DrC_01073
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_01073 (850 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|O15400|STX7_HUMAN Syntaxin-7 50 1e-05 sp|Q9SUJ1|SYP43_ARATH Syntaxin 43 (AtSYP43) 50 1e-05 sp|O65359|SY41_ARATH Syntaxin 41 (AtSYP41) (AtTLG2a) 49 2e-05 sp|O70439|STX7_MOUSE Syntaxin-7 49 2e-05 sp|Q9P6P1|TLG2_SCHPO t-SNARE affecting a late Golgi compart... 48 3e-05 sp|O70257|STX7_RAT Syntaxin-7 47 7e-05 sp|Q9SWH4|SY42_ARATH Syntaxin 42 (AtSYP42) (AtTLG2b) 46 1e-04 sp|O14662|STX16_HUMAN Syntaxin-16 (Syn16) 46 1e-04 sp|Q9SRV7|S131_ARATH Putative syntaxin 131 (AtSYP131) 45 3e-04 sp|P91409|STX4_CAEEL Putative syntaxin syn-4 43 0.001
>sp|O15400|STX7_HUMAN Syntaxin-7 Length = 261 Score = 49.7 bits (117), Expect = 1e-05 Identities = 46/210 (21%), Positives = 88/210 (41%), Gaps = 38/210 (18%) Frame = +1 Query: 1 QKLTESYVDITRNMDDLQRLIPTTNDHEHTAKKTQF-RQLSKRVENQMKHAQNLSS---- 165 QK+T+ V+I R ++ L + + +K Q+ QL+K + +K +L + Sbjct: 23 QKITQCSVEIQRTLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKYIKEFGSLPTTPSE 82 Query: 166 ----EIQK----------------------EMEKHYMNKKMAASVLSRNXXXXXXXXXXX 267 +IQK E EK ++ + A+S +S + Sbjct: 83 QRQRKIQKDRLVAEFTTSLTNFQKVQRQAAEREKEFVARVRASSRVSGSFPEDSSKERNL 142 Query: 268 XXXX-------EIQLSTIEDNQLKEALEEQQQCEKLVKSVVQLEEMMVKMSEMINEQGET 426 ++Q I ++ L+ E + +L ++ + E+ + MI+EQG+ Sbjct: 143 VSWESQTQPQVQVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDV 202 Query: 427 VDRIVLQVEEAHENVEEGNKQLNQAVDSHR 516 +D I VE A +V++ N+QL++A D R Sbjct: 203 IDSIEANVENAEVHVQQANQQLSRAADYQR 232
>sp|Q9SUJ1|SYP43_ARATH Syntaxin 43 (AtSYP43) Length = 331 Score = 49.7 bits (117), Expect = 1e-05 Identities = 40/170 (23%), Positives = 83/170 (48%), Gaps = 7/170 (4%) Frame = +1 Query: 28 ITRNMDDLQRLIPTTNDHEHTAKKTQFRQLSKRVENQMKHAQNLSSEIQKEMEKHY---- 195 + ++ LQRL + +K R L+ + QNLS E++K+ + Sbjct: 141 LKKSEKQLQRLSAAGPSEDSNVRKNVQRSLATDL-------QNLSMELRKKQSTYLKRLR 193 Query: 196 MNKKMAASV---LSRNXXXXXXXXXXXXXXXEIQLSTIEDNQLKEALEEQQQCEKLVKSV 366 + K+ A + L+ + E Q+S I+ ++ + ++E +++ +++V+SV Sbjct: 194 LQKEDGADLEMNLNGSRYKAEDDDFDDMVFSEHQMSKIKKSE-EISIEREKEIQQVVESV 252 Query: 367 VQLEEMMVKMSEMINEQGETVDRIVLQVEEAHENVEEGNKQLNQAVDSHR 516 +L ++M +S ++ +QG VDRI ++ V++G KQL +A + R Sbjct: 253 SELAQIMKDLSALVIDQGTIVDRIDYNIQNVASTVDDGLKQLQKAERTQR 302
