Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_P17
(937 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P46942|DB10_NICSY RNA helicase-like protein DB10 74 6e-13
sp|P16381|PL10_MOUSE Putative ATP-dependent RNA helicase PL10 74 8e-13
sp|P24346|AN3_XENLA Putative ATP-dependent RNA helicase An3 71 4e-12
sp|Q62167|DDX3X_MOUSE DEAD-box protein 3, X-chromosomal (DE... 71 5e-12
sp|O00571|DDX3X_HUMAN DEAD-box protein 3, X-chromosomal (He... 70 1e-11
sp|Q92841|DDX17_HUMAN Probable ATP-dependent helicase DDX17... 69 2e-11
sp|Q501J6|DDX17_MOUSE Probable ATP-dependent helicase DDX17... 69 2e-11
sp|Q61656|DDX5_MOUSE Probable RNA-dependent helicase p68 (D... 68 3e-11
sp|Q62095|DDX3Y_MOUSE DEAD-box protein 3, Y-chromosomal (DE... 68 3e-11
sp|P17844|DDX5_HUMAN Probable RNA-dependent helicase p68 (D... 68 3e-11
>sp|P46942|DB10_NICSY RNA helicase-like protein DB10
Length = 607
Score = 73.9 bits (180), Expect = 6e-13
Identities = 35/73 (47%), Positives = 45/73 (61%)
Frame = +1
Query: 118 RFANVDDIKIVINYDFPNQFEDYIHRIGRTARSGKRGMSYTFFNRXXXXXXXXXXXXMED 297
R ++ DI++VINYDFP EDY+HRIGRT R+G G++YTFF+ +E
Sbjct: 451 RGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGASGLAYTFFSDQDSKHALDLVKVLEG 510
Query: 298 AKQVVPDGLYDMA 336
A Q VP L DMA
Sbjct: 511 ANQCVPTELRDMA 523
>sp|P16381|PL10_MOUSE Putative ATP-dependent RNA helicase PL10
Length = 660
Score = 73.6 bits (179), Expect = 8e-13
Identities = 42/119 (35%), Positives = 63/119 (52%), Gaps = 2/119 (1%)
Frame = +1
Query: 118 RFANVDDIKIVINYDFPNQFEDYIHRIGRTARSGKRGMSYTFFNRXXXXXXXXXXXXMED 297
R ++ ++K VIN+D P+ E+Y+HRIGRT R G G++ +FFN + +
Sbjct: 502 RGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVE 561
Query: 298 AKQVVPDGLYDMAFVPNEKRRKPYNNNPLFSNGF--YQPNSSLGKSTLAYTSSDLSNSK 468
AKQ VP L +MAF + K + FS GF S G S+ +++S SNS+
Sbjct: 562 AKQEVPSWLENMAFEHHYKGGSRGRSKSRFSGGFGARDYRQSSGASSSSFSSGRASNSR 620
>sp|P24346|AN3_XENLA Putative ATP-dependent RNA helicase An3
Length = 697
Score = 71.2 bits (173), Expect = 4e-12
Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Frame = +1
Query: 118 RFANVDDIKIVINYDFPNQFEDYIHRIGRTARSGKRGMSYTFFNRXXXXXXXXXXXXMED 297
R ++ ++K VIN+D P+ E+Y+HRIGRT R G G++ +FFN + +
Sbjct: 544 RGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNINITKDLLDLLVE 603
Query: 298 AKQVVPDGLYDMAFVPNEKRRKPYNNNPLFSNGF----YQPNSSLGKS 429
AKQ VP L +MA+ + K + FS GF Y+ +S G S
Sbjct: 604 AKQEVPSWLENMAYEQHHKSSSRGRSKSRFSGGFGAKDYRQSSGAGSS 651
>sp|Q62167|DDX3X_MOUSE DEAD-box protein 3, X-chromosomal (DEAD-box RNA helicase DEAD3)
(mDEAD3) (Embryonic RNA helicase) (D1Pas1-related
sequence 2)
Length = 662
Score = 70.9 bits (172), Expect = 5e-12
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 3/120 (2%)
Frame = +1
Query: 118 RFANVDDIKIVINYDFPNQFEDYIHRIGRTARSGKRGMSYTFFNRXXXXXXXXXXXXMED 297
R ++ ++K VIN+D P+ E+Y+HRIGRT R G G++ +FFN + +
Sbjct: 503 RGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVE 562
Query: 298 AKQVVPDGLYDMAFVPNEK-RRKPYNNNPLFSNGF--YQPNSSLGKSTLAYTSSDLSNSK 468
AKQ VP L +MAF + K + + + FS GF S G S+ +++SS S+S+
Sbjct: 563 AKQEVPSWLENMAFEHHYKGSSRGRSKSSRFSGGFGARDYRQSSGASSSSFSSSRASSSR 622
>sp|O00571|DDX3X_HUMAN DEAD-box protein 3, X-chromosomal (Helicase-like protein 2) (HLP2)
(DEAD-box, X isoform)
Length = 662
Score = 69.7 bits (169), Expect = 1e-11
Identities = 41/120 (34%), Positives = 66/120 (55%), Gaps = 3/120 (2%)
