Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_J06
(698 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9QYI4|DNJBC_MOUSE DnaJ homolog subfamily B member 12 (m... 115 9e-26
sp|Q9NXW2|DNJBC_HUMAN DnaJ homolog subfamily B member 12 114 3e-25
sp|Q9FH28|DNJ49_ARATH Chaperone protein dnaJ 49 (AtJ49) (At... 39 0.010
sp|Q9Y5E9|PCDBE_HUMAN Protocadherin beta 14 precursor (PCDH... 31 2.8
sp|Q5DRD5|PCDBE_PANTR Protocadherin beta 14 precursor (PCDH... 31 2.8
sp|P0A4K4|PMRA_STRPN Multi-drug resistance efflux pump pmrA... 31 2.8
sp|Q5DRD4|PCDBH_PANTR Protocadherin beta 17 precursor (PCDH... 31 3.6
sp|Q28107|FA5_BOVIN Coagulation factor V precursor (Activat... 31 3.6
sp|P09754|YCX2_CHLMO Hypothetical 35.9 kDa protein in psbA ... 30 6.1
sp|O05976|Y786_RICPR Hypothetical protein RP786 30 8.0
>sp|Q9QYI4|DNJBC_MOUSE DnaJ homolog subfamily B member 12 (mDJ10)
Length = 376
Score = 115 bits (289), Expect = 9e-26
Identities = 63/177 (35%), Positives = 95/177 (53%), Gaps = 11/177 (6%)
Frame = -1
Query: 686 DCSRGFDSDFTAEELFNVFFGSGNLSGFXXXXXXXXXXXRPEQENSNY---------AWI 534
D RGF++D + E+LFN+FFG G S +Q ++
Sbjct: 190 DFHRGFEADISPEDLFNMFFGGGFPSSNVHVYSNGRMRYTYQQRQDRRDNQGDGGLGVFV 249
Query: 533 QFLPLLFLFCMSLFSGFFVKDPYYQL--HKSEKYNNERITSNLNIPYFVKNTFEQDFGRQ 360
Q +P+L L +S S V P Y L S + ++R+T +LN+ Y+V +TF +++
Sbjct: 250 QLMPILILILVSALSQLMVSSPPYSLSPRPSVGHIHKRVTDHLNVAYYVADTFSEEYTGS 309
Query: 359 SIHQLDREVEADYINDLRYKCLHEKQQKESLIFRARYYGDEDNYQRYVQMVLPSCQK 189
S+ ++R VE +YI +LR C EKQQKE L++RARY+GD D Y R +M PSC +
Sbjct: 310 SLKTVERNVEDEYIANLRNNCWKEKQQKEGLLYRARYFGDTDMYHRAQKMGTPSCNR 366
>sp|Q9NXW2|DNJBC_HUMAN DnaJ homolog subfamily B member 12
Length = 375
Score = 114 bits (284), Expect = 3e-25
Identities = 63/177 (35%), Positives = 93/177 (52%), Gaps = 11/177 (6%)
Frame = -1
Query: 686 DCSRGFDSDFTAEELFNVFFGSGNLSGFXXXXXXXXXXXRPEQENSNY---------AWI 534
D RGF++D + E+LFN+FFG G S +Q ++
Sbjct: 189 DFHRGFEADISPEDLFNMFFGGGFPSSNVHVYSNGRMRYTYQQRQDRRDNQGDGGLGVFV 248
Query: 533 QFLPLLFLFCMSLFSGFFVKDPYYQL--HKSEKYNNERITSNLNIPYFVKNTFEQDFGRQ 360
Q +P+L L +S S V P Y L S + + R+T +L + Y+V +TF +++
Sbjct: 249 QLMPILILILVSALSQLMVSSPPYSLSPRPSVGHIHRRVTDHLGVVYYVGDTFSEEYTGS 308
Query: 359 SIHQLDREVEADYINDLRYKCLHEKQQKESLIFRARYYGDEDNYQRYVQMVLPSCQK 189
S+ ++R VE DYI +LR C EKQQKE L++RARY+GD D Y R +M PSC +
Sbjct: 309 SLKTVERNVEDDYIANLRNNCWKEKQQKEGLLYRARYFGDTDMYHRAQKMGTPSCSR 365
>sp|Q9FH28|DNJ49_ARATH Chaperone protein dnaJ 49 (AtJ49) (AtDjC49)
Length = 354
Score = 39.3 bits (90), Expect = 0.010
Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 8/140 (5%)
Frame = -1
Query: 671 FDSDFTAEELFNVFFGSG----NLSGFXXXXXXXXXXXRPEQENSNYAWIQFLPLLFLFC 504
FD +F EE+F FG S E + + + + +L F
Sbjct: 189 FDDEFDPEEIFRTVFGQQREVFRASHAYRTRQPRNQFREEEINVAGPSCLTIIQILPFFL 248
Query: 503 MSLFSGFFVKDPYYQLHKSEKYNNERITSNLNIPYFVK--NTFEQDFGRQSIHQ--LDRE 336
+ L + +P Y LHK++ Y + T N I ++V+ + F++ F S + L+
