Planaria EST Database


DrC_01073

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01073
         (850 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O15400|STX7_HUMAN  Syntaxin-7                                   50   1e-05
sp|Q9SUJ1|SYP43_ARATH  Syntaxin 43 (AtSYP43)                       50   1e-05
sp|O65359|SY41_ARATH  Syntaxin 41 (AtSYP41) (AtTLG2a)              49   2e-05
sp|O70439|STX7_MOUSE  Syntaxin-7                                   49   2e-05
sp|Q9P6P1|TLG2_SCHPO  t-SNARE affecting a late Golgi compart...    48   3e-05
sp|O70257|STX7_RAT  Syntaxin-7                                     47   7e-05
sp|Q9SWH4|SY42_ARATH  Syntaxin 42 (AtSYP42) (AtTLG2b)              46   1e-04
sp|O14662|STX16_HUMAN  Syntaxin-16 (Syn16)                         46   1e-04
sp|Q9SRV7|S131_ARATH  Putative syntaxin 131 (AtSYP131)             45   3e-04
sp|P91409|STX4_CAEEL  Putative syntaxin syn-4                      43   0.001
>sp|O15400|STX7_HUMAN Syntaxin-7
          Length = 261

 Score = 49.7 bits (117), Expect = 1e-05
 Identities = 46/210 (21%), Positives = 88/210 (41%), Gaps = 38/210 (18%)
 Frame = +1

Query: 1   QKLTESYVDITRNMDDLQRLIPTTNDHEHTAKKTQF-RQLSKRVENQMKHAQNLSS---- 165
           QK+T+  V+I R ++ L     +    +   +K Q+  QL+K  +  +K   +L +    
Sbjct: 23  QKITQCSVEIQRTLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKYIKEFGSLPTTPSE 82

Query: 166 ----EIQK----------------------EMEKHYMNKKMAASVLSRNXXXXXXXXXXX 267
               +IQK                      E EK ++ +  A+S +S +           
Sbjct: 83  QRQRKIQKDRLVAEFTTSLTNFQKVQRQAAEREKEFVARVRASSRVSGSFPEDSSKERNL 142

Query: 268 XXXX-------EIQLSTIEDNQLKEALEEQQQCEKLVKSVVQLEEMMVKMSEMINEQGET 426
                      ++Q   I ++ L+   E +    +L   ++ + E+   +  MI+EQG+ 
Sbjct: 143 VSWESQTQPQVQVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDV 202

Query: 427 VDRIVLQVEEAHENVEEGNKQLNQAVDSHR 516
           +D I   VE A  +V++ N+QL++A D  R
Sbjct: 203 IDSIEANVENAEVHVQQANQQLSRAADYQR 232
>sp|Q9SUJ1|SYP43_ARATH Syntaxin 43 (AtSYP43)
          Length = 331

 Score = 49.7 bits (117), Expect = 1e-05
 Identities = 40/170 (23%), Positives = 83/170 (48%), Gaps = 7/170 (4%)
 Frame = +1

Query: 28  ITRNMDDLQRLIPTTNDHEHTAKKTQFRQLSKRVENQMKHAQNLSSEIQKEMEKHY---- 195
           + ++   LQRL       +   +K   R L+  +       QNLS E++K+   +     
Sbjct: 141 LKKSEKQLQRLSAAGPSEDSNVRKNVQRSLATDL-------QNLSMELRKKQSTYLKRLR 193

Query: 196 MNKKMAASV---LSRNXXXXXXXXXXXXXXXEIQLSTIEDNQLKEALEEQQQCEKLVKSV 366
           + K+  A +   L+ +               E Q+S I+ ++ + ++E +++ +++V+SV
Sbjct: 194 LQKEDGADLEMNLNGSRYKAEDDDFDDMVFSEHQMSKIKKSE-EISIEREKEIQQVVESV 252

Query: 367 VQLEEMMVKMSEMINEQGETVDRIVLQVEEAHENVEEGNKQLNQAVDSHR 516
            +L ++M  +S ++ +QG  VDRI   ++     V++G KQL +A  + R
Sbjct: 253 SELAQIMKDLSALVIDQGTIVDRIDYNIQNVASTVDDGLKQLQKAERTQR 302
>sp|O65359|SY41_ARATH Syntaxin 41 (AtSYP41) (AtTLG2a)
          Length = 322