Frame = +1
Query: 118 RFANVDDIKIVINYDFPNQFEDYIHRIGRTARSGKRGMSYTFFNRXXXXXXXXXXXXMED 297
R ++ ++K VIN+D P+ E+Y+HRIGRT R G G++ +FFN + +
Sbjct: 503 RGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVE 562
Query: 298 AKQVVPDGLYDMAFVPNEK-RRKPYNNNPLFSNGF--YQPNSSLGKSTLAYTSSDLSNSK 468
AKQ VP L +MA+ + K + + + FS GF S G S+ +++SS S+S+
Sbjct: 563 AKQEVPSWLENMAYEHHYKGSSRGRSKSSRFSGGFGARDYRQSSGASSSSFSSSRASSSR 622
>sp|Q92841|DDX17_HUMAN Probable ATP-dependent helicase DDX17 (DEAD-box protein 17)
(RNA-dependent helicase p72) (DEAD-box protein p72)
Length = 650
Score = 68.9 bits (167), Expect = 2e-11
Identities = 31/65 (47%), Positives = 41/65 (63%)
Frame = +1
Query: 118 RFANVDDIKIVINYDFPNQFEDYIHRIGRTARSGKRGMSYTFFNRXXXXXXXXXXXXMED 297
R +V+D+K VINYD+PN EDY+HRIGRTARS +G +YTFF +E+
Sbjct: 401 RGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEE 460
Query: 298 AKQVV 312
A Q +
Sbjct: 461 ANQAI 465
>sp|Q501J6|DDX17_MOUSE Probable ATP-dependent helicase DDX17 (DEAD-box protein 17)
Length = 650
Score = 68.9 bits (167), Expect = 2e-11
Identities = 31/65 (47%), Positives = 41/65 (63%)
Frame = +1
Query: 118 RFANVDDIKIVINYDFPNQFEDYIHRIGRTARSGKRGMSYTFFNRXXXXXXXXXXXXMED 297
R +V+D+K VINYD+PN EDY+HRIGRTARS +G +YTFF +E+
Sbjct: 401 RGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEE 460
Query: 298 AKQVV 312
A Q +
Sbjct: 461 ANQAI 465
>sp|Q61656|DDX5_MOUSE Probable RNA-dependent helicase p68 (DEAD-box protein p68)
(DEAD-box protein 5) (DEAD-box RNA helicase DEAD1)
(mDEAD1)
Length = 614
Score = 68.2 bits (165), Expect = 3e-11
Identities = 32/65 (49%), Positives = 40/65 (61%)
Frame = +1
Query: 118 RFANVDDIKIVINYDFPNQFEDYIHRIGRTARSGKRGMSYTFFNRXXXXXXXXXXXXMED 297
R +V+D+K VINYD+PN EDYIHRIGRTARS K G +YTFF + +
Sbjct: 403 RGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLRE 462
Query: 298 AKQVV 312
A Q +
Sbjct: 463 ANQAI 467
>sp|Q62095|DDX3Y_MOUSE DEAD-box protein 3, Y-chromosomal (DEAD-box RNA helicase DEAD2)
(mDEAD2) (D1Pas1-related sequence 1)
Length = 658
Score = 68.2 bits (165), Expect = 3e-11
Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Frame = +1
Query: 118 RFANVDDIKIVINYDFPNQFEDYIHRIGRTARSGKRGMSYTFFNRXXXXXXXXXXXXMED 297
R ++ ++K VIN+D P+ E+Y+HRIGRT R G G++ +FFN + +
Sbjct: 502 RGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNLNITKDLLDLLVE 561
Query: 298 AKQVVPDGLYDMAFVPNEKRRKPYNNNPLFSNGF--YQPNSSLGKSTLAYTSSDLSNSK 468
AKQ VP L MA+ + K + FS GF S G + + S+ ++S+
Sbjct: 562 AKQEVPSWLESMAYEHHYKGSSRGRSKSRFSGGFGARDYRQSSGSANAGFNSNRANSSR 620
>sp|P17844|DDX5_HUMAN Probable RNA-dependent helicase p68 (DEAD-box protein p68)
(DEAD-box protein 5)
Length = 614
Score = 68.2 bits (165), Expect = 3e-11
Identities = 32/65 (49%), Positives = 40/65 (61%)
Frame = +1
Query: 118 RFANVDDIKIVINYDFPNQFEDYIHRIGRTARSGKRGMSYTFFNRXXXXXXXXXXXXMED 297
R +V+D+K VINYD+PN EDYIHRIGRTARS K G +YTFF + +
Sbjct: 403 RGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLRE 462
Query: 298 AKQVV 312
A Q +
Sbjct: 463 ANQAI 467
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,514,008
Number of Sequences: 369166
Number of extensions: 2280952
Number of successful extensions: 6568
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6541
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9654860130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)