Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_E23
(724 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y6X0|SETBP_HUMAN SET-binding protein (SEB) 30 6.5
sp|Q8K1M4|GLIS1_MOUSE Zinc finger protein GLIS1 (GLI-simila... 30 6.5
>sp|Q9Y6X0|SETBP_HUMAN SET-binding protein (SEB)
Length = 1542
Score = 30.0 bits (66), Expect = 6.5
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 9 PPVPPSNKPMSLNEELGVRKNQKSNDSQPAFQSPPIIPNPK 131
PP+PP P+ G RK++ +QP QSPP P P+
Sbjct: 1482 PPLPPP-PPLPKTPRGGKRKHKPQAPAQPPQQSPPQQPLPQ 1521
>sp|Q8K1M4|GLIS1_MOUSE Zinc finger protein GLIS1 (GLI-similar 1) (Gli homologous protein
1) (GliH1)
Length = 789
Score = 30.0 bits (66), Expect = 6.5
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 9 PPVPPSNKPMSLNEELGVRKNQKSNDSQPAFQSPPIIPNPK 131
PP+PP+++ S + S + P+FQSPP +P+P+
Sbjct: 643 PPLPPASQSQSPGGQSF--STVPSKPTYPSFQSPPPLPSPQ 681
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,685,197
Number of Sequences: 369166
Number of extensions: 716294
Number of successful extensions: 1502
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1498
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6462248555
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)