 Score = 48.9 bits (115), Expect = 2e-05
 Identities = 39/163 (23%), Positives = 76/163 (46%)
 Frame = +1

Query: 28  ITRNMDDLQRLIPTTNDHEHTAKKTQFRQLSKRVENQMKHAQNLSSEIQKEMEKHYMNKK 207
           + ++   LQRL  +    +   +K   R L+  ++      +   S   K + +   +  
Sbjct: 133 LKKSEKQLQRLSASGPSEDSNVRKNVQRSLATDLQLLSMELRKKQSTYLKRLRQQKEDGM 192

Query: 208 MAASVLSRNXXXXXXXXXXXXXXXEIQLSTIEDNQLKEALEEQQQCEKLVKSVVQLEEMM 387
                LSRN               E Q+S I+ ++ + ++E +++ +++V+SV  L ++M
Sbjct: 193 DLEMNLSRNRYRPEEDDFGDMLN-EHQMSKIKKSE-EVSVEREKEIQQVVESVNDLAQIM 250

Query: 388 VKMSEMINEQGETVDRIVLQVEEAHENVEEGNKQLNQAVDSHR 516
             +S ++ +QG  VDRI   +E     VE+G KQL +A  + R
Sbjct: 251 KDLSALVIDQGTIVDRIDYNIENVATTVEDGLKQLQKAERTQR 293
>sp|O70439|STX7_MOUSE Syntaxin-7
          Length = 261

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 23/79 (29%), Positives = 44/79 (55%)
 Frame = +1

Query: 280 EIQLSTIEDNQLKEALEEQQQCEKLVKSVVQLEEMMVKMSEMINEQGETVDRIVLQVEEA 459
           ++Q   I ++ L+   E +    +L   ++ + E+   +  MI+EQG+ +D I   VE A
Sbjct: 154 QVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDMIDSIEANVESA 213

Query: 460 HENVEEGNKQLNQAVDSHR 516
             +V++ N+QL++A D  R
Sbjct: 214 EVHVQQANQQLSRAADYQR 232
>sp|Q9P6P1|TLG2_SCHPO t-SNARE affecting a late Golgi compartment protein 2 (Syntaxin
           tlg2)
          Length = 301

 Score = 48.1 bits (113), Expect = 3e-05
 Identities = 41/179 (22%), Positives = 78/179 (43%), Gaps = 7/179 (3%)
 Frame = +1

Query: 1   QKLTESYVDITRNMDDLQRLIPTTNDHEHTAKKTQFRQLSKRVENQMKHAQNLSSEIQKE 180
           Q+LT   + IT++    Q+L+  T    ++A  ++       + N     Q  S++ +K+
Sbjct: 102 QRLT---IQITQDFQRCQKLLQVTKAQTNSATGSEALMAKNFLSNLASRIQTESAQFRKK 158

Query: 181 MEKHYMNKKMAASVLSRNXXXXXXXXXXXXXXXEIQLSTIEDNQLKEALEEQQQC----- 345
              +   KK+    L+ N                I  STI+   L E   E +Q      
Sbjct: 159 QSTYL--KKLRG--LNANISPVESKLDETVSDVAISQSTIQQVALMEEQGEDEQAIRHER 214

Query: 346 --EKLVKSVVQLEEMMVKMSEMINEQGETVDRIVLQVEEAHENVEEGNKQLNQAVDSHR 516
              K+ + +++L +M   +  ++ EQG  VDRI   +E+   + +   K+L +A +SH+
Sbjct: 215 AVAKIAEGIIELAQMFQDLQVLVIEQGALVDRIDFNIEQTQVHAKSAEKELIKA-ESHQ 272
>sp|O70257|STX7_RAT Syntaxin-7
          Length = 261

 Score = 47.0 bits (110), Expect = 7e-05
 Identities = 22/79 (27%), Positives = 44/79 (55%)
 Frame = +1