>sp|O65359|SY41_ARATH Syntaxin 41 (AtSYP41) (AtTLG2a) Length = 322 Score = 48.9 bits (115), Expect = 2e-05 Identities = 39/163 (23%), Positives = 76/163 (46%) Frame = +1 Query: 28 ITRNMDDLQRLIPTTNDHEHTAKKTQFRQLSKRVENQMKHAQNLSSEIQKEMEKHYMNKK 207 + ++ LQRL + + +K R L+ ++ + S K + + + Sbjct: 133 LKKSEKQLQRLSASGPSEDSNVRKNVQRSLATDLQLLSMELRKKQSTYLKRLRQQKEDGM 192 Query: 208 MAASVLSRNXXXXXXXXXXXXXXXEIQLSTIEDNQLKEALEEQQQCEKLVKSVVQLEEMM 387 LSRN E Q+S I+ ++ + ++E +++ +++V+SV L ++M Sbjct: 193 DLEMNLSRNRYRPEEDDFGDMLN-EHQMSKIKKSE-EVSVEREKEIQQVVESVNDLAQIM 250 Query: 388 VKMSEMINEQGETVDRIVLQVEEAHENVEEGNKQLNQAVDSHR 516 +S ++ +QG VDRI +E VE+G KQL +A + R Sbjct: 251 KDLSALVIDQGTIVDRIDYNIENVATTVEDGLKQLQKAERTQR 293
>sp|O70439|STX7_MOUSE Syntaxin-7 Length = 261 Score = 48.5 bits (114), Expect = 2e-05 Identities = 23/79 (29%), Positives = 44/79 (55%) Frame = +1 Query: 280 EIQLSTIEDNQLKEALEEQQQCEKLVKSVVQLEEMMVKMSEMINEQGETVDRIVLQVEEA 459 ++Q I ++ L+ E + +L ++ + E+ + MI+EQG+ +D I VE A Sbjct: 154 QVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDMIDSIEANVESA 213 Query: 460 HENVEEGNKQLNQAVDSHR 516 +V++ N+QL++A D R Sbjct: 214 EVHVQQANQQLSRAADYQR 232
>sp|Q9P6P1|TLG2_SCHPO t-SNARE affecting a late Golgi compartment protein 2 (Syntaxin tlg2) Length = 301 Score = 48.1 bits (113), Expect = 3e-05 Identities = 41/179 (22%), Positives = 78/179 (43%), Gaps = 7/179 (3%) Frame = +1 Query: 1 QKLTESYVDITRNMDDLQRLIPTTNDHEHTAKKTQFRQLSKRVENQMKHAQNLSSEIQKE 180 Q+LT + IT++ Q+L+ T ++A ++ + N Q S++ +K+ Sbjct: 102 QRLT---IQITQDFQRCQKLLQVTKAQTNSATGSEALMAKNFLSNLASRIQTESAQFRKK 158 Query: 181 MEKHYMNKKMAASVLSRNXXXXXXXXXXXXXXXEIQLSTIEDNQLKEALEEQQQC----- 345 + KK+ L+ N I STI+ L E E +Q Sbjct: 159 QSTYL--KKLRG--LNANISPVESKLDETVSDVAISQSTIQQVALMEEQGEDEQAIRHER 214 Query: 346 --EKLVKSVVQLEEMMVKMSEMINEQGETVDRIVLQVEEAHENVEEGNKQLNQAVDSHR 516 K+ + +++L +M + ++ EQG VDRI +E+ + + K+L +A +SH+ Sbjct: 215 AVAKIAEGIIELAQMFQDLQVLVIEQGALVDRIDFNIEQTQVHAKSAEKELIKA-ESHQ 272
>sp|O70257|STX7_RAT Syntaxin-7 Length = 261 Score = 47.0 bits (110), Expect = 7e-05 Identities = 22/79 (27%), Positives = 44/79 (55%) Frame = +1 Query: 280 EIQLSTIEDNQLKEALEEQQQCEKLVKSVVQLEEMMVKMSEMINEQGETVDRIVLQVEEA 459 ++Q I ++ L+ E + +L ++ + E+ + MI+EQG+ +D I VE A Sbjct: 154 QVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESA 213 Query: 460 HENVEEGNKQLNQAVDSHR 516 +V++ N+QL++A + R Sbjct: 214 EVHVQQANQQLSRAANYQR 232
