Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_I09
(829 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9H3E2|SNX25_HUMAN Sorting nexin-25 43 0.001
sp|Q6GDH2|CLFB_STAAR Clumping factor B precursor (Fibrinoge... 35 0.19
sp|Q7A382|CLFB_STAAN Clumping factor B precursor (Fibrinoge... 35 0.25
sp|Q5HCR7|CLFB_STAAC Clumping factor B precursor (Fibrinoge... 35 0.25
sp|Q6G644|CLFB_STAAS Clumping factor B precursor (Fibrinoge... 33 0.73
sp|Q8NUL0|CLFB_STAAW Clumping factor B precursor (Fibrinoge... 33 0.73
sp|Q9NRJ5|PAPOB_HUMAN Poly(A) polymerase beta (PAP beta) (P... 30 6.2
sp|O29350|Y912_ARCFU Hypothetical protein AF0912 precursor 30 6.2
sp|P38086|RDH54_YEAST DNA repair and recombination protein ... 30 6.2
sp|Q8K1Y2|KPCN_MOUSE Protein kinase C, nu type (nPKC-nu) 30 8.1
>sp|Q9H3E2|SNX25_HUMAN Sorting nexin-25
Length = 538
Score = 43.1 bits (100), Expect = 0.001
Identities = 20/61 (32%), Positives = 35/61 (57%)
Frame = +1
Query: 235 FELLEELIQLRKSLTLTRRSMITFVQSFFGKNLTQILTEKVAWIKSESTVFVCLQKYRDS 414
F L+ E+ +LR RR++I VQ FG+ + + + + V+WI SE + + +RD+
Sbjct: 384 FMLIGEIFELRGMFKWVRRTLIALVQVTFGRTINKQIRDTVSWIFSEQMLVYYINIFRDA 443
Query: 415 F 417
F
Sbjct: 444 F 444
>sp|Q6GDH2|CLFB_STAAR Clumping factor B precursor (Fibrinogen-binding protein B)
(Fibrinogen receptor B)
Length = 873
Score = 35.4 bits (80), Expect = 0.19
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 535 ETNLQHVNSNSSPTMNKARFYQKNDTSSCENFDSYYPAPSDKQVENETGSVKAGINF 705
+ ++ + S T K R ++ NDTS DSYY P+D ++ TG K I++
Sbjct: 414 QDKIEESSGKVSATDTKLRIFEVNDTSKLS--DSYYADPNDSNLKEVTGEFKDKISY 468
>sp|Q7A382|CLFB_STAAN Clumping factor B precursor (Fibrinogen-binding protein B)
(Fibrinogen receptor B)
sp|Q99R07|CLFB_STAAM Clumping factor B precursor (Fibrinogen-binding protein B)
(Fibrinogen receptor B)
Length = 877
Score = 35.0 bits (79), Expect = 0.25
Identities = 21/72 (29%), Positives = 32/72 (44%)
Frame = +1
Query: 535 ETNLQHVNSNSSPTMNKARFYQKNDTSSCENFDSYYPAPSDKQVENETGSVKAGINFNQT 714
+ ++ + S T K R ++ NDTS DSYY P+D ++ T K I +
Sbjct: 414 QDKIEESSGKVSATDTKLRIFEVNDTSKLS--DSYYADPNDSNLKEVTDQFKNRIYYEHP 471
Query: 715 WTYSIKCDEAVK 750
SIK + K
Sbjct: 472 NVASIKFGDITK 483
>sp|Q5HCR7|CLFB_STAAC Clumping factor B precursor (Fibrinogen-binding protein B)
(Fibrinogen receptor B)
Length = 913
Score = 35.0 bits (79), Expect = 0.25
Identities = 21/72 (29%), Positives = 32/72 (44%)
Frame = +1
Query: 535 ETNLQHVNSNSSPTMNKARFYQKNDTSSCENFDSYYPAPSDKQVENETGSVKAGINFNQT 714
+ ++ + S T K R ++ NDTS DSYY P+D ++ T K I +
Sbjct: 414 QDKIEESSGKVSATDTKLRIFEVNDTSKLS--DSYYADPNDSNLKEVTDQFKNRIYYEHP 471
Query: 715 WTYSIKCDEAVK 750
SIK + K
Sbjct: 472 NVASIKFGDITK 483
>sp|Q6G644|CLFB_STAAS Clumping factor B precursor (Fibrinogen-binding protein B)
(Fibrinogen receptor B)
Length = 905
Score = 33.5 bits (75), Expect = 0.73
Identities = 23/85 (27%), Positives = 36/85 (42%)
Frame = +1
Query: 535 ETNLQHVNSNSSPTMNKARFYQKNDTSSCENFDSYYPAPSDKQVENETGSVKAGINFNQT 714
+ ++ + S T K R ++ NDTS DSYY P+D ++ T K I +
Sbjct: 414 QDKIEESSGKVSATDTKLRIFEVNDTSKLS--DSYYADPNDSNLKEVTDQFKDKITYKYQ 471
Query: 715 WTYSIKCDEAVKRLLWELVPEYWKT 789
