Planaria EST Database

DrC_01051

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01051
         (739 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O75494|FUSIP_HUMAN  FUS-interacting serine-arginine-rich ...    49   1e-05
sp|Q8WXF0|SRR35_HUMAN  35 kDa SR repressor protein (SRrp35)        47   4e-05
sp|Q9NEW6|RSP3_CAEEL  Probable splicing factor, arginine/ser...    38   0.025
sp|P84103|SFRS3_HUMAN  Splicing factor, arginine/serine-rich...    37   0.072
sp|Q02427|RBP1_DROME  RNA-binding protein 1                        35   0.16 
sp|P26686|SRR55_DROME  Serine-arginine protein 55 (SRP55) (E...    35   0.16 
sp|P30352|SFRS2_CHICK  Splicing factor, arginine/serine-rich...    34   0.46 
sp|Q6PDU1|SFRS2_RAT  Splicing factor, arginine/serine-rich 2...    34   0.46 
sp|Q5R1W5|SFRS2_PANTR  Splicing factor, arginine/serine-rich...    34   0.46 
sp|Q18409|RSP6_CAEEL  Probable splicing factor, arginine/ser...    33   0.79 

>sp|O75494|FUSIP_HUMAN FUS-interacting serine-arginine-rich protein 1 (TLS-associated
           protein with Ser-Arg repeats) (TLS-associated protein
           with SR repeats) (TASR) (TLS-associated serine-arginine
           protein) (TLS-associated SR protein) (40 kDa
           SR-repressor protein) (SRrp40) (Splicing factor SRp38)
 sp|Q9R0U0|FUSIP_MOUSE FUS-interacting serine-arginine-rich protein 1 (TLS-associated
           protein with Ser-Arg repeats) (TLS-associated protein
           with SR repeats) (TASR) (TLS-associated serine-arginine
           protein) (TLS-associated SR protein) (Neural-specific SR
           protein) (Neural-salient serine/arginine-rich protein)
          Length = 262

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 23/46 (50%), Positives = 30/46 (65%)
 Frame = +2

Query: 374 FEDFRDAEDAKSRLDGAQLLGREIGVEFTNGYKKTPAEMRDKEKTN 511
           FED RDAEDA   LD   + GR+I ++F  G +KTP +M+ KE  N
Sbjct: 58  FEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRN 103

>sp|Q8WXF0|SRR35_HUMAN 35 kDa SR repressor protein (SRrp35)
          Length = 261

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 21/44 (47%), Positives = 30/44 (68%)
 Frame = +2

Query: 374 FEDFRDAEDAKSRLDGAQLLGREIGVEFTNGYKKTPAEMRDKEK 505
           FED RDAEDA   L+   + GR+I ++F  G +KTP +M+ KE+
Sbjct: 58  FEDVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKER 101

>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3 (CeSF2)
           (CeSF2/ASF)
          Length = 258

 Score = 38.1 bits (87), Expect = 0.025
 Identities = 19/31 (61%), Positives = 20/31 (64%)
 Frame = +2

Query: 374 FEDFRDAEDAKSRLDGAQLLGREIGVEFTNG 466
           FED RDAEDA    DG +  GR I VEFT G
Sbjct: 53  FEDHRDAEDAVRARDGYEFDGRRIRVEFTRG 83

>sp|P84103|SFRS3_HUMAN Splicing factor, arginine/serine-rich 3 (Pre-mRNA splicing factor
           SRP20)
 sp|P84104|SFRS3_MOUSE Splicing factor, arginine/serine-rich 3 (Pre-mRNA splicing factor
           SRP20) (X16 protein)
          Length = 164

 Score = 36.6 bits (83), Expect = 0.072
 Identities = 18/35 (51%), Positives = 22/35 (62%)
 Frame = +2

