Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_O06
(850 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O15400|STX7_HUMAN Syntaxin-7 50 1e-05
sp|Q9SUJ1|SYP43_ARATH Syntaxin 43 (AtSYP43) 50 1e-05
sp|O65359|SY41_ARATH Syntaxin 41 (AtSYP41) (AtTLG2a) 49 2e-05
sp|O70439|STX7_MOUSE Syntaxin-7 49 2e-05
sp|Q9P6P1|TLG2_SCHPO t-SNARE affecting a late Golgi compart... 48 3e-05
sp|O70257|STX7_RAT Syntaxin-7 47 7e-05
sp|Q9SWH4|SY42_ARATH Syntaxin 42 (AtSYP42) (AtTLG2b) 46 1e-04
sp|O14662|STX16_HUMAN Syntaxin-16 (Syn16) 46 1e-04
sp|Q9SRV7|S131_ARATH Putative syntaxin 131 (AtSYP131) 45 3e-04
sp|P91409|STX4_CAEEL Putative syntaxin syn-4 43 0.001
>sp|O15400|STX7_HUMAN Syntaxin-7
Length = 261
Score = 49.7 bits (117), Expect = 1e-05
Identities = 46/210 (21%), Positives = 88/210 (41%), Gaps = 38/210 (18%)
Frame = +1
Query: 1 QKLTESYVDITRNMDDLQRLIPTTNDHEHTAKKTQF-RQLSKRVENQMKHAQNLSS---- 165
QK+T+ V+I R ++ L + + +K Q+ QL+K + +K +L +
Sbjct: 23 QKITQCSVEIQRTLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKYIKEFGSLPTTPSE 82
Query: 166 ----EIQK----------------------EMEKHYMNKKMAASVLSRNXXXXXXXXXXX 267
+IQK E EK ++ + A+S +S +
Sbjct: 83 QRQRKIQKDRLVAEFTTSLTNFQKVQRQAAEREKEFVARVRASSRVSGSFPEDSSKERNL 142
Query: 268 XXXX-------EIQLSTIEDNQLKEALEEQQQCEKLVKSVVQLEEMMVKMSEMINEQGET 426
++Q I ++ L+ E + +L ++ + E+ + MI+EQG+
Sbjct: 143 VSWESQTQPQVQVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDV 202
Query: 427 VDRIVLQVEEAHENVEEGNKQLNQAVDSHR 516
+D I VE A +V++ N+QL++A D R
Sbjct: 203 IDSIEANVENAEVHVQQANQQLSRAADYQR 232
>sp|Q9SUJ1|SYP43_ARATH Syntaxin 43 (AtSYP43)
Length = 331
Score = 49.7 bits (117), Expect = 1e-05
Identities = 40/170 (23%), Positives = 83/170 (48%), Gaps = 7/170 (4%)
Frame = +1
Query: 28 ITRNMDDLQRLIPTTNDHEHTAKKTQFRQLSKRVENQMKHAQNLSSEIQKEMEKHY---- 195
+ ++ LQRL + +K R L+ + QNLS E++K+ +
Sbjct: 141 LKKSEKQLQRLSAAGPSEDSNVRKNVQRSLATDL-------QNLSMELRKKQSTYLKRLR 193
Query: 196 MNKKMAASV---LSRNXXXXXXXXXXXXXXXEIQLSTIEDNQLKEALEEQQQCEKLVKSV 366
+ K+ A + L+ + E Q+S I+ ++ + ++E +++ +++V+SV
Sbjct: 194 LQKEDGADLEMNLNGSRYKAEDDDFDDMVFSEHQMSKIKKSE-EISIEREKEIQQVVESV 252
Query: 367 VQLEEMMVKMSEMINEQGETVDRIVLQVEEAHENVEEGNKQLNQAVDSHR 516
+L ++M +S ++ +QG VDRI ++ V++G KQL +A + R
Sbjct: 253 SELAQIMKDLSALVIDQGTIVDRIDYNIQNVASTVDDGLKQLQKAERTQR 302
>sp|O65359|SY41_ARATH Syntaxin 41 (AtSYP41) (AtTLG2a)
