Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_F22
(260 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P58242|AS3B_MOUSE Acid sphingomyelinase-like phosphodies... 33 0.15
sp|P42836|PFA3_YEAST Palmitoyltransferase PFA3 (Protein fat... 28 6.5
sp|P79457|UTY_MOUSE Ubiquitously transcribed Y chromosome t... 28 6.5
>sp|P58242|AS3B_MOUSE Acid sphingomyelinase-like phosphodiesterase 3b precursor (ASM-like
phosphodiesterase 3b)
Length = 456
Score = 33.5 bits (75), Expect = 0.15
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -1
Query: 233 IPSMFSNTFHTRMNHICHISHIFRNYRIYHVFRICHI-CHISRIFRICHVCHVFHICRIY 57
+P ++ HT + I HI + Y +Y+ H+ C S C + H+C I
Sbjct: 367 VPDASVSSMHTALTRIASEPHILQRYYVYNSVSYNHLTCEDS--------CRIEHVCAIQ 418
Query: 56 HIFRNNH 36
H+ N +
Sbjct: 419 HVAFNTY 425
>sp|P42836|PFA3_YEAST Palmitoyltransferase PFA3 (Protein fatty acyltransferase 3)
Length = 336
Score = 28.1 bits (61), Expect = 6.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 140 FRICHICHISRIFRICHVCHVFHIC 66
FR+C +CH+ + R CH C +C
Sbjct: 103 FRVCQVCHVWKPDR-CHHCSSCDVC 126
>sp|P79457|UTY_MOUSE Ubiquitously transcribed Y chromosome tetratricopeptide repeat
protein (Ubiquitously transcribed TPR protein ON the Y
chromosome) (Male-specific histocompatibility antigen
H-YDB)
Length = 1212
Score = 28.1 bits (61), Expect = 6.5
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = -1
Query: 131 CHICHISRIFRICHVCHVFHICRIYHIFRNNHQQLRKL 18
C++C +S + H+ H++ R YH + ++QL ++
Sbjct: 192 CNVCTLSSVEIQFHIAHLYETQRKYHSAKAAYEQLLQI 229
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,925,498
Number of Sequences: 369166
Number of extensions: 176147
Number of successful extensions: 503
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 68,354,980
effective HSP length: 57
effective length of database: 57,825,085
effective search space used: 1676927465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)