Query: 280 EIQLSTIEDNQLKEALEEQQQCEKLVKSVVQLEEMMVKMSEMINEQGETVDRIVLQVEEA 459
           ++Q   I ++ L+   E +    +L   ++ + E+   +  MI+EQG+ +D I   VE A
Sbjct: 154 QVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESA 213

Query: 460 HENVEEGNKQLNQAVDSHR 516
             +V++ N+QL++A +  R
Sbjct: 214 EVHVQQANQQLSRAANYQR 232
>sp|Q9SWH4|SY42_ARATH Syntaxin 42 (AtSYP42) (AtTLG2b)
          Length = 323

 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 39/176 (22%), Positives = 78/176 (44%), Gaps = 4/176 (2%)
 Frame = +1

Query: 1   QKLTESYVDITRNMDDLQRLIPTTNDHEHT-AKKTQFRQLSKRVENQMKHAQNLSSEIQK 177
           + LT    D+ R  +   +++ T    E +  +K   R L+  ++N     +   S   K
Sbjct: 120 EMLTHEITDLLRKSEKRLQMLSTRGPSEESNLRKNVQRSLATDLQNLSMELRRKQSTYLK 179

Query: 178 EMEKHYMNKK---MAASVLSRNXXXXXXXXXXXXXXXEIQLSTIEDNQLKEALEEQQQCE 348
            +++    +    +  +V  +                E Q   +++ Q   A E +++ +
Sbjct: 180 RLQQQKEGQDEVDLEFNVNGKMSRLDEEDELGGMGFDEHQTIKLKEGQHVSA-EREREIQ 238

Query: 349 KLVKSVVQLEEMMVKMSEMINEQGETVDRIVLQVEEAHENVEEGNKQLNQAVDSHR 516
           +++ SV  L ++M  +S ++ +QG  VDRI   V+    +VEEG KQL +A  + R
Sbjct: 239 QVLGSVNDLAQIMKDLSALVIDQGTIVDRIDYNVQNVSTSVEEGYKQLQKAERTQR 294
>sp|O14662|STX16_HUMAN Syntaxin-16 (Syn16)
          Length = 324

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 27/74 (36%), Positives = 43/74 (58%)
 Frame = +1

Query: 280 EIQLSTIEDNQLKEALEEQQQCEKLVKSVVQLEEMMVKMSEMINEQGETVDRIVLQVEEA 459
           E QL  +E N L    E +++  ++V+S+  L E+   +  MI EQG  +DRI   VE++
Sbjct: 219 EDQLVLVEQNTLMVE-EREREIRQMVQSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQS 277

Query: 460 HENVEEGNKQLNQA 501
               E+G KQL++A
Sbjct: 278 CIKTEDGLKQLHKA 291
>sp|Q9SRV7|S131_ARATH Putative syntaxin 131 (AtSYP131)
          Length = 306

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 22/68 (32%), Positives = 38/68 (55%)
 Frame = +1

Query: 313 LKEALEEQQQCEKLVKSVVQLEEMMVKMSEMINEQGETVDRIVLQVEEAHENVEEGNKQL 492
           L E  E       L K ++ L+++ + M+ +++ QGE +D I   V  A ++V+ GN QL
Sbjct: 205 LAEIQERHDAVRDLEKKLLDLQQVFLDMAVLVDAQGEMLDNIENMVSSAVDHVQSGNNQL 264

Query: 493 NQAVDSHR 516
            +AV S +
Sbjct: 265 TKAVKSQK 272
>sp|P91409|STX4_CAEEL Putative syntaxin syn-4
          Length = 287

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 21/51 (41%), Positives = 30/51 (58%)
 Frame = +1

Query: 352 LVKSVVQLEEMMVKMSEMINEQGETVDRIVLQVEEAHENVEEGNKQLNQAV 504
           L K + ++EE+ V M  ++  QGETVDRI   V  A E  E+  + + QAV
Sbjct: 197 LEKQIREVEELFVDMQLLVQSQGETVDRIETSVIRAEEYAEQAQQNVRQAV 247
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,784,040
Number of Sequences: 369166
Number of extensions: 926933
Number of successful extensions: 3755
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3736
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8341863645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01073

  1. Dr_sW_013_C20
  2. Dr_sW_026_O06