Query: 374 FEDFRDAEDAKSRLDGAQLLGREIGVEFTNGYKKT 478
           FED RDA DA   LDG  L G  + VE +NG K++
Sbjct: 53  FEDPRDAADAVRELDGRTLCGCRVRVELSNGEKRS 87

>sp|Q02427|RBP1_DROME RNA-binding protein 1
          Length = 144

 Score = 35.4 bits (80), Expect = 0.16
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +2

Query: 374 FEDFRDAEDAKSRLDGAQLLGREIGVEFTNG 466
           FED RDAEDA   LDG +  G  I VE ++G
Sbjct: 54  FEDRRDAEDATRALDGTRCCGTRIRVEMSSG 84

>sp|P26686|SRR55_DROME Serine-arginine protein 55 (SRP55) (Enhancer of deformed) (52-kDa
           bracketing protein) (B52 protein)
          Length = 376

 Score = 35.4 bits (80), Expect = 0.16
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = +2

Query: 374 FEDFRDAEDAKSRLDGAQLLGREIGVEFTNG 466
           FED+RDA+DA   L+G +LLG  + VE   G
Sbjct: 44  FEDYRDADDAVYELNGKELLGERVVVEPARG 74

>sp|P30352|SFRS2_CHICK Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
           (SC-35) (Splicing component, 35 kDa) (PR264 protein)
          Length = 221

 Score = 33.9 bits (76), Expect = 0.46
 Identities = 18/36 (50%), Positives = 22/36 (61%)
 Frame = +2

Query: 374 FEDFRDAEDAKSRLDGAQLLGREIGVEFTNGYKKTP 481
           F D RDAEDA   +DGA L GRE+ V+    Y + P
Sbjct: 62  FHDKRDAEDAMDAMDGAVLDGRELRVQMAR-YGRPP 96

>sp|Q6PDU1|SFRS2_RAT Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
           (SC-35) (Splicing component, 35 kDa)
 sp|Q62093|SFRS2_MOUSE Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
           (SC-35) (Splicing component, 35 kDa) (PR264 protein)
 sp|Q01130|SFRS2_HUMAN Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
           (SC-35) (Splicing component, 35 kDa) (PR264 protein)
          Length = 221

 Score = 33.9 bits (76), Expect = 0.46
 Identities = 18/36 (50%), Positives = 22/36 (61%)
 Frame = +2

Query: 374 FEDFRDAEDAKSRLDGAQLLGREIGVEFTNGYKKTP 481
           F D RDAEDA   +DGA L GRE+ V+    Y + P
Sbjct: 62  FHDKRDAEDAMDAMDGAVLDGRELRVQMAR-YGRPP 96

>sp|Q5R1W5|SFRS2_PANTR Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
           (SC-35) (Splicing component, 35 kDa)
          Length = 221

 Score = 33.9 bits (76), Expect = 0.46
 Identities = 18/36 (50%), Positives = 22/36 (61%)
 Frame = +2

Query: 374 FEDFRDAEDAKSRLDGAQLLGREIGVEFTNGYKKTP 481
           F D RDAEDA   +DGA L GRE+ V+    Y + P
Sbjct: 62  FHDKRDAEDAMDAMDGAVLDGRELRVQMAR-YGRPP 96

>sp|Q18409|RSP6_CAEEL Probable splicing factor, arginine/serine-rich 6 (RNA-binding
           protein srp-1) (CeSRp20)
          Length = 179

 Score = 33.1 bits (74), Expect = 0.79
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +2

Query: 374 FEDFRDAEDAKSRLDGAQLLGREIGVEFTNGYKK 475
           ++D RDAEDA   LDG+++ G    VE + G ++
Sbjct: 46  YDDVRDAEDAVRALDGSRICGVRARVELSTGQRR 79

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,555,795
Number of Sequences: 369166
Number of extensions: 1142831
Number of successful extensions: 2366
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2366
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6631293200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01051

  1. Dr_sW_026_J05
  2. Dr_sW_008_C14