Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_P04
(418 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9NXW2|DNJBC_HUMAN DnaJ homolog subfamily B member 12 76 3e-14
sp|Q9QYI4|DNJBC_MOUSE DnaJ homolog subfamily B member 12 (m... 75 7e-14
sp|Q9Y5E9|PCDBE_HUMAN Protocadherin beta 14 precursor (PCDH... 28 7.5
sp|Q5DRD5|PCDBE_PANTR Protocadherin beta 14 precursor (PCDH... 28 7.5
sp|P19965|SP15_TORCA SITS-binding protein (SP105) 28 9.8
sp|P21161|DCMA_METDI Dichloromethane dehalogenase (DCM deha... 28 9.8
>sp|Q9NXW2|DNJBC_HUMAN DnaJ homolog subfamily B member 12
Length = 375
Score = 75.9 bits (185), Expect = 3e-14
Identities = 34/71 (47%), Positives = 48/71 (67%)
Frame = +3
Query: 15 YFVKNTFEQDFGRQSIHQLDREVEADYINDLRYKCLHEKQQKESLIFRARYYGDEDNYQR 194
Y+V +TF +++ S+ ++R VE DYI +LR C EKQQKE L++RARY+GD D Y R
Sbjct: 295 YYVGDTFSEEYTGSSLKTVERNVEDDYIANLRNNCWKEKQQKEGLLYRARYFGDTDMYHR 354
Query: 195 YVQMVLPSCQK 227
+M PSC +
Sbjct: 355 AQKMGTPSCSR 365
>sp|Q9QYI4|DNJBC_MOUSE DnaJ homolog subfamily B member 12 (mDJ10)
Length = 376
Score = 74.7 bits (182), Expect = 7e-14
Identities = 33/71 (46%), Positives = 48/71 (67%)
Frame = +3
Query: 15 YFVKNTFEQDFGRQSIHQLDREVEADYINDLRYKCLHEKQQKESLIFRARYYGDEDNYQR 194
Y+V +TF +++ S+ ++R VE +YI +LR C EKQQKE L++RARY+GD D Y R
Sbjct: 296 YYVADTFSEEYTGSSLKTVERNVEDEYIANLRNNCWKEKQQKEGLLYRARYFGDTDMYHR 355
Query: 195 YVQMVLPSCQK 227
+M PSC +
Sbjct: 356 AQKMGTPSCNR 366
>sp|Q9Y5E9|PCDBE_HUMAN Protocadherin beta 14 precursor (PCDH-beta14)
Length = 798
Score = 28.1 bits (61), Expect = 7.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 12 PYFVKNTFEQDFGRQSIHQLDREVEADY 95
P+F+K TF+ F S LDRE +A+Y
Sbjct: 390 PFFLKPTFKNFFTLVSEKALDRESQAEY 417
>sp|Q5DRD5|PCDBE_PANTR Protocadherin beta 14 precursor (PCDH-beta14)
Length = 798
Score = 28.1 bits (61), Expect = 7.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 12 PYFVKNTFEQDFGRQSIHQLDREVEADY 95
P+F+K TF+ F S LDRE +A+Y
Sbjct: 390 PFFLKPTFKNFFTLVSEKALDRESQAEY 417
>sp|P19965|SP15_TORCA SITS-binding protein (SP105)
Length = 697
Score = 27.7 bits (60), Expect = 9.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 21 VKNTFEQDFGRQSIHQLDREVEADYIN 101
+ N QD+ + +H L R +E DY+N
Sbjct: 406 ISNEEAQDWFIEQVHSLQRRLEVDYVN 432
>sp|P21161|DCMA_METDI Dichloromethane dehalogenase (DCM dehalogenase)
Length = 288
Score = 27.7 bits (60), Expect = 9.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 3 GTRPYFVKNTFEQDFGRQSIHQLDREVEADYINDLRYKC 119
G +PY K T EQ+ GR +++ +E ++ D Y C
Sbjct: 136 GEKPYSPKFTAEQNKGRTLLYEAMGTLENYWLRDREYVC 174
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,231,632
Number of Sequences: 369166
Number of extensions: 539962
Number of successful extensions: 1233
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1952582385
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)