Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_P07
(488 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q91917|RA51B_XENLA DNA repair protein RAD51 homolog B (x... 238 6e-63
sp|Q91918|RA51A_XENLA DNA repair protein RAD51 homolog A (x... 238 6e-63
sp|P70099|RAD51_CRIGR DNA repair protein RAD51 homolog 1 237 9e-63
sp|Q06609|RAD51_HUMAN DNA repair protein RAD51 homolog 1 (h... 237 1e-62
sp|P37383|RAD51_CHICK DNA repair protein RAD51 homolog 236 2e-62
sp|Q08297|RAD51_MOUSE DNA repair protein RAD51 homolog 1 235 4e-62
sp|Q8MKI8|RAD51_CANFA DNA repair protein RAD51 homolog 1 (c... 235 4e-62
sp|O77507|RAD51_RABIT DNA repair protein RAD51 homolog 1 235 4e-62
sp|Q99133|RAD51_USTMA DNA repair protein RAD51 218 5e-57
sp|P36601|RAD51_SCHPO DNA repair protein rhp51 (RAD51 homolog) 217 1e-56
>sp|Q91917|RA51B_XENLA DNA repair protein RAD51 homolog B (xRAD51.2)
Length = 336
Score = 238 bits (607), Expect = 6e-63
Identities = 120/162 (74%), Positives = 131/162 (80%)
Frame = +3
Query: 3 DMGGGEGKCLYIDTEGTFRPERLLAVSERYGLSGTEVLENVAYARAYNTDHQNELLVTAA 182
D GGGEGK +YIDTEGTFRPERLLAV+ERYGLSG++VL+NVAYARA+NTDHQ +LL A+
Sbjct: 146 DRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQAS 205
Query: 183 AMMSESRYALLIVDSATALYRTDYSGRGELSARQMHXXXXXXXXXXXXDEFGXXXXXXXX 362
AMM+ESRYALLIVDSATALYRTDYSGRGELSARQMH DEFG
Sbjct: 206 AMMAESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQ 265
Query: 363 XXXXXDGASMFTADPKKPIGGNIMAHASTTRLYLRKGRGETR 488
DGA+MF ADPKKPIGGNI+AHASTTRLYLRKGRGETR
Sbjct: 266 VVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETR 307
>sp|Q91918|RA51A_XENLA DNA repair protein RAD51 homolog A (xRAD51.1)
Length = 336
Score = 238 bits (607), Expect = 6e-63
Identities = 120/162 (74%), Positives = 131/162 (80%)
Frame = +3
Query: 3 DMGGGEGKCLYIDTEGTFRPERLLAVSERYGLSGTEVLENVAYARAYNTDHQNELLVTAA 182
D GGGEGK +YIDTEGTFRPERLLAV+ERYGLSG++VL+NVAYARA+NTDHQ +LL A+
Sbjct: 146 DRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQAS 205
Query: 183 AMMSESRYALLIVDSATALYRTDYSGRGELSARQMHXXXXXXXXXXXXDEFGXXXXXXXX 362
AMM+ESRYALLIVDSATALYRTDYSGRGELSARQMH DEFG
Sbjct: 206 AMMAESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQ 265
Query: 363 XXXXXDGASMFTADPKKPIGGNIMAHASTTRLYLRKGRGETR 488
DGA+MF ADPKKPIGGNI+AHASTTRLYLRKGRGETR
Sbjct: 266 VVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETR 307
>sp|P70099|RAD51_CRIGR DNA repair protein RAD51 homolog 1
Length = 339
Score = 237 bits (605), Expect = 9e-63
Identities = 120/162 (74%), Positives = 130/162 (80%)
Frame = +3
Query: 3 DMGGGEGKCLYIDTEGTFRPERLLAVSERYGLSGTEVLENVAYARAYNTDHQNELLVTAA 182
D GGGEGK +YIDTEGTFRPERLLAV+ERYGLSG++VL+NVAYAR +NTDHQ +LL A+
Sbjct: 149 DRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQAS 208
Query: 183 AMMSESRYALLIVDSATALYRTDYSGRGELSARQMHXXXXXXXXXXXXDEFGXXXXXXXX 362
AMM ESRYALLIVDSATALYRTDYSGRGELSARQMH DEFG
Sbjct: 209 AMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQ 268
