Planaria EST Database

DrC_01024

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01024
         (1039 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q12361|GPR1_YEAST  G protein-coupled receptor GPR1              35   0.35 
sp|Q64326|ACTHR_MOUSE  Adrenocorticotropic hormone receptor ...    34   0.60 
sp|P70115|ACTHR_MESAU  Adrenocorticotropic hormone receptor ...    34   0.60 
sp|Q9Z1S9|ACTHR_CAVPO  Adrenocorticotropic hormone receptor ...    33   1.0  
sp|Q695T7|S6A19_HUMAN  Sodium-dependent neutral amino acid t...    33   1.7  
sp|Q01718|ACTHR_HUMAN  Adrenocorticotropic hormone receptor ...    32   2.3  
sp|P51392|YCF26_PORPU  Hypothetical sensor-like histidine ki...    32   3.9  
sp|P34941|NU4M_ARBLI  NADH-ubiquinone oxidoreductase chain 4...    30   8.7  

>sp|Q12361|GPR1_YEAST G protein-coupled receptor GPR1
          Length = 961

 Score = 35.0 bits (79), Expect = 0.35
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
 Frame = +3

Query: 243 LSLADKKTNLLSL-LLQFVAFC----CYIVVVVAMGVMSKDREWMPRPDHNQVSWSFAFA 407
           LS  DK+  +    L+ F+  C     +I+++  M ++  +  +      N + W  AFA
Sbjct: 77  LSKMDKRRKVFRHDLIAFLIICDFLKAFILMIYPMIILINNSVYATPAFFNTLGWFTAFA 136

Query: 408 VLGGFFTIFCFFHLIIHYIVYTWAPNMKPKNKK 506
           + G    I  F    IH+ +  + PN K +NK+
Sbjct: 137 IEGADMAIMIF---AIHFAILIFKPNWKWRNKR 166

>sp|Q64326|ACTHR_MOUSE Adrenocorticotropic hormone receptor (ACTH receptor) (ACTH-R)
           (Melanocortin-2 receptor) (MC2-R) (Adrenocorticotropin
           receptor)
          Length = 296

 Score = 34.3 bits (77), Expect = 0.60
 Identities = 26/97 (26%), Positives = 46/97 (47%)
 Frame = +3

Query: 195 CNGLGFIIVMLKFVDALSLADKKTNLLSLLLQFVAFCCYIVVVVAMGVMSKDREWMPRPD 374
           C G G  I M+ F   +      T+L  L+L F+  C YI + +     ++    +PR +
Sbjct: 158 CTGSG--ITMVIFSHHIPTVLTFTSLFPLMLVFI-LCLYIHMFLLARSHARKISTLPRTN 214

Query: 375 HNQVSWSFAFAVLGGFFTIFCFFHLIIHYIVYTWAPN 485
              +  +    +L G F IFC+   ++H ++ T+ PN
Sbjct: 215 ---MKGAMTLTILLGVF-IFCWAPFVLHVLLMTFCPN 247

>sp|P70115|ACTHR_MESAU Adrenocorticotropic hormone receptor (ACTH receptor) (ACTH-R)
           (Melanocortin-2 receptor) (MC2-R) (Adrenocorticotropin
           receptor)
          Length = 297

 Score = 34.3 bits (77), Expect = 0.60
 Identities = 27/97 (27%), Positives = 46/97 (47%)
 Frame = +3

Query: 195 CNGLGFIIVMLKFVDALSLADKKTNLLSLLLQFVAFCCYIVVVVAMGVMSKDREWMPRPD 374
           C G G  I M+ F   +      T+L  L+L F+  C YI + +     ++    +PR +
Sbjct: 158 CTGSG--IAMVIFSHHVPTVLTFTSLFPLMLVFI-LCLYIHMFLLARSHARKISTLPRAN 214

Query: 375 HNQVSWSFAFAVLGGFFTIFCFFHLIIHYIVYTWAPN 485
              +  +    +L G F IFC+   I+H ++ T+ PN
Sbjct: 215 ---MKGAITLTILLGVF-IFCWAPFILHVLLMTFCPN 247

>sp|Q9Z1S9|ACTHR_CAVPO Adrenocorticotropic hormone receptor (ACTH receptor) (ACTH-R)
           (Melanocortin-2 receptor) (MC2-R) (Adrenocorticotropin
           receptor)
          Length = 297

