Planaria EST Database

DrC_01052

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01052
         (701 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9QYI4|DNJBC_MOUSE  DnaJ homolog subfamily B member 12 (m...   115   9e-26
sp|Q9NXW2|DNJBC_HUMAN  DnaJ homolog subfamily B member 12         114   3e-25
sp|Q9FH28|DNJ49_ARATH  Chaperone protein dnaJ 49 (AtJ49) (At...    39   0.010
sp|Q9Y5E9|PCDBE_HUMAN  Protocadherin beta 14 precursor (PCDH...    31   2.8  
sp|Q5DRD5|PCDBE_PANTR  Protocadherin beta 14 precursor (PCDH...    31   2.8  
sp|P0A4K4|PMRA_STRPN  Multi-drug resistance efflux pump pmrA...    31   2.8  
sp|Q5DRD4|PCDBH_PANTR  Protocadherin beta 17 precursor (PCDH...    31   3.6  
sp|Q28107|FA5_BOVIN  Coagulation factor V precursor (Activat...    31   3.6  
sp|P09754|YCX2_CHLMO  Hypothetical 35.9 kDa protein in psbA ...    30   6.2  
sp|O05976|Y786_RICPR  Hypothetical protein RP786                   30   8.1  

>sp|Q9QYI4|DNJBC_MOUSE DnaJ homolog subfamily B member 12 (mDJ10)
          Length = 376

 Score =  115 bits (289), Expect = 9e-26
 Identities = 63/177 (35%), Positives = 95/177 (53%), Gaps = 11/177 (6%)
 Frame = +1

Query: 13  DCSRGFDSDFTAEELFNVFFGSGNLSGFXXXXXXXXXXXXPEQENSNY---------AWI 165
           D  RGF++D + E+LFN+FFG G  S               +Q               ++
Sbjct: 190 DFHRGFEADISPEDLFNMFFGGGFPSSNVHVYSNGRMRYTYQQRQDRRDNQGDGGLGVFV 249

Query: 166 QFLPLLFLFCMSLFSGFFVKDPYYQL--HKSEKYNNERITSNLNIPYFVKNTFEQDFGRQ 339
           Q +P+L L  +S  S   V  P Y L    S  + ++R+T +LN+ Y+V +TF +++   
Sbjct: 250 QLMPILILILVSALSQLMVSSPPYSLSPRPSVGHIHKRVTDHLNVAYYVADTFSEEYTGS 309

Query: 340 SIHQLDREVEADYINDLRYKCLHEKQQKESLIFRARYYGDEDNYQRYVQMVLPSCQK 510
           S+  ++R VE +YI +LR  C  EKQQKE L++RARY+GD D Y R  +M  PSC +
Sbjct: 310 SLKTVERNVEDEYIANLRNNCWKEKQQKEGLLYRARYFGDTDMYHRAQKMGTPSCNR 366

>sp|Q9NXW2|DNJBC_HUMAN DnaJ homolog subfamily B member 12
          Length = 375

 Score =  114 bits (284), Expect = 3e-25
 Identities = 63/177 (35%), Positives = 93/177 (52%), Gaps = 11/177 (6%)
 Frame = +1

Query: 13  DCSRGFDSDFTAEELFNVFFGSGNLSGFXXXXXXXXXXXXPEQENSNY---------AWI 165
           D  RGF++D + E+LFN+FFG G  S               +Q               ++
Sbjct: 189 DFHRGFEADISPEDLFNMFFGGGFPSSNVHVYSNGRMRYTYQQRQDRRDNQGDGGLGVFV 248

Query: 166 QFLPLLFLFCMSLFSGFFVKDPYYQL--HKSEKYNNERITSNLNIPYFVKNTFEQDFGRQ 339
           Q +P+L L  +S  S   V  P Y L    S  + + R+T +L + Y+V +TF +++   
Sbjct: 249 QLMPILILILVSALSQLMVSSPPYSLSPRPSVGHIHRRVTDHLGVVYYVGDTFSEEYTGS 308

Query: 340 SIHQLDREVEADYINDLRYKCLHEKQQKESLIFRARYYGDEDNYQRYVQMVLPSCQK 510
           S+  ++R VE DYI +LR  C  EKQQKE L++RARY+GD D Y R  +M  PSC +
Sbjct: 309 SLKTVERNVEDDYIANLRNNCWKEKQQKEGLLYRARYFGDTDMYHRAQKMGTPSCSR 365

>sp|Q9FH28|DNJ49_ARATH Chaperone protein dnaJ 49 (AtJ49) (AtDjC49)
          Length = 354

 Score = 39.3 bits (90), Expect = 0.010
 Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 8/140 (5%)
 Frame = +1

