Planaria EST Database

DrC_01046

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01046
         (1262 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9H3E2|SNX25_HUMAN  Sorting nexin-25                            70   2e-11
sp|Q6GDH2|CLFB_STAAR  Clumping factor B precursor (Fibrinoge...    35   0.35 
sp|Q7A382|CLFB_STAAN  Clumping factor B precursor (Fibrinoge...    35   0.46 
sp|Q5HCR7|CLFB_STAAC  Clumping factor B precursor (Fibrinoge...    35   0.46 
sp|Q6G644|CLFB_STAAS  Clumping factor B precursor (Fibrinoge...    33   1.3  
sp|Q8NUL0|CLFB_STAAW  Clumping factor B precursor (Fibrinoge...    33   1.3  
sp|P50102|UBP8_YEAST  Ubiquitin carboxyl-terminal hydrolase ...    33   2.3  

>sp|Q9H3E2|SNX25_HUMAN Sorting nexin-25
          Length = 538

 Score = 69.7 bits (169), Expect = 2e-11
 Identities = 65/265 (24%), Positives = 112/265 (42%), Gaps = 2/265 (0%)
 Frame = +2

Query: 62  FIMVSLVSALDQYNSKEDNGWLVKHTLKDFQALKRELNAINNSIEKISLPKVPQRLFMRR 241
           F+MVSL     +    E   W V   L +FQ L R+L+    S++K+ LP + +  F  +
Sbjct: 229 FVMVSL----QEVGGVETKNWTVPRRLSEFQNLHRKLSECVPSLKKVQLPSLSKLPF--K 282

Query: 242 KYTDNDLTHIKDSLNKFIQFIVKSDILAKSEPVFKFFCNSVESGQMPNEDTL-MGPLSNF 418
                 +   K+ LNKF+Q ++  + L +SE ++ F          P+ D L +  +   
Sbjct: 283 SIDQKFMEKSKNQLNKFLQNLLSDERLCQSEALYAFL--------SPSPDYLKVIDVQGK 334

Query: 419 ANTLSDASAKVMLMAKIPSKFVQKVLAPRKHSGSATSLDSESTDSKSDKRNAFRRXXXXX 598
            N+ S +S     + ++P  F         H    T  DS+ +D   D            
Sbjct: 335 KNSFSLSS----FLERLPRDFF-------SHQEEETEEDSDLSDYGDD------------ 371

Query: 599 XXXXXLKHKLRKFSHSKD-ISMSAFELLEELIQLRKSLTLTRRSMITFVQSFFGKNLTQI 775
                           KD ++   F L+ E+ +LR      RR++I  VQ  FG+ + + 
Sbjct: 372 ------------VDGRKDALAEPCFMLIGEIFELRGMFKWVRRTLIALVQVTFGRTINKQ 419

Query: 776 LTEKVAWIKSESTVFVCLQKYRDSF 850
           + + V+WI SE  +   +  +RD+F
Sbjct: 420 IRDTVSWIFSEQMLVYYINIFRDAF 444

>sp|Q6GDH2|CLFB_STAAR Clumping factor B precursor (Fibrinogen-binding protein B)
            (Fibrinogen receptor B)
          Length = 873

 Score = 35.4 bits (80), Expect = 0.35
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +2

Query: 968  ETNLQHVNSNSSPTMNKARFYQKNDTSSCENFDSYYPAPSDKQVENETGSVKAGINF 1138
            +  ++  +   S T  K R ++ NDTS     DSYY  P+D  ++  TG  K  I++
Sbjct: 414  QDKIEESSGKVSATDTKLRIFEVNDTSKLS--DSYYADPNDSNLKEVTGEFKDKISY 468

>sp|Q7A382|CLFB_STAAN Clumping factor B precursor (Fibrinogen-binding protein B)
            (Fibrinogen receptor B)
 sp|Q99R07|CLFB_STAAM Clumping factor B precursor (Fibrinogen-binding protein B)
            (Fibrinogen receptor B)
          Length = 877

 Score = 35.0 bits (79), Expect = 0.46
 Identities = 21/72 (29%), Positives = 32/72 (44%)
 Frame = +2

Query: 968  ETNLQHVNSNSSPTMNKARFYQKNDTSSCENFDSYYPAPSDKQVENETGSVKAGINFNQT 1147
            +  ++  +   S T  K R ++ NDTS     DSYY  P+D  ++  T   K  I +   
Sbjct: 414  QDKIEESSGKVSATDTKLRIFEVNDTSKLS--DSYYADPNDSNLKEVTDQFKNRIYYEHP 471