 Score = 33.5 bits (75), Expect = 1.0
 Identities = 26/97 (26%), Positives = 46/97 (47%)
 Frame = +3

Query: 195 CNGLGFIIVMLKFVDALSLADKKTNLLSLLLQFVAFCCYIVVVVAMGVMSKDREWMPRPD 374
           C G G  I M+ F   +      T+L  L+L F+  C Y+ + +     +++   +PR  
Sbjct: 158 CIGSG--ITMVLFSHHVPTVLTFTSLFPLMLVFI-LCLYVHMFLMARSHARNISTLPR-- 212

Query: 375 HNQVSWSFAFAVLGGFFTIFCFFHLIIHYIVYTWAPN 485
              +  +    +L G F IFC+   I+H ++ T+ PN
Sbjct: 213 -GNMRGAITLTILLGVF-IFCWAPFILHILLVTFCPN 247

>sp|Q695T7|S6A19_HUMAN Sodium-dependent neutral amino acid transporter B(0) (System B(0)
           neutral amino acid transporter) (B(0)AT1) (Solute
           carrier family 6 member 19)
          Length = 634

 Score = 32.7 bits (73), Expect = 1.7
 Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
 Frame = +3

Query: 204 LGFIIVMLKFVDALSLADKKTNLLSLLLQFVAFCCYIVVVVAMGV--MSKDREWMPRPDH 377
           +GFI  +      LSL D     + LL+  +AFC    VV   GV   +KD E+M     
Sbjct: 469 IGFIFTLNSGQYWLSLLDSYAGSIPLLI--IAFCEMFSVVYVYGVDRFNKDIEFMIGHKP 526

Query: 378 N---QVSWSFAFAVLGGFFTIFCFFHLIIHYIVYT-WAPNMK--PKNKK 506
           N   QV+W     +L     +F F   +   + Y+ W P  +  PK++K
Sbjct: 527 NIFWQVTWRVVSPLLMLIIFLFFFVVEVSQELTYSIWDPGYEEFPKSQK 575

>sp|Q01718|ACTHR_HUMAN Adrenocorticotropic hormone receptor (ACTH receptor) (ACTH-R)
           (Melanocortin-2 receptor) (MC2-R) (Adrenocorticotropin
           receptor)
          Length = 297

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 24/97 (24%), Positives = 46/97 (47%)
 Frame = +3

Query: 195 CNGLGFIIVMLKFVDALSLADKKTNLLSLLLQFVAFCCYIVVVVAMGVMSKDREWMPRPD 374
           C G G  I M+ F   +      T+L  L+L F+  C Y+ + +     ++    +PR +
Sbjct: 158 CTGTG--ITMVIFSHHVPTVITFTSLFPLMLVFI-LCLYVHMFLLARSHTRKISTLPRAN 214

Query: 375 HNQVSWSFAFAVLGGFFTIFCFFHLIIHYIVYTWAPN 485
              +  +    +L G F IFC+   ++H ++ T+ P+
Sbjct: 215 ---MKGAITLTILLGVF-IFCWAPFVLHVLLMTFCPS 247

>sp|P51392|YCF26_PORPU Hypothetical sensor-like histidine kinase ycf26
          Length = 656

 Score = 31.6 bits (70), Expect = 3.9
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -2

Query: 927 ICE--EIMFKLQKNHRHNFDVLVLYSFDANLIMNLGY*CPLEVHVLKMPMNESNQLYFSK 754
           ICE  EI  KLQKN++  F VL+    D    +  G    ++    ++ +NE    + S 
Sbjct: 365 ICETQEICIKLQKNYKKTFRVLLTTVLDHKYSILKGIAMTIQDRTQEVELNEIKNQFISN 424

Query: 753 LQH 745
           + H
Sbjct: 425 VSH 427

>sp|P34941|NU4M_ARBLI NADH-ubiquinone oxidoreductase chain 4 (NADH dehydrogenase subunit
           4)
          Length = 457

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 578 WIHSNSTTLLRFSVLLLEWQFTILFLIFRFHIWCPCIH 465
           W+ +NS+T L    LL    F +   I+ FH+W P  H
Sbjct: 182 WLTTNSSTSLTVWWLLSILAFLVKMPIYGFHLWLPKAH 219

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,815,312
Number of Sequences: 369166
Number of extensions: 2386547
Number of successful extensions: 5509
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5507
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 11196758430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01024

  1. Dr_sW_025_M08
  2. Dr_sW_010_B18