Query: 363 XXXXXDGASMFTADPKKPIGGNIMAHASTTRLYLRKGRGETR 488
DGA+MFTADPKKPIGGNI+AHASTTRLYLRKGRGETR
Sbjct: 269 VVAQVDGAAMFTADPKKPIGGNIIAHASTTRLYLRKGRGETR 310
>sp|Q06609|RAD51_HUMAN DNA repair protein RAD51 homolog 1 (hRAD51) (HsRAD51)
Length = 339
Score = 237 bits (604), Expect = 1e-62
Identities = 120/162 (74%), Positives = 130/162 (80%)
Frame = +3
Query: 3 DMGGGEGKCLYIDTEGTFRPERLLAVSERYGLSGTEVLENVAYARAYNTDHQNELLVTAA 182
D GGGEGK +YIDTEGTFRPERLLAV+ERYGLSG++VL+NVAYARA+NTDHQ +LL A+
Sbjct: 149 DRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQAS 208
Query: 183 AMMSESRYALLIVDSATALYRTDYSGRGELSARQMHXXXXXXXXXXXXDEFGXXXXXXXX 362
AMM ESRYALLIVDSATALYRTDYSGRGELSARQMH DEFG
Sbjct: 209 AMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQ 268
Query: 363 XXXXXDGASMFTADPKKPIGGNIMAHASTTRLYLRKGRGETR 488
DGA+MF ADPKKPIGGNI+AHASTTRLYLRKGRGETR
Sbjct: 269 VVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETR 310
>sp|P37383|RAD51_CHICK DNA repair protein RAD51 homolog
Length = 339
Score = 236 bits (603), Expect = 2e-62
Identities = 119/162 (73%), Positives = 130/162 (80%)
Frame = +3
Query: 3 DMGGGEGKCLYIDTEGTFRPERLLAVSERYGLSGTEVLENVAYARAYNTDHQNELLVTAA 182
D GGGEGK +YIDTEGTFRPERLLAV+ERYGLSG++VL+NVAYAR +NTDHQ +LL A+
Sbjct: 149 DRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQAS 208
Query: 183 AMMSESRYALLIVDSATALYRTDYSGRGELSARQMHXXXXXXXXXXXXDEFGXXXXXXXX 362
AMM+ESRYALLIVDSATALYRTDYSGRGELSARQMH DEFG
Sbjct: 209 AMMAESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQ 268
Query: 363 XXXXXDGASMFTADPKKPIGGNIMAHASTTRLYLRKGRGETR 488
DGA+MF ADPKKPIGGNI+AHASTTRLYLRKGRGETR
Sbjct: 269 VVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETR 310
>sp|Q08297|RAD51_MOUSE DNA repair protein RAD51 homolog 1
Length = 339
Score = 235 bits (600), Expect = 4e-62
Identities = 119/162 (73%), Positives = 129/162 (79%)
Frame = +3
Query: 3 DMGGGEGKCLYIDTEGTFRPERLLAVSERYGLSGTEVLENVAYARAYNTDHQNELLVTAA 182
D GGGEGK +YIDTEGTFRPERLLAV+ERYGLSG++VL+NVAYAR +NTDHQ +LL A+
Sbjct: 149 DRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQAS 208
Query: 183 AMMSESRYALLIVDSATALYRTDYSGRGELSARQMHXXXXXXXXXXXXDEFGXXXXXXXX 362
AMM ESRYALLIVDSATALYRTDYSGRGELSARQMH DEFG
Sbjct: 209 AMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQ 268
Query: 363 XXXXXDGASMFTADPKKPIGGNIMAHASTTRLYLRKGRGETR 488
DGA+MF ADPKKPIGGNI+AHASTTRLYLRKGRGETR
Sbjct: 269 VVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETR 310
>sp|Q8MKI8|RAD51_CANFA DNA repair protein RAD51 homolog 1 (cRad51)
Length = 339
Score = 235 bits (600), Expect = 4e-62
Identities = 119/162 (73%), Positives = 129/162 (79%)
Frame = +3
Query: 3 DMGGGEGKCLYIDTEGTFRPERLLAVSERYGLSGTEVLENVAYARAYNTDHQNELLVTAA 182
D GGGEGK +YIDTEGTFRPERLLAV+ERYGLSG++VL+NVAYAR +NTDHQ +LL A+
Sbjct: 149 DRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQAS 208
Query: 183 AMMSESRYALLIVDSATALYRTDYSGRGELSARQMHXXXXXXXXXXXXDEFGXXXXXXXX 362