>sp|Q9SWH4|SY42_ARATH Syntaxin 42 (AtSYP42) (AtTLG2b) Length = 323 Score = 46.2 bits (108), Expect = 1e-04 Identities = 39/176 (22%), Positives = 78/176 (44%), Gaps = 4/176 (2%) Frame = +1 Query: 1 QKLTESYVDITRNMDDLQRLIPTTNDHEHT-AKKTQFRQLSKRVENQMKHAQNLSSEIQK 177 + LT D+ R + +++ T E + +K R L+ ++N + S K Sbjct: 120 EMLTHEITDLLRKSEKRLQMLSTRGPSEESNLRKNVQRSLATDLQNLSMELRRKQSTYLK 179 Query: 178 EMEKHYMNKK---MAASVLSRNXXXXXXXXXXXXXXXEIQLSTIEDNQLKEALEEQQQCE 348 +++ + + +V + E Q +++ Q A E +++ + Sbjct: 180 RLQQQKEGQDEVDLEFNVNGKMSRLDEEDELGGMGFDEHQTIKLKEGQHVSA-EREREIQ 238 Query: 349 KLVKSVVQLEEMMVKMSEMINEQGETVDRIVLQVEEAHENVEEGNKQLNQAVDSHR 516 +++ SV L ++M +S ++ +QG VDRI V+ +VEEG KQL +A + R Sbjct: 239 QVLGSVNDLAQIMKDLSALVIDQGTIVDRIDYNVQNVSTSVEEGYKQLQKAERTQR 294
>sp|O14662|STX16_HUMAN Syntaxin-16 (Syn16) Length = 324 Score = 45.8 bits (107), Expect = 1e-04 Identities = 27/74 (36%), Positives = 43/74 (58%) Frame = +1 Query: 280 EIQLSTIEDNQLKEALEEQQQCEKLVKSVVQLEEMMVKMSEMINEQGETVDRIVLQVEEA 459 E QL +E N L E +++ ++V+S+ L E+ + MI EQG +DRI VE++ Sbjct: 219 EDQLVLVEQNTLMVE-EREREIRQMVQSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQS 277 Query: 460 HENVEEGNKQLNQA 501 E+G KQL++A Sbjct: 278 CIKTEDGLKQLHKA 291
>sp|Q9SRV7|S131_ARATH Putative syntaxin 131 (AtSYP131) Length = 306 Score = 44.7 bits (104), Expect = 3e-04 Identities = 22/68 (32%), Positives = 38/68 (55%) Frame = +1 Query: 313 LKEALEEQQQCEKLVKSVVQLEEMMVKMSEMINEQGETVDRIVLQVEEAHENVEEGNKQL 492 L E E L K ++ L+++ + M+ +++ QGE +D I V A ++V+ GN QL Sbjct: 205 LAEIQERHDAVRDLEKKLLDLQQVFLDMAVLVDAQGEMLDNIENMVSSAVDHVQSGNNQL 264 Query: 493 NQAVDSHR 516 +AV S + Sbjct: 265 TKAVKSQK 272
>sp|P91409|STX4_CAEEL Putative syntaxin syn-4 Length = 287 Score = 42.7 bits (99), Expect = 0.001 Identities = 21/51 (41%), Positives = 30/51 (58%) Frame = +1 Query: 352 LVKSVVQLEEMMVKMSEMINEQGETVDRIVLQVEEAHENVEEGNKQLNQAV 504 L K + ++EE+ V M ++ QGETVDRI V A E E+ + + QAV Sbjct: 197 LEKQIREVEELFVDMQLLVQSQGETVDRIETSVIRAEEYAEQAQQNVRQAV 247
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,784,040
Number of Sequences: 369166
Number of extensions: 926933
Number of successful extensions: 3755
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3736
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8341863645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
