Planaria EST Database

DrC_01028

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01028
         (1268 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P19109|RM62_DROME  ATP-dependent RNA helicase P62              238   4e-62
sp|Q61656|DDX5_MOUSE  Probable RNA-dependent helicase p68 (D...   231   4e-60
sp|P17844|DDX5_HUMAN  Probable RNA-dependent helicase p68 (D...   231   4e-60
sp|Q92841|DDX17_HUMAN  Probable ATP-dependent helicase DDX17...   228   3e-59
sp|Q501J6|DDX17_MOUSE  Probable ATP-dependent helicase DDX17...   228   3e-59
sp|P24782|DBP2_SCHPO  Probable ATP-dependent RNA helicase DB...   220   6e-57
sp|Q6FLF3|DBP2_CANGA  Probable ATP-dependent RNA helicase DBP2    220   6e-57
sp|Q6C4D4|DBP2_YARLI  Probable ATP-dependent RNA helicase DBP2    219   1e-56
sp|Q6CIV2|DBP2_KLULA  Probable ATP-dependent RNA helicase DBP2    215   2e-55
sp|P24783|DBP2_YEAST  Probable ATP-dependent RNA helicase DB...   213   1e-54

>sp|P19109|RM62_DROME ATP-dependent RNA helicase P62
          Length = 719

 Score =  238 bits (606), Expect = 4e-62
 Identities = 118/226 (52%), Positives = 157/226 (69%), Gaps = 5/226 (2%)
 Frame = +1

Query: 1    RMLDMGFEPQIRKIFSQIRYDRQTLMWSATWPKEVQKLAQDFLGKYIQVNIGSRDLHANP 180
            RMLDMGFEPQIRKI SQIR DRQTLMWSATWPKEV++LA+DFLG YIQ+NIGS +L AN 
Sbjct: 439  RMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANH 498

Query: 181  DIEQFVEIVEDFSKDSRLVDIIKKY-----PLDKMIVFTETKKKADKICGLLRLSGFNSG 345
            +I Q V++ ++FSK+ +L  ++           K+I+F ETK++ D +   +R  G   G
Sbjct: 499  NIRQVVDVCDEFSKEEKLKTLLSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCG 558

Query: 346  SMHGDKSQKDREYILQGFRNKSLNILVATDVASRGLDVDDIKIVINYDFPNQFEDYIHRI 525
            ++HGDKSQ +R+++L+ FR+   NILVATDVA+RGLDVD IK VIN+D+P   EDYIHRI
Sbjct: 559  AIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRI 618

Query: 526  GRTARSGKRGMSYTFFNRXXXXXXXXXXXXMEDAKQVVPDGLYDMA 663
            GRT RS  +G S+ FF +            + +A Q +   L ++A
Sbjct: 619  GRTGRSNTKGTSFAFFTKNNAKQAKALVDVLREANQEINPALENLA 664

>sp|Q61656|DDX5_MOUSE Probable RNA-dependent helicase p68 (DEAD-box protein p68)
           (DEAD-box protein 5) (DEAD-box RNA helicase DEAD1)
           (mDEAD1)
          Length = 614

 Score =  231 bits (588), Expect = 4e-60
 Identities = 114/216 (52%), Positives = 153/216 (70%), Gaps = 3/216 (1%)
 Frame = +1

Query: 1   RMLDMGFEPQIRKIFSQIRYDRQTLMWSATWPKEVQKLAQDFLGKYIQVNIGSRDLHANP 180
           RMLDMGFEPQIRKI  QIR DRQTLMWSATWPKEV++LA+DFL  YI +NIG+ +L AN 
Sbjct: 252 RMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANH 311

Query: 181 DIEQFVEIVEDFSKDSRLVDIIKKYPLDK---MIVFTETKKKADKICGLLRLSGFNSGSM 351
           +I Q V++  D  KD +L+ ++++   +K    IVF ETK++ D++   +R  G+ +  +
Sbjct: 312 NILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGI 371

Query: 352 HGDKSQKDREYILQGFRNKSLNILVATDVASRGLDVDDIKIVINYDFPNQFEDYIHRIGR 531
           HGDKSQ++R+++L  F++    IL+ATDVASRGLDV+D+K VINYD+PN  EDYIHRIGR
Sbjct: 372 HGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGR 431

Query: 532 TARSGKRGMSYTFFNRXXXXXXXXXXXXMEDAKQVV 639
           TARS K G +YTFF              + +A Q +
Sbjct: 432 TARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAI 467

>sp|P17844|DDX5_HUMAN Probable RNA-dependent helicase p68 (DEAD-box protein p68)
           (DEAD-box protein 5)
          Length = 614

 Score =  231 bits (588), Expect = 4e-60
 Identities = 114/216 (52%), Positives = 153/216 (70%), Gaps = 3/216 (1%)
 Frame = +1