Query: 1148 WTYSIKCDEAVK 1183
               SIK  +  K
Sbjct: 472  NVASIKFGDITK 483

>sp|Q5HCR7|CLFB_STAAC Clumping factor B precursor (Fibrinogen-binding protein B)
            (Fibrinogen receptor B)
          Length = 913

 Score = 35.0 bits (79), Expect = 0.46
 Identities = 21/72 (29%), Positives = 32/72 (44%)
 Frame = +2

Query: 968  ETNLQHVNSNSSPTMNKARFYQKNDTSSCENFDSYYPAPSDKQVENETGSVKAGINFNQT 1147
            +  ++  +   S T  K R ++ NDTS     DSYY  P+D  ++  T   K  I +   
Sbjct: 414  QDKIEESSGKVSATDTKLRIFEVNDTSKLS--DSYYADPNDSNLKEVTDQFKNRIYYEHP 471

Query: 1148 WTYSIKCDEAVK 1183
               SIK  +  K
Sbjct: 472  NVASIKFGDITK 483

>sp|Q6G644|CLFB_STAAS Clumping factor B precursor (Fibrinogen-binding protein B)
            (Fibrinogen receptor B)
          Length = 905

 Score = 33.5 bits (75), Expect = 1.3
 Identities = 23/85 (27%), Positives = 36/85 (42%)
 Frame = +2

Query: 968  ETNLQHVNSNSSPTMNKARFYQKNDTSSCENFDSYYPAPSDKQVENETGSVKAGINFNQT 1147
            +  ++  +   S T  K R ++ NDTS     DSYY  P+D  ++  T   K  I +   
Sbjct: 414  QDKIEESSGKVSATDTKLRIFEVNDTSKLS--DSYYADPNDSNLKEVTDQFKDKITYKYQ 471

Query: 1148 WTYSIKCDEAVKRLLWELVPEYWKT 1222
               SI   +  K  +  +   Y KT
Sbjct: 472  NVASINFGDINKTYVVLVEGHYDKT 496

>sp|Q8NUL0|CLFB_STAAW Clumping factor B precursor (Fibrinogen-binding protein B)
            (Fibrinogen receptor B)
          Length = 907

 Score = 33.5 bits (75), Expect = 1.3
 Identities = 23/85 (27%), Positives = 36/85 (42%)
 Frame = +2

Query: 968  ETNLQHVNSNSSPTMNKARFYQKNDTSSCENFDSYYPAPSDKQVENETGSVKAGINFNQT 1147
            +  ++  +   S T  K R ++ NDTS     DSYY  P+D  ++  T   K  I +   
Sbjct: 414  QDKIEESSGKVSATDTKLRIFEVNDTSKLS--DSYYADPNDSNLKEVTDQFKDKITYKYQ 471

Query: 1148 WTYSIKCDEAVKRLLWELVPEYWKT 1222
               SI   +  K  +  +   Y KT
Sbjct: 472  NVASINFGDINKTYVVLVEGHYDKT 496

>sp|P50102|UBP8_YEAST Ubiquitin carboxyl-terminal hydrolase 8 (Ubiquitin thiolesterase 8)
           (Ubiquitin-specific processing protease 8)
           (Deubiquitinating enzyme 8)
          Length = 471

 Score = 32.7 bits (73), Expect = 2.3
 Identities = 21/75 (28%), Positives = 37/75 (49%)
 Frame = +2

Query: 77  LVSALDQYNSKEDNGWLVKHTLKDFQALKRELNAINNSIEKISLPKVPQRLFMRRKYTDN 256
           L   LD ++ KE         LKDF     E N+  ++I+++ + K+P  L ++ K  ++
Sbjct: 316 LYECLDSFHKKEQ--------LKDFNYHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEH 367

Query: 257 DLTHIKDSLNKFIQF 301
            L      L+ FI+F
Sbjct: 368 LLNGSNRKLDDFIEF 382

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,461,139
Number of Sequences: 369166
Number of extensions: 2432517
Number of successful extensions: 6599
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6595
length of database: 68,354,980
effective HSP length: 113
effective length of database: 47,479,925
effective search space used: 14576336975
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01046

  1. Dr_sW_026_F12
  2. Dr_sW_016_I09