Sbjct: 249 LLLLAYLPFSEPDYSLHKNQSYQIPKTTQNTEISFYVRSASAFDEKFPLSSSARANLEGN 308
Query: 335 VEADYINDLRYKCLHEKQQK 276
V +Y + L C E Q++
Sbjct: 309 VIKEYKHFLFQSCRIELQKR 328
>sp|Q9Y5E9|PCDBE_HUMAN Protocadherin beta 14 precursor (PCDH-beta14)
Length = 798
Score = 31.2 bits (69), Expect = 2.8
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -1
Query: 410 NIPYFVKNTFEQDFGRQSIHQLDREVEADY 321
N+P+F+K TF+ F S LDRE +A+Y
Sbjct: 388 NLPFFLKPTFKNFFTLVSEKALDRESQAEY 417
>sp|Q5DRD5|PCDBE_PANTR Protocadherin beta 14 precursor (PCDH-beta14)
Length = 798
Score = 31.2 bits (69), Expect = 2.8
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -1
Query: 410 NIPYFVKNTFEQDFGRQSIHQLDREVEADY 321
N+P+F+K TF+ F S LDRE +A+Y
Sbjct: 388 NLPFFLKPTFKNFFTLVSEKALDRESQAEY 417
>sp|P0A4K4|PMRA_STRPN Multi-drug resistance efflux pump pmrA
sp|P0A4K5|PMRA_STRR6 Multi-drug resistance efflux pump pmrA
Length = 399
Score = 31.2 bits (69), Expect = 2.8
Identities = 21/85 (24%), Positives = 39/85 (45%)
Frame = -1
Query: 515 FLFCMSLFSGFFVKDPYYQLHKSEKYNNERITSNLNIPYFVKNTFEQDFGRQSIHQLDRE 336
FLF ++ + F+K+ + + K + + + +++ PY + N F F Q Q
Sbjct: 174 FLFLAAILTICFIKEDFQPVAKEKAIPTKELFTSVKYPYLLLNLFLTSFVIQFSAQSIGP 233
Query: 335 VEADYINDLRYKCLHEKQQKESLIF 261
+ A Y+ DL Q E+L+F
Sbjct: 234 ILALYVRDL--------GQTENLLF 250
>sp|Q5DRD4|PCDBH_PANTR Protocadherin beta 17 precursor (PCDH-beta17)
Length = 788
Score = 30.8 bits (68), Expect = 3.6
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = -1
Query: 464 YQLHKSEKYNNERITSNL--NIPYFVKNTFEQDFGRQSIHQLDREVEADY 321
+ + + +N R+ ++ N+P+ +K TF+ + + H LDREV +Y
Sbjct: 369 FSIRDQDAGDNGRMVGSIQDNLPFVLKPTFKNFYALVTEHPLDREVRNEY 418
>sp|Q28107|FA5_BOVIN Coagulation factor V precursor (Activated protein C cofactor)
[Contains: Coagulation factor V heavy chain; Coagulation
factor V light chain]
Length = 2211
Score = 30.8 bits (68), Expect = 3.6
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 390 LDKIRNIEVACDPFIVVFLGFVQLIIWIFDKEPTK 494
LDK N+ V F+++F+ F + W +DK+PT+
Sbjct: 1743 LDKETNMPVDMREFVLLFMVFDEKKSWYYDKKPTR 1777
>sp|P09754|YCX2_CHLMO Hypothetical 35.9 kDa protein in psbA intron 2
Length = 312
Score = 30.0 bits (66), Expect = 6.1
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -3
Query: 426 DHKQPQYSLFCQEHIRARFRSSID 355
D PQY+LFC HI +F D
Sbjct: 24 DRNSPQYNLFCSHHINPKFNKGGD 47
>sp|O05976|Y786_RICPR Hypothetical protein RP786
Length = 297
Score = 29.6 bits (65), Expect = 8.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 619 VIYQDSQLALLVIELLIAQNKRTQIMRGFNFCLSSFYFVCPCLVG 485
+I+ ALL+++L I K I + LS FYF+ CL G
Sbjct: 4 IIFYTIIAALLILDLGIIHKKNKVISFKGSILLSLFYFIISCLFG 48
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,743,371
Number of Sequences: 369166
Number of extensions: 1173300
Number of successful extensions: 3905
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3902
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6073541875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)