Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_C20
(180 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P50470|SPH_STRPY Immunoglobulin G binding protein H prec... 30 1.3
sp|P16947|M49_STRP9 M protein, serotype 49 precursor 30 1.3
sp|Q9Z7D1|HAM1_CHLPN HAM1 protein homolog 29 2.9
sp|P50468|M21_STRPY M protein, serotype 2.1 precursor 28 6.5
>sp|P50470|SPH_STRPY Immunoglobulin G binding protein H precursor (IgG binding protein
H)
Length = 376
Score = 30.4 bits (67), Expect = 1.3
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +1
Query: 13 DMDDLQRLIPTTNDHEHTAKKTQFRQLSERVENQMKHAQNLSSEIQKEMEKHYMNK 180
++D L++L DHEH + + ++ ER +NQ + L + Q+E+EK Y +
Sbjct: 102 ELDYLKKL-----DHEHKEHQKEQQEQEERQKNQ----EQLERKYQREVEKRYQEQ 148
>sp|P16947|M49_STRP9 M protein, serotype 49 precursor
Length = 389
Score = 30.4 bits (67), Expect = 1.3
Identities = 11/60 (18%), Positives = 31/60 (51%)
Frame = +1
Query: 1 QRERDMDDLQRLIPTTNDHEHTAKKTQFRQLSERVENQMKHAQNLSSEIQKEMEKHYMNK 180
+R+++++ L+ D + + + ++ + E + K+ + L + Q+E+EK Y +
Sbjct: 90 ERQKNLEKLEHQSQVAADKHYQEQAKKHQEYKQEQEERQKNQEQLERKYQREVEKRYQEQ 149
>sp|Q9Z7D1|HAM1_CHLPN HAM1 protein homolog
Length = 206
Score = 29.3 bits (64), Expect = 2.9
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Frame = +1
Query: 73 KTQFRQLSERVENQMKH----AQNLSSEIQKEMEKHYMNK 180
K F +LSE V+NQ+ H Q L+ +Q EKH + +
Sbjct: 166 KQTFAELSEDVKNQVSHRAKALQKLAPHLQSLFEKHLLTR 205
>sp|P50468|M21_STRPY M protein, serotype 2.1 precursor
Length = 407
Score = 28.1 bits (61), Expect = 6.5
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Frame = +1
Query: 52 DHEHTAKKTQ------FRQLSERVENQMKHAQNLSS---EIQKEMEKHYMNK 180
DHE KK++ RQL + + Q + +NL + Q+E+EK Y +
Sbjct: 95 DHEKLEKKSEDVERHYLRQLDQEYKEQQERQKNLEELERQSQREVEKRYQEQ 146
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.310 0.122 0.326
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,754,676
Number of Sequences: 369166
Number of extensions: 216328
Number of successful extensions: 1246
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 68,354,980
effective HSP length: 32
effective length of database: 62,443,460
effective search space used: 1685973420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)