Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_M08
(478 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q695T7|S6A19_HUMAN Sodium-dependent neutral amino acid t... 31 1.7
sp|Q9UI33|SC11A_HUMAN Sodium channel protein type XI alpha ... 30 2.9
sp|P59093|CU099_HUMAN Protein C21orf99 29 6.4
sp|Q8NGL2|OR5L1_HUMAN Olfactory receptor 5L1 (OST262) 29 6.4
sp|Q9JHJ1|RAMP2_RAT Receptor activity-modifying protein 2 p... 29 6.4
sp|P24889|NU2M_CAEEL NADH-ubiquinone oxidoreductase chain 2... 29 6.4
>sp|Q695T7|S6A19_HUMAN Sodium-dependent neutral amino acid transporter B(0) (System B(0)
neutral amino acid transporter) (B(0)AT1) (Solute
carrier family 6 member 19)
Length = 634
Score = 30.8 bits (68), Expect = 1.7
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Frame = +3
Query: 204 LGFIIVMLKFVDALSLADKKTNLLSLLLQFVAFCCYIVVVVAMGV--MSKDREWMPRPDH 377
+GFI + LSL D + LL+ +AFC VV GV +KD E+M
Sbjct: 469 IGFIFTLNSGQYWLSLLDSYAGSIPLLI--IAFCEMFSVVYVYGVDRFNKDIEFMIGHKP 526
Query: 378 N---QVSWSFAFAVLGGFFTIFCFFHLI 452
N QV+W +L IF FF ++
Sbjct: 527 NIFWQVTWRVVSPLL--MLIIFLFFFVV 552
>sp|Q9UI33|SC11A_HUMAN Sodium channel protein type XI alpha subunit (Voltage-gated sodium
channel alpha subunit Nav1.9) (Sensory neuron sodium
channel 2) (Peripheral nerve sodium channel 5) (hNaN)
Length = 1791
Score = 30.0 bits (66), Expect = 2.9
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 255 DKKTNLLSLLLQFVAFCCYIVVVVAMGVMSKDREWMPRPDHNQVSWSF--AFAVLGGFFT 428
D N LLQ F ++ ++ A V S ++E P + N + + + F + G FFT
Sbjct: 1241 DNVGNAYLALLQVATFKGWMDIIYA-AVDSTEKEQQPEFESNSLGYIYFVVFIIFGSFFT 1299
Query: 429 IFCFFHLII 455
+ F +II
Sbjct: 1300 LNLFIGVII 1308
>sp|P59093|CU099_HUMAN Protein C21orf99
Length = 68
Score = 28.9 bits (63), Expect = 6.4
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 182 RRQHLNGIKPWWIQPITNKI 123
R++HL +K WW + +TN+I
Sbjct: 48 RKEHLTRLKAWWKEHLTNRI 67
>sp|Q8NGL2|OR5L1_HUMAN Olfactory receptor 5L1 (OST262)
Length = 311
Score = 28.9 bits (63), Expect = 6.4
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 216 IVMLKFVDALSLADKKTNLLSLLLQFVAFC-CYIVVVVAMGVMSKDR 353
I++ K + + DK + L ++QF FC C + V + VM+ DR
Sbjct: 76 IIVPKMLANIFNKDKAISFLGCMVQFYLFCTCVVTEVFLLAVMAYDR 122
>sp|Q9JHJ1|RAMP2_RAT Receptor activity-modifying protein 2 precursor
Length = 182
Score = 28.9 bits (63), Expect = 6.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 66 EDYVSKMYSGCWYVYWPEYDFIRDWLN 146
EDY + + CWY Y D ++DW N
Sbjct: 67 EDYETNVLP-CWYYYKTSMDSVKDWCN 92
>sp|P24889|NU2M_CAEEL NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 282
Score = 28.9 bits (63), Expect = 6.4
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 393 SFAFAVLGGFFTIFCFFHLIIHYIV 467
SF + VLG FF++F F+L I+Y V
Sbjct: 156 SFNWIVLGVFFSMFNTFYLFIYYFV 180
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,532,713
Number of Sequences: 369166
Number of extensions: 997295
Number of successful extensions: 2325
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2325
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2832714465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)