Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_J05
(739 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O75494|FUSIP_HUMAN FUS-interacting serine-arginine-rich ... 49 1e-05
sp|Q8WXF0|SRR35_HUMAN 35 kDa SR repressor protein (SRrp35) 47 4e-05
sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/ser... 38 0.025
sp|P84103|SFRS3_HUMAN Splicing factor, arginine/serine-rich... 37 0.072
sp|Q02427|RBP1_DROME RNA-binding protein 1 35 0.16
sp|P26686|SRR55_DROME Serine-arginine protein 55 (SRP55) (E... 35 0.16
sp|P30352|SFRS2_CHICK Splicing factor, arginine/serine-rich... 34 0.46
sp|Q6PDU1|SFRS2_RAT Splicing factor, arginine/serine-rich 2... 34 0.46
sp|Q5R1W5|SFRS2_PANTR Splicing factor, arginine/serine-rich... 34 0.46
sp|Q18409|RSP6_CAEEL Probable splicing factor, arginine/ser... 33 0.79
>sp|O75494|FUSIP_HUMAN FUS-interacting serine-arginine-rich protein 1 (TLS-associated
protein with Ser-Arg repeats) (TLS-associated protein
with SR repeats) (TASR) (TLS-associated serine-arginine
protein) (TLS-associated SR protein) (40 kDa
SR-repressor protein) (SRrp40) (Splicing factor SRp38)
sp|Q9R0U0|FUSIP_MOUSE FUS-interacting serine-arginine-rich protein 1 (TLS-associated
protein with Ser-Arg repeats) (TLS-associated protein
with SR repeats) (TASR) (TLS-associated serine-arginine
protein) (TLS-associated SR protein) (Neural-specific SR
protein) (Neural-salient serine/arginine-rich protein)
Length = 262
Score = 48.9 bits (115), Expect = 1e-05
Identities = 23/46 (50%), Positives = 30/46 (65%)
Frame = +2
Query: 374 FEDFRDAEDAKSRLDGAQLLGREIGVEFTNGYKKTPAEMRDKEKTN 511
FED RDAEDA LD + GR+I ++F G +KTP +M+ KE N
Sbjct: 58 FEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRN 103
>sp|Q8WXF0|SRR35_HUMAN 35 kDa SR repressor protein (SRrp35)
Length = 261
Score = 47.4 bits (111), Expect = 4e-05
Identities = 21/44 (47%), Positives = 30/44 (68%)
Frame = +2
Query: 374 FEDFRDAEDAKSRLDGAQLLGREIGVEFTNGYKKTPAEMRDKEK 505
FED RDAEDA L+ + GR+I ++F G +KTP +M+ KE+
Sbjct: 58 FEDVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKER 101
>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3 (CeSF2)
(CeSF2/ASF)
Length = 258
Score = 38.1 bits (87), Expect = 0.025
Identities = 19/31 (61%), Positives = 20/31 (64%)
Frame = +2
Query: 374 FEDFRDAEDAKSRLDGAQLLGREIGVEFTNG 466
FED RDAEDA DG + GR I VEFT G
Sbjct: 53 FEDHRDAEDAVRARDGYEFDGRRIRVEFTRG 83
>sp|P84103|SFRS3_HUMAN Splicing factor, arginine/serine-rich 3 (Pre-mRNA splicing factor
SRP20)
sp|P84104|SFRS3_MOUSE Splicing factor, arginine/serine-rich 3 (Pre-mRNA splicing factor
SRP20) (X16 protein)
Length = 164
Score = 36.6 bits (83), Expect = 0.072
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +2
Query: 374 FEDFRDAEDAKSRLDGAQLLGREIGVEFTNGYKKT 478
FED RDA DA LDG L G + VE +NG K++
Sbjct: 53 FEDPRDAADAVRELDGRTLCGCRVRVELSNGEKRS 87
>sp|Q02427|RBP1_DROME RNA-binding protein 1
Length = 144
Score = 35.4 bits (80), Expect = 0.16
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +2
Query: 374 FEDFRDAEDAKSRLDGAQLLGREIGVEFTNG 466
FED RDAEDA LDG + G I VE ++G
Sbjct: 54 FEDRRDAEDATRALDGTRCCGTRIRVEMSSG 84
>sp|P26686|SRR55_DROME Serine-arginine protein 55 (SRP55) (Enhancer of deformed) (52-kDa
bracketing protein) (B52 protein)
Length = 376
Score = 35.4 bits (80), Expect = 0.16
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +2
Query: 374 FEDFRDAEDAKSRLDGAQLLGREIGVEFTNG 466
FED+RDA+DA L+G +LLG + VE G
Sbjct: 44 FEDYRDADDAVYELNGKELLGERVVVEPARG 74
>sp|P30352|SFRS2_CHICK Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
(SC-35) (Splicing component, 35 kDa) (PR264 protein)
Length = 221
Score = 33.9 bits (76), Expect = 0.46
Identities = 18/36 (50%), Positives = 22/36 (61%)
Frame = +2
Query: 374 FEDFRDAEDAKSRLDGAQLLGREIGVEFTNGYKKTP 481
F D RDAEDA +DGA L GRE+ V+ Y + P
Sbjct: 62 FHDKRDAEDAMDAMDGAVLDGRELRVQMAR-YGRPP 96
>sp|Q6PDU1|SFRS2_RAT Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
(SC-35) (Splicing component, 35 kDa)
sp|Q62093|SFRS2_MOUSE Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
(SC-35) (Splicing component, 35 kDa) (PR264 protein)
sp|Q01130|SFRS2_HUMAN Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
(SC-35) (Splicing component, 35 kDa) (PR264 protein)
Length = 221
Score = 33.9 bits (76), Expect = 0.46
Identities = 18/36 (50%), Positives = 22/36 (61%)
Frame = +2
Query: 374 FEDFRDAEDAKSRLDGAQLLGREIGVEFTNGYKKTP 481
F D RDAEDA +DGA L GRE+ V+ Y + P
Sbjct: 62 FHDKRDAEDAMDAMDGAVLDGRELRVQMAR-YGRPP 96
>sp|Q5R1W5|SFRS2_PANTR Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
(SC-35) (Splicing component, 35 kDa)
Length = 221
Score = 33.9 bits (76), Expect = 0.46
Identities = 18/36 (50%), Positives = 22/36 (61%)
Frame = +2
Query: 374 FEDFRDAEDAKSRLDGAQLLGREIGVEFTNGYKKTP 481
F D RDAEDA +DGA L GRE+ V+ Y + P
Sbjct: 62 FHDKRDAEDAMDAMDGAVLDGRELRVQMAR-YGRPP 96
>sp|Q18409|RSP6_CAEEL Probable splicing factor, arginine/serine-rich 6 (RNA-binding
protein srp-1) (CeSRp20)
Length = 179
Score = 33.1 bits (74), Expect = 0.79
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 374 FEDFRDAEDAKSRLDGAQLLGREIGVEFTNGYKK 475
++D RDAEDA LDG+++ G VE + G ++
Sbjct: 46 YDDVRDAEDAVRALDGSRICGVRARVELSTGQRR 79
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,555,795
Number of Sequences: 369166
Number of extensions: 1142831
Number of successful extensions: 2366
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2366
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6631293200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)