Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_C14
(483 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O75494|FUSIP_HUMAN FUS-interacting serine-arginine-rich ... 88 1e-17
sp|Q8WXF0|SRR35_HUMAN 35 kDa SR repressor protein (SRrp35) 87 3e-17
sp|P30352|SFRS2_CHICK Splicing factor, arginine/serine-rich... 64 1e-10
sp|Q6PDU1|SFRS2_RAT Splicing factor, arginine/serine-rich 2... 64 1e-10
sp|Q5R1W5|SFRS2_PANTR Splicing factor, arginine/serine-rich... 64 1e-10
sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/ser... 62 9e-10
sp|P62997|TRA2B_RAT Arginine/serine-rich splicing factor 10... 59 8e-09
sp|Q09511|RSP4_CAEEL Probable splicing factor, arginine/ser... 59 8e-09
sp|Q57014|RBPA_SYNY3 Putative RNA-binding protein rbpA 56 5e-08
sp|P26686|SRR55_DROME Serine-arginine protein 55 (SRP55) (E... 55 6e-08
>sp|O75494|FUSIP_HUMAN FUS-interacting serine-arginine-rich protein 1 (TLS-associated
protein with Ser-Arg repeats) (TLS-associated protein
with SR repeats) (TASR) (TLS-associated serine-arginine
protein) (TLS-associated SR protein) (40 kDa
SR-repressor protein) (SRrp40) (Splicing factor SRp38)
sp|Q9R0U0|FUSIP_MOUSE FUS-interacting serine-arginine-rich protein 1 (TLS-associated
protein with Ser-Arg repeats) (TLS-associated protein
with SR repeats) (TASR) (TLS-associated serine-arginine
protein) (TLS-associated SR protein) (Neural-specific SR
protein) (Neural-salient serine/arginine-rich protein)
Length = 262
Score = 87.8 bits (216), Expect = 1e-17
Identities = 40/85 (47%), Positives = 58/85 (68%)
Frame = +1
Query: 1 DRVKYEDLDKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKSRLDGAQLLG 180
D + EDL + FG+YG I ++ +PLD+Y+ R +GF +V+FED RDAEDA LD + G
Sbjct: 19 DDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICG 78
Query: 181 REIGVEFTNGYKKTPAEMRDKEKTN 255
R+I ++F G +KTP +M+ KE N
Sbjct: 79 RQIEIQFAQGDRKTPNQMKAKEGRN 103
>sp|Q8WXF0|SRR35_HUMAN 35 kDa SR repressor protein (SRrp35)
Length = 261
Score = 86.7 bits (213), Expect = 3e-17
Identities = 39/83 (46%), Positives = 58/83 (69%)
Frame = +1
Query: 1 DRVKYEDLDKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKSRLDGAQLLG 180
D + EDL + FG+YG I ++ IPLD+Y+ R +GF +V+FED RDAEDA L+ + G
Sbjct: 19 DATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCG 78
Query: 181 REIGVEFTNGYKKTPAEMRDKEK 249
R+I ++F G +KTP +M+ KE+
Sbjct: 79 RQIEIQFAQGDRKTPGQMKSKER 101
>sp|P30352|SFRS2_CHICK Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
(SC-35) (Splicing component, 35 kDa) (PR264 protein)
Length = 221
Score = 64.3 bits (155), Expect = 1e-10
Identities = 33/74 (44%), Positives = 45/74 (60%)
Frame = +1
Query: 4 RVKYEDLDKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKSRLDGAQLLGR 183
R + L ++F KYGR+ ++ IP D Y+ +GF FV F D RDAEDA +DGA L GR
Sbjct: 24 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 83
Query: 184 EIGVEFTNGYKKTP 225
E+ V+ Y + P
Sbjct: 84 ELRVQMAR-YGRPP 96
>sp|Q6PDU1|SFRS2_RAT Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
(SC-35) (Splicing component, 35 kDa)
sp|Q62093|SFRS2_MOUSE Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
(SC-35) (Splicing component, 35 kDa) (PR264 protein)
sp|Q01130|SFRS2_HUMAN Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
(SC-35) (Splicing component, 35 kDa) (PR264 protein)
Length = 221
Score = 64.3 bits (155), Expect = 1e-10
Identities = 33/74 (44%), Positives = 45/74 (60%)
Frame = +1
Query: 4 RVKYEDLDKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKSRLDGAQLLGR 183
R + L ++F KYGR+ ++ IP D Y+ +GF FV F D RDAEDA +DGA L GR
Sbjct: 24 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 83
Query: 184 EIGVEFTNGYKKTP 225
E+ V+ Y + P
