D GGGEGK +YIDTEGTFRPERLLAV+ERYGLSG++VL+NVAYAR +NTDHQ +LL  A+
Sbjct: 149 DRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQAS 208

Query: 183 AMMSESRYALLIVDSATALYRTDYSGRGELSARQMHXXXXXXXXXXXXDEFGXXXXXXXX 362
           AMM ESRYALLIVDSATALYRTDYSGRGELSARQMH            DEFG        
Sbjct: 209 AMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQ 268

Query: 363 XXXXXDGASMFTADPKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPESEAMFA 542
                DGA+MF ADPKKPIGGNI+AHASTTRLYLRKGRGETRICKIYDSPCLPE+EAMFA
Sbjct: 269 VVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFA 328

Query: 543 ILPDGIGDSKE 575
           I  DG+GD+K+
Sbjct: 329 INADGVGDAKD 339

>sp|Q8MKI8|RAD51_CANFA DNA repair protein RAD51 homolog 1 (cRad51)
          Length = 339

 Score =  286 bits (731), Expect = 4e-77
 Identities = 142/191 (74%), Positives = 156/191 (81%)
 Frame = +3

Query: 3   DMGGGEGKCLYIDTEGTFRPERLLAVSERYGLSGTEVLENVAYARAYNTDHQNELLVTAA 182
           D GGGEGK +YIDTEGTFRPERLLAV+ERYGLSG++VL+NVAYAR +NTDHQ +LL  A+
Sbjct: 149 DRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQAS 208

Query: 183 AMMSESRYALLIVDSATALYRTDYSGRGELSARQMHXXXXXXXXXXXXDEFGXXXXXXXX 362
           AMM ESRYALLIVDSATALYRTDYSGRGELSARQMH            DEFG        
Sbjct: 209 AMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQ 268

Query: 363 XXXXXDGASMFTADPKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPESEAMFA 542
                DGA+MF ADPKKPIGGNI+AHASTTRLYLRKGRGETRICKIYDSPCLPE+EAMFA
Sbjct: 269 VVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFA 328

Query: 543 ILPDGIGDSKE 575
           I  DG+GD+K+
Sbjct: 329 INADGVGDAKD 339

>sp|O77507|RAD51_RABIT DNA repair protein RAD51 homolog 1
          Length = 339

 Score =  286 bits (731), Expect = 4e-77
 Identities = 142/191 (74%), Positives = 156/191 (81%)
 Frame = +3

Query: 3   DMGGGEGKCLYIDTEGTFRPERLLAVSERYGLSGTEVLENVAYARAYNTDHQNELLVTAA 182
           D GGGEGK +YIDTEGTFRPERLLAV+ERYGLSG++VL+NVAYAR +NTDHQ +LL  A+
Sbjct: 149 DRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQAS 208

Query: 183 AMMSESRYALLIVDSATALYRTDYSGRGELSARQMHXXXXXXXXXXXXDEFGXXXXXXXX 362
           AMM ESRYALLIVDSATALYRTDYSGRGELSARQMH            DEFG        
Sbjct: 209 AMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVTVVITNQ 268

Query: 363 XXXXXDGASMFTADPKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPESEAMFA 542
                DGA+MF ADPKKPIGGNI+AHASTTRLYLRKGRGETRICKIYDSPCLPE+EAMFA
Sbjct: 269 VVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFA 328

Query: 543 ILPDGIGDSKE 575
           I  DG+GD+K+
Sbjct: 329 INADGVGDAKD 339

>sp|P36601|RAD51_SCHPO DNA repair protein rhp51 (RAD51 homolog)
          Length = 365

 Score =  268 bits (684), Expect = 1e-71
 Identities = 137/191 (71%), Positives = 149/191 (78%)
 Frame = +3

Query: 3   DMGGGEGKCLYIDTEGTFRPERLLAVSERYGLSGTEVLENVAYARAYNTDHQNELLVTAA 182
           DMGGGEGKCLYIDTEGTFRP RLLAV++RYGL+G EVL+NVAYARAYN DHQ ELL  AA
Sbjct: 171 DMGGGEGKCLYIDTEGTFRPVRLLAVADRYGLNGEEVLDNVAYARAYNADHQLELLQQAA 230

Query: 183 AMMSESRYALLIVDSATALYRTDYSGRGELSARQMHXXXXXXXXXXXXDEFGXXXXXXXX 362
            MMSESR++LL+VDS TALYRTD+SGRGELSARQMH            DEFG        
Sbjct: 231 NMMSESRFSLLVVDSCTALYRTDFSGRGELSARQMHLARFMRTLQRLADEFGIAVVITNQ 290

Query: 363 XXXXXDGASMFTADPKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPESEAMFA 542
                DG S F  DPKKPIGGNI+AH+STTRL LRKGRGE RICKIYDSPCLPESEA+FA
Sbjct: 291 VVAQVDGIS-FNPDPKKPIGGNILAHSSTTRLSLRKGRGEQRICKIYDSPCLPESEAIFA 349

Query: 543 ILPDGIGDSKE 575
           I  DG+GD KE
Sbjct: 350 INSDGVGDPKE 360

>sp|Q99133|RAD51_USTMA DNA repair protein RAD51
          Length = 339

 Score =  256 bits (654), Expect = 3e-68
 Identities = 129/188 (68%), Positives = 148/188 (78%)
 Frame = +3

Query: 3   DMGGGEGKCLYIDTEGTFRPERLLAVSERYGLSGTEVLENVAYARAYNTDHQNELLVTAA 182
           DMGGGEGKCLYIDTE TFRP RLLAV+ER+GL+G EVL+NVAYARAYN DHQ +LL+ A+
Sbjct: 149 DMGGGEGKCLYIDTENTFRPTRLLAVAERFGLNGEEVLDNVAYARAYNADHQLQLLMQAS 208

Query: 183 AMMSESRYALLIVDSATALYRTDYSGRGELSARQMHXXXXXXXXXXXXDEFGXXXXXXXX 362
           AMM+ESR++LLIVDS T+LYRTD+SGRGELSARQMH            DEFG        
Sbjct: 209 AMMAESRFSLLIVDSLTSLYRTDFSGRGELSARQMHLAKFLRGLMRLADEFGVAVVITNQ 268

Query: 363 XXXXXDGASMFTADPKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPESEAMFA 542
                DGA+ FTAD KKPIGGNI+AHASTTRL LRKGRG  RIC+I DSPCLPE++A+FA
Sbjct: 269 VVAQVDGATAFTADAKKPIGGNIVAHASTTRLSLRKGRGNQRICRIADSPCLPEADAVFA 328

Query: 543 ILPDGIGD 566
           I P+GI D
Sbjct: 329 IGPEGIID 336

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,733,297
Number of Sequences: 369166
Number of extensions: 917133
Number of successful extensions: 2562
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2502
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4650991475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01075

  1. Dr_sW_026_P07
  2. Dr_sW_018_B03