AMM ESRYALLIVDSATALYRTDYSGRGELSARQMH DEFG
Sbjct: 209 AMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQ 268
Query: 363 XXXXXDGASMFTADPKKPIGGNIMAHASTTRLYLRKGRGETR 488
DGA+MF ADPKKPIGGNI+AHASTTRLYLRKGRGETR
Sbjct: 269 VVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETR 310
>sp|O77507|RAD51_RABIT DNA repair protein RAD51 homolog 1
Length = 339
Score = 235 bits (600), Expect = 4e-62
Identities = 119/162 (73%), Positives = 129/162 (79%)
Frame = +3
Query: 3 DMGGGEGKCLYIDTEGTFRPERLLAVSERYGLSGTEVLENVAYARAYNTDHQNELLVTAA 182
D GGGEGK +YIDTEGTFRPERLLAV+ERYGLSG++VL+NVAYAR +NTDHQ +LL A+
Sbjct: 149 DRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQAS 208
Query: 183 AMMSESRYALLIVDSATALYRTDYSGRGELSARQMHXXXXXXXXXXXXDEFGXXXXXXXX 362
AMM ESRYALLIVDSATALYRTDYSGRGELSARQMH DEFG
Sbjct: 209 AMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVTVVITNQ 268
Query: 363 XXXXXDGASMFTADPKKPIGGNIMAHASTTRLYLRKGRGETR 488
DGA+MF ADPKKPIGGNI+AHASTTRLYLRKGRGETR
Sbjct: 269 VVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETR 310
>sp|Q99133|RAD51_USTMA DNA repair protein RAD51
Length = 339
Score = 218 bits (556), Expect = 5e-57
Identities = 111/162 (68%), Positives = 125/162 (77%)
Frame = +3
Query: 3 DMGGGEGKCLYIDTEGTFRPERLLAVSERYGLSGTEVLENVAYARAYNTDHQNELLVTAA 182
DMGGGEGKCLYIDTE TFRP RLLAV+ER+GL+G EVL+NVAYARAYN DHQ +LL+ A+
Sbjct: 149 DMGGGEGKCLYIDTENTFRPTRLLAVAERFGLNGEEVLDNVAYARAYNADHQLQLLMQAS 208
Query: 183 AMMSESRYALLIVDSATALYRTDYSGRGELSARQMHXXXXXXXXXXXXDEFGXXXXXXXX 362
AMM+ESR++LLIVDS T+LYRTD+SGRGELSARQMH DEFG
Sbjct: 209 AMMAESRFSLLIVDSLTSLYRTDFSGRGELSARQMHLAKFLRGLMRLADEFGVAVVITNQ 268
Query: 363 XXXXXDGASMFTADPKKPIGGNIMAHASTTRLYLRKGRGETR 488
DGA+ FTAD KKPIGGNI+AHASTTRL LRKGRG R
Sbjct: 269 VVAQVDGATAFTADAKKPIGGNIVAHASTTRLSLRKGRGNQR 310
>sp|P36601|RAD51_SCHPO DNA repair protein rhp51 (RAD51 homolog)
Length = 365
Score = 217 bits (553), Expect = 1e-56
Identities = 113/162 (69%), Positives = 123/162 (75%)
Frame = +3
Query: 3 DMGGGEGKCLYIDTEGTFRPERLLAVSERYGLSGTEVLENVAYARAYNTDHQNELLVTAA 182
DMGGGEGKCLYIDTEGTFRP RLLAV++RYGL+G EVL+NVAYARAYN DHQ ELL AA
Sbjct: 171 DMGGGEGKCLYIDTEGTFRPVRLLAVADRYGLNGEEVLDNVAYARAYNADHQLELLQQAA 230
Query: 183 AMMSESRYALLIVDSATALYRTDYSGRGELSARQMHXXXXXXXXXXXXDEFGXXXXXXXX 362
MMSESR++LL+VDS TALYRTD+SGRGELSARQMH DEFG
Sbjct: 231 NMMSESRFSLLVVDSCTALYRTDFSGRGELSARQMHLARFMRTLQRLADEFGIAVVITNQ 290
Query: 363 XXXXXDGASMFTADPKKPIGGNIMAHASTTRLYLRKGRGETR 488
DG S F DPKKPIGGNI+AH+STTRL LRKGRGE R
Sbjct: 291 VVAQVDGIS-FNPDPKKPIGGNILAHSSTTRLSLRKGRGEQR 331
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,595,653
Number of Sequences: 369166
Number of extensions: 660545
Number of successful extensions: 1821
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1761
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2970720600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)