Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_B03
(216 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P70099|RAD51_CRIGR DNA repair protein RAD51 homolog 1 120 1e-27
sp|P37383|RAD51_CHICK DNA repair protein RAD51 homolog 119 2e-27
sp|Q06609|RAD51_HUMAN DNA repair protein RAD51 homolog 1 (h... 118 4e-27
sp|Q91917|RA51B_XENLA DNA repair protein RAD51 homolog B (x... 118 4e-27
sp|Q08297|RAD51_MOUSE DNA repair protein RAD51 homolog 1 118 4e-27
sp|Q91918|RA51A_XENLA DNA repair protein RAD51 homolog A (x... 118 4e-27
sp|Q8MKI8|RAD51_CANFA DNA repair protein RAD51 homolog 1 (c... 118 4e-27
sp|O77507|RAD51_RABIT DNA repair protein RAD51 homolog 1 118 4e-27
sp|Q27297|RAD51_DROME DNA repair protein Rad51 homolog (Rec... 114 9e-26
sp|P36601|RAD51_SCHPO DNA repair protein rhp51 (RAD51 homolog) 107 6e-24
>sp|P70099|RAD51_CRIGR DNA repair protein RAD51 homolog 1
Length = 339
Score = 120 bits (300), Expect = 1e-27
Identities = 54/63 (85%), Positives = 61/63 (96%)
Frame = +1
Query: 1 SMFTADPKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPESEAMFAILPDGIGD 180
+MFTADPKKPIGGNI+AHASTTRLYLRKGRGETRICK+YDSPCLPE+EAMFAI DG+GD
Sbjct: 277 AMFTADPKKPIGGNIIAHASTTRLYLRKGRGETRICKVYDSPCLPEAEAMFAINADGVGD 336
Query: 181 SKE 189
+K+
Sbjct: 337 AKD 339
>sp|P37383|RAD51_CHICK DNA repair protein RAD51 homolog
Length = 339
Score = 119 bits (299), Expect = 2e-27
Identities = 55/63 (87%), Positives = 60/63 (95%)
Frame = +1
Query: 1 SMFTADPKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPESEAMFAILPDGIGD 180
+MF ADPKKPIGGNI+AHASTTRLYLRKGRGETRICKIYDSPCLPE+EAMFAI DG+GD
Sbjct: 277 AMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGD 336
Query: 181 SKE 189
+KE
Sbjct: 337 AKE 339
>sp|Q06609|RAD51_HUMAN DNA repair protein RAD51 homolog 1 (hRAD51) (HsRAD51)
Length = 339
Score = 118 bits (296), Expect = 4e-27
Identities = 54/63 (85%), Positives = 60/63 (95%)
Frame = +1
Query: 1 SMFTADPKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPESEAMFAILPDGIGD 180
+MF ADPKKPIGGNI+AHASTTRLYLRKGRGETRICKIYDSPCLPE+EAMFAI DG+GD
Sbjct: 277 AMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGD 336
Query: 181 SKE 189
+K+
Sbjct: 337 AKD 339
>sp|Q91917|RA51B_XENLA DNA repair protein RAD51 homolog B (xRAD51.2)
Length = 336
Score = 118 bits (296), Expect = 4e-27
Identities = 54/63 (85%), Positives = 60/63 (95%)
Frame = +1
Query: 1 SMFTADPKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPESEAMFAILPDGIGD 180
+MF ADPKKPIGGNI+AHASTTRLYLRKGRGETRICKIYDSPCLPE+EAMFAI DG+GD
Sbjct: 274 AMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGD 333
Query: 181 SKE 189
+K+
Sbjct: 334 AKD 336
>sp|Q08297|RAD51_MOUSE DNA repair protein RAD51 homolog 1
Length = 339
Score = 118 bits (296), Expect = 4e-27
Identities = 54/63 (85%), Positives = 60/63 (95%)
Frame = +1
Query: 1 SMFTADPKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPESEAMFAILPDGIGD 180
+MF ADPKKPIGGNI+AHASTTRLYLRKGRGETRICKIYDSPCLPE+EAMFAI DG+GD
Sbjct: 277 AMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGD 336
Query: 181 SKE 189
+K+
Sbjct: 337 AKD 339
>sp|Q91918|RA51A_XENLA DNA repair protein RAD51 homolog A (xRAD51.1)
Length = 336
Score = 118 bits (296), Expect = 4e-27
Identities = 54/63 (85%), Positives = 60/63 (95%)
Frame = +1
Query: 1 SMFTADPKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPESEAMFAILPDGIGD 180
+MF ADPKKPIGGNI+AHASTTRLYLRKGRGETRICKIYDSPCLPE+EAMFAI DG+GD
Sbjct: 274 AMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGD 333
Query: 181 SKE 189
+K+
Sbjct: 334 AKD 336
>sp|Q8MKI8|RAD51_CANFA DNA repair protein RAD51 homolog 1 (cRad51)
Length = 339
Score = 118 bits (296), Expect = 4e-27
Identities = 54/63 (85%), Positives = 60/63 (95%)
Frame = +1
Query: 1 SMFTADPKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPESEAMFAILPDGIGD 180
+MF ADPKKPIGGNI+AHASTTRLYLRKGRGETRICKIYDSPCLPE+EAMFAI DG+GD
Sbjct: 277 AMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGD 336
Query: 181 SKE 189
+K+
Sbjct: 337 AKD 339
>sp|O77507|RAD51_RABIT DNA repair protein RAD51 homolog 1
Length = 339
Score = 118 bits (296), Expect = 4e-27
Identities = 54/63 (85%), Positives = 60/63 (95%)
Frame = +1
Query: 1 SMFTADPKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPESEAMFAILPDGIGD 180
+MF ADPKKPIGGNI+AHASTTRLYLRKGRGETRICKIYDSPCLPE+EAMFAI DG+GD
Sbjct: 277 AMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGD 336
Query: 181 SKE 189
+K+
Sbjct: 337 AKD 339
>sp|Q27297|RAD51_DROME DNA repair protein Rad51 homolog (RecA protein homolog) (Spindle-A
protein)
Length = 336
Score = 114 bits (284), Expect = 9e-26
Identities = 52/58 (89%), Positives = 57/58 (98%)
Frame = +1
Query: 16 DPKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPESEAMFAILPDGIGDSKE 189
D KKPIGG+IMAH+STTRLYLRKG+GETRICKIYDSPCLPESEAMFAILPDGIGD++E
Sbjct: 278 DAKKPIGGHIMAHSSTTRLYLRKGKGETRICKIYDSPCLPESEAMFAILPDGIGDARE 335
>sp|P36601|RAD51_SCHPO DNA repair protein rhp51 (RAD51 homolog)
Length = 365
Score = 107 bits (268), Expect = 6e-24
Identities = 50/61 (81%), Positives = 54/61 (88%)
Frame = +1
Query: 7 FTADPKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPESEAMFAILPDGIGDSK 186
F DPKKPIGGNI+AH+STTRL LRKGRGE RICKIYDSPCLPESEA+FAI DG+GD K
Sbjct: 300 FNPDPKKPIGGNILAHSSTTRLSLRKGRGEQRICKIYDSPCLPESEAIFAINSDGVGDPK 359
Query: 187 E 189
E
Sbjct: 360 E 360
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,272,190
Number of Sequences: 369166
Number of extensions: 350334
Number of successful extensions: 969
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 68,354,980
effective HSP length: 43
effective length of database: 60,411,375
effective search space used: 1691518500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)