Length = 322
Score = 48.9 bits (115), Expect = 2e-05
Identities = 39/163 (23%), Positives = 76/163 (46%)
Frame = +1
Query: 28 ITRNMDDLQRLIPTTNDHEHTAKKTQFRQLSKRVENQMKHAQNLSSEIQKEMEKHYMNKK 207
+ ++ LQRL + + +K R L+ ++ + S K + + +
Sbjct: 133 LKKSEKQLQRLSASGPSEDSNVRKNVQRSLATDLQLLSMELRKKQSTYLKRLRQQKEDGM 192
Query: 208 MAASVLSRNXXXXXXXXXXXXXXXEIQLSTIEDNQLKEALEEQQQCEKLVKSVVQLEEMM 387
LSRN E Q+S I+ ++ + ++E +++ +++V+SV L ++M
Sbjct: 193 DLEMNLSRNRYRPEEDDFGDMLN-EHQMSKIKKSE-EVSVEREKEIQQVVESVNDLAQIM 250
Query: 388 VKMSEMINEQGETVDRIVLQVEEAHENVEEGNKQLNQAVDSHR 516
+S ++ +QG VDRI +E VE+G KQL +A + R
Sbjct: 251 KDLSALVIDQGTIVDRIDYNIENVATTVEDGLKQLQKAERTQR 293
>sp|O70439|STX7_MOUSE Syntaxin-7
Length = 261
Score = 48.5 bits (114), Expect = 2e-05
Identities = 23/79 (29%), Positives = 44/79 (55%)
Frame = +1
Query: 280 EIQLSTIEDNQLKEALEEQQQCEKLVKSVVQLEEMMVKMSEMINEQGETVDRIVLQVEEA 459
++Q I ++ L+ E + +L ++ + E+ + MI+EQG+ +D I VE A
Sbjct: 154 QVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDMIDSIEANVESA 213
Query: 460 HENVEEGNKQLNQAVDSHR 516
+V++ N+QL++A D R
Sbjct: 214 EVHVQQANQQLSRAADYQR 232
>sp|Q9P6P1|TLG2_SCHPO t-SNARE affecting a late Golgi compartment protein 2 (Syntaxin
tlg2)
Length = 301
Score = 48.1 bits (113), Expect = 3e-05
Identities = 41/179 (22%), Positives = 78/179 (43%), Gaps = 7/179 (3%)
Frame = +1
Query: 1 QKLTESYVDITRNMDDLQRLIPTTNDHEHTAKKTQFRQLSKRVENQMKHAQNLSSEIQKE 180
Q+LT + IT++ Q+L+ T ++A ++ + N Q S++ +K+
Sbjct: 102 QRLT---IQITQDFQRCQKLLQVTKAQTNSATGSEALMAKNFLSNLASRIQTESAQFRKK 158
Query: 181 MEKHYMNKKMAASVLSRNXXXXXXXXXXXXXXXEIQLSTIEDNQLKEALEEQQQC----- 345
+ KK+ L+ N I STI+ L E E +Q
Sbjct: 159 QSTYL--KKLRG--LNANISPVESKLDETVSDVAISQSTIQQVALMEEQGEDEQAIRHER 214
Query: 346 --EKLVKSVVQLEEMMVKMSEMINEQGETVDRIVLQVEEAHENVEEGNKQLNQAVDSHR 516
K+ + +++L +M + ++ EQG VDRI +E+ + + K+L +A +SH+
Sbjct: 215 AVAKIAEGIIELAQMFQDLQVLVIEQGALVDRIDFNIEQTQVHAKSAEKELIKA-ESHQ 272
>sp|O70257|STX7_RAT Syntaxin-7
Length = 261
Score = 47.0 bits (110), Expect = 7e-05
Identities = 22/79 (27%), Positives = 44/79 (55%)
Frame = +1
Query: 280 EIQLSTIEDNQLKEALEEQQQCEKLVKSVVQLEEMMVKMSEMINEQGETVDRIVLQVEEA 459
++Q I ++ L+ E + +L ++ + E+ + MI+EQG+ +D I VE A
Sbjct: 154 QVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESA 213
Query: 460 HENVEEGNKQLNQAVDSHR 516
+V++ N+QL++A + R
Sbjct: 214 EVHVQQANQQLSRAANYQR 232