Query: 1   RMLDMGFEPQIRKIFSQIRYDRQTLMWSATWPKEVQKLAQDFLGKYIQVNIGSRDLHANP 180
           RMLDMGFEPQIRKI  QIR DRQTLMWSATWPKEV++LA+DFL  YI +NIG+ +L AN 
Sbjct: 252 RMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANH 311

Query: 181 DIEQFVEIVEDFSKDSRLVDIIKKYPLDK---MIVFTETKKKADKICGLLRLSGFNSGSM 351
           +I Q V++  D  KD +L+ ++++   +K    IVF ETK++ D++   +R  G+ +  +
Sbjct: 312 NILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGI 371

Query: 352 HGDKSQKDREYILQGFRNKSLNILVATDVASRGLDVDDIKIVINYDFPNQFEDYIHRIGR 531
           HGDKSQ++R+++L  F++    IL+ATDVASRGLDV+D+K VINYD+PN  EDYIHRIGR
Sbjct: 372 HGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGR 431

Query: 532 TARSGKRGMSYTFFNRXXXXXXXXXXXXMEDAKQVV 639
           TARS K G +YTFF              + +A Q +
Sbjct: 432 TARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAI 467

>sp|Q92841|DDX17_HUMAN Probable ATP-dependent helicase DDX17 (DEAD-box protein 17)
           (RNA-dependent helicase p72) (DEAD-box protein p72)
          Length = 650

 Score =  228 bits (581), Expect = 3e-59
 Identities = 111/216 (51%), Positives = 152/216 (70%), Gaps = 3/216 (1%)
 Frame = +1

Query: 1   RMLDMGFEPQIRKIFSQIRYDRQTLMWSATWPKEVQKLAQDFLGKYIQVNIGSRDLHANP 180
           RMLDMGFEPQIRKI  QIR DRQTLMWSATWPKEV++LA+DFL  Y Q+N+G+ +L AN 
Sbjct: 250 RMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANH 309

Query: 181 DIEQFVEIVEDFSKDSRLVDIIKKYPLDK---MIVFTETKKKADKICGLLRLSGFNSGSM 351
           +I Q V++  +  KD +L+ ++++   +K    I+F ETK++ D +   +R  G+ +  +
Sbjct: 310 NILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCI 369

Query: 352 HGDKSQKDREYILQGFRNKSLNILVATDVASRGLDVDDIKIVINYDFPNQFEDYIHRIGR 531
           HGDKSQ +R+++L  FR+    IL+ATDVASRGLDV+D+K VINYD+PN  EDY+HRIGR
Sbjct: 370 HGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGR 429

Query: 532 TARSGKRGMSYTFFNRXXXXXXXXXXXXMEDAKQVV 639
           TARS  +G +YTFF              +E+A Q +
Sbjct: 430 TARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAI 465

>sp|Q501J6|DDX17_MOUSE Probable ATP-dependent helicase DDX17 (DEAD-box protein 17)
          Length = 650

 Score =  228 bits (581), Expect = 3e-59
 Identities = 111/216 (51%), Positives = 152/216 (70%), Gaps = 3/216 (1%)
 Frame = +1

Query: 1   RMLDMGFEPQIRKIFSQIRYDRQTLMWSATWPKEVQKLAQDFLGKYIQVNIGSRDLHANP 180
           RMLDMGFEPQIRKI  QIR DRQTLMWSATWPKEV++LA+DFL  Y Q+N+G+ +L AN 
Sbjct: 250 RMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANH 309

Query: 181 DIEQFVEIVEDFSKDSRLVDIIKKYPLDK---MIVFTETKKKADKICGLLRLSGFNSGSM 351
           +I Q V++  +  KD +L+ ++++   +K    I+F ETK++ D +   +R  G+ +  +
Sbjct: 310 NILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCI 369

Query: 352 HGDKSQKDREYILQGFRNKSLNILVATDVASRGLDVDDIKIVINYDFPNQFEDYIHRIGR 531
           HGDKSQ +R+++L  FR+    IL+ATDVASRGLDV+D+K VINYD+PN  EDY+HRIGR
Sbjct: 370 HGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGR 429

Query: 532 TARSGKRGMSYTFFNRXXXXXXXXXXXXMEDAKQVV 639
           TARS  +G +YTFF              +E+A Q +
Sbjct: 430 TARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAI 465

>sp|P24782|DBP2_SCHPO Probable ATP-dependent RNA helicase DBP2 (p68-like protein)
          Length = 550

 Score =  220 bits (561), Expect = 6e-57
 Identities = 119/263 (45%), Positives = 166/263 (63%), Gaps = 3/263 (1%)
 Frame = +1