SI + K + + Y KT
Sbjct: 472 NVASINFGDINKTYVVLVEGHYDKT 496
>sp|Q8NUL0|CLFB_STAAW Clumping factor B precursor (Fibrinogen-binding protein B)
(Fibrinogen receptor B)
Length = 907
Score = 33.5 bits (75), Expect = 0.73
Identities = 23/85 (27%), Positives = 36/85 (42%)
Frame = +1
Query: 535 ETNLQHVNSNSSPTMNKARFYQKNDTSSCENFDSYYPAPSDKQVENETGSVKAGINFNQT 714
+ ++ + S T K R ++ NDTS DSYY P+D ++ T K I +
Sbjct: 414 QDKIEESSGKVSATDTKLRIFEVNDTSKLS--DSYYADPNDSNLKEVTDQFKDKITYKYQ 471
Query: 715 WTYSIKCDEAVKRLLWELVPEYWKT 789
SI + K + + Y KT
Sbjct: 472 NVASINFGDINKTYVVLVEGHYDKT 496
>sp|Q9NRJ5|PAPOB_HUMAN Poly(A) polymerase beta (PAP beta) (Polynucleotide
adenylyltransferase beta) (Testis-specific poly(A)
polymerase)
Length = 636
Score = 30.4 bits (67), Expect = 6.2
Identities = 33/95 (34%), Positives = 41/95 (43%), Gaps = 13/95 (13%)
Frame = +1
Query: 325 KNLTQILTEKVAWIK-SESTVFVCLQKYRDSFRVDMSTSLQNSMEAPVVDGESKLHPSAS 501
K L Q+L V K + ST L DS D+S +NSM P K P S
Sbjct: 491 KELHQLLPHHVLQDKKAHSTEGRRLTDLNDS-SFDLSAGCENSMSVPSSTSTMKTGPLIS 549
Query: 502 ----------AFITAHVSG--ATETNLQHVNSNSS 570
A +TA V+ ATE +LQ VN+N S
Sbjct: 550 SSQGRNSPALAVMTASVANIQATEFSLQQVNTNES 584
>sp|O29350|Y912_ARCFU Hypothetical protein AF0912 precursor
Length = 565
Score = 30.4 bits (67), Expect = 6.2
Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 2/128 (1%)
Frame = +1
Query: 403 YRDSFRVDMSTSLQNSMEAPVVDGESKLHPSASAFITAHVSGATETNLQHVNSNSSPTMN 582
YR +D + ++S E VV P F ++ + T L+ + +++P
Sbjct: 93 YRLKVVIDDTEPEEHSEEFKVVK------PKIKEFELKNLVYQSRTELEVLVESANPASL 146
Query: 583 KARFYQKNDTSSCENFDSYYPAPSDKQVENETGSVKAGINFNQTWTYSIKCDEAVK--RL 756
K R Y N D YY +D + E+ S K +N + + + +AVK +
Sbjct: 147 KLRLYGNN-------VDLYYEETADYEEESNVYSAKFDLNLREVYERTRDIADAVKPGKY 199
Query: 757 LWELVPEY 780
+ +L EY
Sbjct: 200 ILDLKLEY 207
>sp|P38086|RDH54_YEAST DNA repair and recombination protein RDH54 (RAD homolog 54)
(Recombination factor TID1) (Two-hybrid interaction with
DMC1 protein 1) [Includes: DNA topoisomerase ; Putative
helicase ]
Length = 924
Score = 30.4 bits (67), Expect = 6.2
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = +1
Query: 478 SKLHPSASAFITAHVSGATETNLQHVNSNSSPTMNKARFYQKNDTSSCEN---FDSYYPA 648
++L P+A+A TA +S A T + ++ PT+N A+ + N+ SS EN F Y
Sbjct: 23 TQLKPTATAVTTAPISKAKVTVNLKRSISAGPTLNLAK--KPNNLSSNENTRYFTIMYRK 80
Query: 649 PSDKQVENETG 681
P+ K+ + +G
Sbjct: 81 PTTKKHKTWSG 91
>sp|Q8K1Y2|KPCN_MOUSE Protein kinase C, nu type (nPKC-nu)
Length = 889
Score = 30.0 bits (66), Expect = 8.1
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -3
Query: 788 VFQYSGTNSHNNLLTASSHLIEYVQVWLKLIPAFTEPVS--FSTCLSDGAG 642
V + +G++SHN +L A+ ++ Q W K I PV+ S C S G G
Sbjct: 497 VGENNGSSSHNPVLAATGVGLDVAQSWEKAIRQALMPVTPQASVCTSPGQG 547
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.314 0.125 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,300,527
Number of Sequences: 369166
Number of extensions: 1579484
Number of successful extensions: 4397
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4397
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8004331590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)