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Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01044
         (739 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Y6X0|SETBP_HUMAN  SET-binding protein (SEB)                   30   6.7  
sp|Q8K1M4|GLIS1_MOUSE  Zinc finger protein GLIS1 (GLI-simila...    30   6.7  

>sp|Q9Y6X0|SETBP_HUMAN SET-binding protein (SEB)
          Length = 1542

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 9    PPVPPSNKPMSLNEELGVRKNQKSNDSQPAFQSPPIIPNPK 131
            PP+PP   P+      G RK++    +QP  QSPP  P P+
Sbjct: 1482 PPLPPP-PPLPKTPRGGKRKHKPQAPAQPPQQSPPQQPLPQ 1521

>sp|Q8K1M4|GLIS1_MOUSE Zinc finger protein GLIS1 (GLI-similar 1) (Gli homologous protein
           1) (GliH1)
          Length = 789

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 9   PPVPPSNKPMSLNEELGVRKNQKSNDSQPAFQSPPIIPNPK 131
           PP+PP+++  S   +        S  + P+FQSPP +P+P+
Sbjct: 643 PPLPPASQSQSPGGQSF--STVPSKPTYPSFQSPPPLPSPQ 681

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,996,681
Number of Sequences: 369166
Number of extensions: 725795
Number of successful extensions: 1531
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1527
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6631293200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

1. Dr_sW_027_N10
2. Dr_sW_026_E23
3. Dr_sW_027_L10
4. Dr_sW_025_I17