Query: 1    RMLDMGFEPQIRKIFSQIRYDRQTLMWSATWPKEVQKLAQDFLGKYIQVNIGSRDLHANP 180
            RMLDMGFEPQIRKI  QIR DRQT+M+SATWPKEVQ+LA+D+L  YIQV +GS DL A+ 
Sbjct: 280  RMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASH 339

Query: 181  DIEQFVEIVEDFSKDSRL---VDIIKKYPLDKMIVFTETKKKADKICGLLRLSGFNSGSM 351
            +I+Q VE+V++  K +RL   ++ + K   +K+++FT TK+ AD I   LR  G+ + ++
Sbjct: 340  NIKQIVEVVDNADKRARLGKDIEEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAI 399

Query: 352  HGDKSQKDREYILQGFRNKSLNILVATDVASRGLDVDDIKIVINYDFPNQFEDYIHRIGR 531
            HGDK+Q +R+++L  FR     I+VATDVASRG+DV  I  V NYDFP   EDY+HRIGR
Sbjct: 400  HGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGR 459

Query: 532  TARSGKRGMSYTFFNRXXXXXXXXXXXXMEDAKQVVPDGLYDMAFVPNEKRRKPYNNNPL 711
            T R+G +G +YT+F              + +AKQ +   L +MA   +  R   Y     
Sbjct: 460  TGRAGAKGTAYTYFTSDNAKQARELVSILSEAKQDIDPKLEEMARYSSGGRGGNYRRGG- 518

Query: 712  FSNGFYQPNSSLGKSTLAYTSSD 780
            +  G ++     G     +T S+
Sbjct: 519  YGRGGFRRGGGYGNRNRGFTGSN 541

>sp|Q6FLF3|DBP2_CANGA Probable ATP-dependent RNA helicase DBP2
          Length = 544

 Score =  220 bits (561), Expect = 6e-57
 Identities = 117/247 (47%), Positives = 156/247 (63%), Gaps = 5/247 (2%)
 Frame = +1

Query: 1   RMLDMGFEPQIRKIFSQIRYDRQTLMWSATWPKEVQKLAQDFLGKYIQVNIGSRDLHANP 180
           RMLDMGFEPQIRKI  QIR DRQTLMWSATWPKEVQ+LA+D+L   IQV IGS +L A+ 
Sbjct: 268 RMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQQLARDYLNDPIQVQIGSLELAASH 327

Query: 181 DIEQFVEIVEDFSKDSRLV---DIIKKYPLDKMIVFTETKKKADKICGLLRLSGFNSGSM 351
           +I Q VE+V +F K  RLV   D   +    K+++F  TK+  D+I   LR  G+ + ++
Sbjct: 328 NITQLVEVVSEFEKRDRLVKHLDTASQDKESKILIFASTKRTCDEITSYLRQDGWPALAI 387

Query: 352 HGDKSQKDREYILQGFRNKSLNILVATDVASRGLDVDDIKIVINYDFPNQFEDYIHRIGR 531
           HGDK Q++R+++L  FR  +  I+VATDVA+RG+DV  I  V+NYD P   EDY+HRIGR
Sbjct: 388 HGDKDQRERDWVLNEFRTGNSPIMVATDVAARGIDVKGINFVVNYDMPGNIEDYVHRIGR 447

Query: 532 TARSGKRGMSYTFFNRXXXXXXXXXXXXMEDAKQVVPDGL--YDMAFVPNEKRRKPYNNN 705
           T R+G  G + +FF              M +AKQ +P+ L  YD         R+P   +
Sbjct: 448 TGRAGATGTAISFFTEDNKSLGASLISIMREAKQNIPEELMKYD---------RRPRGPH 498

Query: 706 PLFSNGF 726
           P +  G+
Sbjct: 499 PRYGGGY 505

>sp|Q6C4D4|DBP2_YARLI Probable ATP-dependent RNA helicase DBP2
          Length = 552

 Score =  219 bits (558), Expect = 1e-56
 Identities = 113/223 (50%), Positives = 149/223 (66%), Gaps = 3/223 (1%)
 Frame = +1

Query: 1   RMLDMGFEPQIRKIFSQIRYDRQTLMWSATWPKEVQKLAQDFLGKYIQVNIGSRDLHANP 180
           RMLDMGFEPQIRKI  QIR DRQTLMWSATWPKEVQ+LA D+L   IQVNIGS +L A+ 
Sbjct: 274 RMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQRLAHDYLKDQIQVNIGSLELSASH 333

Query: 181 DIEQFVEIVEDFSKDSRLV---DIIKKYPLDKMIVFTETKKKADKICGLLRLSGFNSGSM 351
           +I Q VE+  ++ K  RLV   + + +    K ++FT TK+ AD I   LR  G+ + ++
Sbjct: 334 NITQVVEVCTEYEKRDRLVKHLETVMENKESKCLIFTGTKRVADDITKFLRQDGWPALAI 393

