Planaria EST Database

DrC_01027

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01027
         (286 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P58242|AS3B_MOUSE  Acid sphingomyelinase-like phosphodies...    33   0.16 
sp|P42836|PFA3_YEAST  Palmitoyltransferase PFA3 (Protein fat...    28   6.5  
sp|P79457|UTY_MOUSE  Ubiquitously transcribed Y chromosome t...    28   6.5  

>sp|P58242|AS3B_MOUSE Acid sphingomyelinase-like phosphodiesterase 3b precursor (ASM-like
           phosphodiesterase 3b)
          Length = 456

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = -1

Query: 259 IPSMFSNTFHTRMNHICHISHIFRNYRIYHVFRICHI-CHISRIFRICHVCHVFHICRIY 83
           +P    ++ HT +  I    HI + Y +Y+     H+ C  S        C + H+C I 
Sbjct: 367 VPDASVSSMHTALTRIASEPHILQRYYVYNSVSYNHLTCEDS--------CRIEHVCAIQ 418

Query: 82  HIFRNNH 62
           H+  N +
Sbjct: 419 HVAFNTY 425

>sp|P42836|PFA3_YEAST Palmitoyltransferase PFA3 (Protein fatty acyltransferase 3)
          Length = 336

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 166 FRICHICHISRIFRICHVCHVFHIC 92
           FR+C +CH+ +  R CH C    +C
Sbjct: 103 FRVCQVCHVWKPDR-CHHCSSCDVC 126

>sp|P79457|UTY_MOUSE Ubiquitously transcribed Y chromosome tetratricopeptide repeat
           protein (Ubiquitously transcribed TPR protein ON the Y
           chromosome) (Male-specific histocompatibility antigen
           H-YDB)
          Length = 1212

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = -1

Query: 157 CHICHISRIFRICHVCHVFHICRIYHIFRNNHQQLRKL 44
           C++C +S +    H+ H++   R YH  +  ++QL ++
Sbjct: 192 CNVCTLSSVEIQFHIAHLYETQRKYHSAKAAYEQLLQI 229

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,604,931
Number of Sequences: 369166
Number of extensions: 200319
Number of successful extensions: 549
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 68,354,980
effective HSP length: 64
effective length of database: 56,531,940
effective search space used: 1695958200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01027

  1. Dr_sW_025_O21
  2. Dr_sW_027_F22
  3. Dr_sW_008_P17
  4. Dr_sW_017_L14
  5. Dr_sW_026_J24