>sp|Q9SWH4|SY42_ARATH Syntaxin 42 (AtSYP42) (AtTLG2b)
Length = 323
Score = 46.2 bits (108), Expect = 1e-04
Identities = 39/176 (22%), Positives = 78/176 (44%), Gaps = 4/176 (2%)
Frame = +1
Query: 1 QKLTESYVDITRNMDDLQRLIPTTNDHEHT-AKKTQFRQLSKRVENQMKHAQNLSSEIQK 177
+ LT D+ R + +++ T E + +K R L+ ++N + S K
Sbjct: 120 EMLTHEITDLLRKSEKRLQMLSTRGPSEESNLRKNVQRSLATDLQNLSMELRRKQSTYLK 179
Query: 178 EMEKHYMNKK---MAASVLSRNXXXXXXXXXXXXXXXEIQLSTIEDNQLKEALEEQQQCE 348
+++ + + +V + E Q +++ Q A E +++ +
Sbjct: 180 RLQQQKEGQDEVDLEFNVNGKMSRLDEEDELGGMGFDEHQTIKLKEGQHVSA-EREREIQ 238
Query: 349 KLVKSVVQLEEMMVKMSEMINEQGETVDRIVLQVEEAHENVEEGNKQLNQAVDSHR 516
+++ SV L ++M +S ++ +QG VDRI V+ +VEEG KQL +A + R
Sbjct: 239 QVLGSVNDLAQIMKDLSALVIDQGTIVDRIDYNVQNVSTSVEEGYKQLQKAERTQR 294
>sp|O14662|STX16_HUMAN Syntaxin-16 (Syn16)
Length = 324
Score = 45.8 bits (107), Expect = 1e-04
Identities = 27/74 (36%), Positives = 43/74 (58%)
Frame = +1
Query: 280 EIQLSTIEDNQLKEALEEQQQCEKLVKSVVQLEEMMVKMSEMINEQGETVDRIVLQVEEA 459
E QL +E N L E +++ ++V+S+ L E+ + MI EQG +DRI VE++
Sbjct: 219 EDQLVLVEQNTLMVE-EREREIRQMVQSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQS 277
Query: 460 HENVEEGNKQLNQA 501
E+G KQL++A
Sbjct: 278 CIKTEDGLKQLHKA 291
>sp|Q9SRV7|S131_ARATH Putative syntaxin 131 (AtSYP131)
Length = 306
Score = 44.7 bits (104), Expect = 3e-04
Identities = 22/68 (32%), Positives = 38/68 (55%)
Frame = +1
Query: 313 LKEALEEQQQCEKLVKSVVQLEEMMVKMSEMINEQGETVDRIVLQVEEAHENVEEGNKQL 492
L E E L K ++ L+++ + M+ +++ QGE +D I V A ++V+ GN QL
Sbjct: 205 LAEIQERHDAVRDLEKKLLDLQQVFLDMAVLVDAQGEMLDNIENMVSSAVDHVQSGNNQL 264
Query: 493 NQAVDSHR 516
+AV S +
Sbjct: 265 TKAVKSQK 272
>sp|P91409|STX4_CAEEL Putative syntaxin syn-4
Length = 287
Score = 42.7 bits (99), Expect = 0.001
Identities = 21/51 (41%), Positives = 30/51 (58%)
Frame = +1
Query: 352 LVKSVVQLEEMMVKMSEMINEQGETVDRIVLQVEEAHENVEEGNKQLNQAV 504
L K + ++EE+ V M ++ QGETVDRI V A E E+ + + QAV
Sbjct: 197 LEKQIREVEELFVDMQLLVQSQGETVDRIETSVIRAEEYAEQAQQNVRQAV 247
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,784,040
Number of Sequences: 369166
Number of extensions: 926933
Number of successful extensions: 3755
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3736
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8341863645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)