Sbjct: 84 ELRVQMAR-YGRPP 96
>sp|Q5R1W5|SFRS2_PANTR Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
(SC-35) (Splicing component, 35 kDa)
Length = 221
Score = 64.3 bits (155), Expect = 1e-10
Identities = 33/74 (44%), Positives = 45/74 (60%)
Frame = +1
Query: 4 RVKYEDLDKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKSRLDGAQLLGR 183
R + L ++F KYGR+ ++ IP D Y+ +GF FV F D RDAEDA +DGA L GR
Sbjct: 24 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 83
Query: 184 EIGVEFTNGYKKTP 225
E+ V+ Y + P
Sbjct: 84 ELRVQMAR-YGRPP 96
>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3 (CeSF2)
(CeSF2/ASF)
Length = 258
Score = 61.6 bits (148), Expect = 9e-10
Identities = 34/68 (50%), Positives = 42/68 (61%)
Frame = +1
Query: 7 VKYEDLDKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKSRLDGAQLLGRE 186
V+ ++++ +F KYGRI + D SGR F FVEFED RDAEDA DG + GR
Sbjct: 20 VREKEVEDIFHKYGRIKYV----DIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRR 75
Query: 187 IGVEFTNG 210
I VEFT G
Sbjct: 76 IRVEFTRG 83
>sp|P62997|TRA2B_RAT Arginine/serine-rich splicing factor 10 (Transformer-2-beta)
(HTRA2-beta) (Transformer 2 protein homolog) (RA301)
sp|P62996|TRA2B_MOUSE Arginine/serine-rich splicing factor 10 (Transformer-2-beta)
(HTRA2-beta) (Transformer 2 protein homolog)
(Silica-induced gene 41 protein) (SIG-41)
sp|P62995|TRA2B_HUMAN Arginine/serine-rich splicing factor 10 (Transformer-2-beta)
(HTRA2-beta) (Transformer 2 protein homolog)
Length = 288
Score = 58.5 bits (140), Expect = 8e-09
Identities = 29/62 (46%), Positives = 41/62 (66%)
Frame = +1
Query: 19 DLDKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKSRLDGAQLLGREIGVE 198
DL ++F KYG I ++ I D S R +GF FV FE+ DA++AK R +G +L GR I V+
Sbjct: 133 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
Query: 199 FT 204
F+
Sbjct: 193 FS 194
>sp|Q09511|RSP4_CAEEL Probable splicing factor, arginine/serine-rich 4 (RNA-binding
protein srp-2) (CeSC35)
Length = 196
Score = 58.5 bits (140), Expect = 8e-09
Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Frame = +1
Query: 1 DRVKYE----DLDKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKSRLDGA 168
D + Y+ DL + F +YG I ++ IP D YS + KGFGFV F + RDAE A R DG
Sbjct: 24 DNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGK 83
Query: 169 QLLGREIGV 195
+ GRE+ V
Sbjct: 84 LVDGRELRV 92
>sp|Q57014|RBPA_SYNY3 Putative RNA-binding protein rbpA
Length = 101
Score = 55.8 bits (133), Expect = 5e-08
Identities = 30/77 (38%), Positives = 43/77 (55%)
Frame = +1
Query: 7 VKYEDLDKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKSRLDGAQLLGRE 186
V DL +F +YG + +++P D +GRM+GFGFVE E + A LDGA+ +GR+
Sbjct: 12 VSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEALDGAEWMGRD 71
Query: 187 IGVEFTNGYKKTPAEMR 237
+ V K P E R
Sbjct: 72 LKVN-----KAKpreNR 83
>sp|P26686|SRR55_DROME Serine-arginine protein 55 (SRP55) (Enhancer of deformed) (52-kDa
bracketing protein) (B52 protein)
Length = 376
Score = 55.5 bits (132), Expect = 6e-08
Identities = 30/68 (44%), Positives = 40/68 (58%)
Frame = +1
Query: 7 VKYEDLDKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKSRLDGAQLLGRE 186
V+ DL++ F YGR +I I G+GFVEFED+RDA+DA L+G +LLG
Sbjct: 15 VRERDLERFFKGYGRTRDILIK--------NGYGFVEFEDYRDADDAVYELNGKELLGER 66
Query: 187 IGVEFTNG 210
+ VE G
Sbjct: 67 VVVEPARG 74
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,184,875
Number of Sequences: 369166
Number of extensions: 648307
Number of successful extensions: 2074
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2032
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2871696580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)