Query: 352 HGDKSQKDREYILQGFRNKSLNILVATDVASRGLDVDDIKIVINYDFPNQFEDYIHRIGR 531
           HGDK Q++R+++L  FR     I+VATDVASRG+DV  I  VINYD+P+  EDY+HRIGR
Sbjct: 394 HGDKQQQERDWVLNEFRQGKSPIMVATDVASRGIDVKGINFVINYDYPSNSEDYVHRIGR 453

Query: 532 TARSGKRGMSYTFFNRXXXXXXXXXXXXMEDAKQVVPDGLYDM 660
           T R+G +G +YT+F              + +AKQ +   L +M
Sbjct: 454 TGRAGTKGTAYTYFTEDNRKQARDLLVILREAKQHIDPKLEEM 496

>sp|Q6CIV2|DBP2_KLULA Probable ATP-dependent RNA helicase DBP2
          Length = 554

 Score =  215 bits (547), Expect = 2e-55
 Identities = 117/246 (47%), Positives = 152/246 (61%), Gaps = 5/246 (2%)
 Frame = +1

Query: 1   RMLDMGFEPQIRKIFSQIRYDRQTLMWSATWPKEVQKLAQDFLGKYIQVNIGSRDLHANP 180
           RMLDMGFEPQIRKI  QIR DRQTLMWSATWPKEV++LA D+L   IQV IGS +L A+ 
Sbjct: 271 RMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASH 330

Query: 181 DIEQFVEIVEDFSKDSRLVDIIKKYPLD---KMIVFTETKKKADKICGLLRLSGFNSGSM 351
            I Q VE++ DF K  RL   ++    D   K+I+F  TK+  D+I   LR  G+ + ++
Sbjct: 331 TITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAI 390

Query: 352 HGDKSQKDREYILQGFRNKSLNILVATDVASRGLDVDDIKIVINYDFPNQFEDYIHRIGR 531
           HGDK+Q +R+++L  FR+    I+VATDVA+RG+DV  I  VINYD P   EDY+HRIGR
Sbjct: 391 HGDKAQNERDWVLAEFRSGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGR 450

Query: 532 TARSGKRGMSYTFFNRXXXXXXXXXXXXMEDAKQVVPDGL--YDMAFVPNEKRRKPYNNN 705
           T R+G  G + +FF              M +AKQ +P+ L  YD         R  Y  +
Sbjct: 451 TGRAGSTGTAISFFTEGNKSLGAALIKIMREAKQDIPEELRRYD---------RGQYGQH 501

Query: 706 PLFSNG 723
           P +  G
Sbjct: 502 PRYGGG 507

>sp|P24783|DBP2_YEAST Probable ATP-dependent RNA helicase DBP2 (p68-like protein)
          Length = 546

 Score =  213 bits (541), Expect = 1e-54
 Identities = 111/220 (50%), Positives = 142/220 (64%), Gaps = 3/220 (1%)
 Frame = +1

Query: 1   RMLDMGFEPQIRKIFSQIRYDRQTLMWSATWPKEVQKLAQDFLGKYIQVNIGSRDLHANP 180
           RMLDMGFEPQIRKI  QIR DRQTLMWSATWPKEV++LA D+L   IQV +GS +L A+ 
Sbjct: 271 RMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASH 330

Query: 181 DIEQFVEIVEDFSKDSRLVDIIKKYPLD---KMIVFTETKKKADKICGLLRLSGFNSGSM 351
           +I Q VE+V DF K  RL   ++    D   K ++F  TK+  D I   LR  G+ + ++
Sbjct: 331 NITQIVEVVSDFEKRDRLNKYLETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAI 390

Query: 352 HGDKSQKDREYILQGFRNKSLNILVATDVASRGLDVDDIKIVINYDFPNQFEDYIHRIGR 531
           HGDK Q++R+++LQ FRN    I+VATDVA+RG+DV  I  VINYD P   EDY+HRIGR
Sbjct: 391 HGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGR 450

Query: 532 TARSGKRGMSYTFFNRXXXXXXXXXXXXMEDAKQVVPDGL 651
           T R+G  G + +FF              M +A Q +P  L
Sbjct: 451 TGRAGATGTAISFFTEQNKGLGAKLISIMREANQNIPPEL 490

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,721,601
Number of Sequences: 369166
Number of extensions: 3052279
Number of successful extensions: 9372
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9198
length of database: 68,354,980
effective HSP length: 113
effective length of database: 47,479,925
effective search space used: 14671296825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01028

  1. Dr_sW_025_P04
  2. Dr_sW_007_P17
  3. Dr_sW_003_C09