Query: 28  FDSDFTAEELFNVFFGSG----NLSGFXXXXXXXXXXXXPEQENSNYAWIQFLPLLFLFC 195
           FD +F  EE+F   FG        S               E   +  + +  + +L  F 
Sbjct: 189 FDDEFDPEEIFRTVFGQQREVFRASHAYRTRQPRNQFREEEINVAGPSCLTIIQILPFFL 248

Query: 196 MSLFSGFFVKDPYYQLHKSEKYNNERITSNLNIPYFVK--NTFEQDFGRQSIHQ--LDRE 363
           + L +     +P Y LHK++ Y   + T N  I ++V+  + F++ F   S  +  L+  
Sbjct: 249 LLLLAYLPFSEPDYSLHKNQSYQIPKTTQNTEISFYVRSASAFDEKFPLSSSARANLEGN 308

Query: 364 VEADYINDLRYKCLHEKQQK 423
           V  +Y + L   C  E Q++
Sbjct: 309 VIKEYKHFLFQSCRIELQKR 328

>sp|Q9Y5E9|PCDBE_HUMAN Protocadherin beta 14 precursor (PCDH-beta14)
          Length = 798

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 289 NIPYFVKNTFEQDFGRQSIHQLDREVEADY 378
           N+P+F+K TF+  F   S   LDRE +A+Y
Sbjct: 388 NLPFFLKPTFKNFFTLVSEKALDRESQAEY 417

>sp|Q5DRD5|PCDBE_PANTR Protocadherin beta 14 precursor (PCDH-beta14)
          Length = 798

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 289 NIPYFVKNTFEQDFGRQSIHQLDREVEADY 378
           N+P+F+K TF+  F   S   LDRE +A+Y
Sbjct: 388 NLPFFLKPTFKNFFTLVSEKALDRESQAEY 417

>sp|P0A4K4|PMRA_STRPN Multi-drug resistance efflux pump pmrA
 sp|P0A4K5|PMRA_STRR6 Multi-drug resistance efflux pump pmrA
          Length = 399

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 21/85 (24%), Positives = 39/85 (45%)
 Frame = +1

Query: 184 FLFCMSLFSGFFVKDPYYQLHKSEKYNNERITSNLNIPYFVKNTFEQDFGRQSIHQLDRE 363
           FLF  ++ +  F+K+ +  + K +    + + +++  PY + N F   F  Q   Q    
Sbjct: 174 FLFLAAILTICFIKEDFQPVAKEKAIPTKELFTSVKYPYLLLNLFLTSFVIQFSAQSIGP 233

Query: 364 VEADYINDLRYKCLHEKQQKESLIF 438
           + A Y+ DL         Q E+L+F
Sbjct: 234 ILALYVRDL--------GQTENLLF 250

>sp|Q5DRD4|PCDBH_PANTR Protocadherin beta 17 precursor (PCDH-beta17)
          Length = 788

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +1

Query: 235 YQLHKSEKYNNERITSNL--NIPYFVKNTFEQDFGRQSIHQLDREVEADY 378
           + +   +  +N R+  ++  N+P+ +K TF+  +   + H LDREV  +Y
Sbjct: 369 FSIRDQDAGDNGRMVGSIQDNLPFVLKPTFKNFYALVTEHPLDREVRNEY 418

>sp|Q28107|FA5_BOVIN Coagulation factor V precursor (Activated protein C cofactor)
            [Contains: Coagulation factor V heavy chain; Coagulation
            factor V light chain]
          Length = 2211

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 309  LDKIRNIEVACDPFIVVFLGFVQLIIWIFDKEPTK 205
            LDK  N+ V    F+++F+ F +   W +DK+PT+
Sbjct: 1743 LDKETNMPVDMREFVLLFMVFDEKKSWYYDKKPTR 1777

>sp|P09754|YCX2_CHLMO Hypothetical 35.9 kDa protein in psbA intron 2
          Length = 312

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 273 DHKQPQYSLFCQEHIRARFRSSID 344
           D   PQY+LFC  HI  +F    D
Sbjct: 24  DRNSPQYNLFCSHHINPKFNKGGD 47

>sp|O05976|Y786_RICPR Hypothetical protein RP786
          Length = 297

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 80  VIYQDSQLALLVIELLIAQNKRTQIMRGFNFCLSSFYFVCPCLVG 214
           +I+     ALL+++L I   K   I    +  LS FYF+  CL G
Sbjct: 4   IIFYTIIAALLILDLGIIHKKNKVISFKGSILLSLFYFIISCLFG 48

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,087,590
Number of Sequences: 369166
Number of extensions: 1179416
Number of successful extensions: 3923
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3920
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6122130210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01052

  1. Dr_sW_026_J06
  2. Dr_sW_020_P04