Planarian EST Database

Dr_sW_025_I17

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_025_I17
         (319 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9EVE4|DPO3B_BUCRP  DNA polymerase III, beta chain              28   5.0  

>sp|Q9EVE4|DPO3B_BUCRP DNA polymerase III, beta chain
          Length = 366

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 236 MSNETKNYPIITLSLPDFTHFVRIRKIFHFHKSKS*IKAII 114
           +S E  NY + TLS  DF +      I +FH S + +K +I
Sbjct: 99  VSCENSNYILSTLSADDFPNHQNFNHISNFHISSNILKEMI 139

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,790,039
Number of Sequences: 369166
Number of extensions: 364959
Number of successful extensions: 491
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 68,354,980
effective HSP length: 74
effective length of database: 54,684,590
effective search space used: 1695222290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)