Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_B18
(679 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P51392|YCF26_PORPU Hypothetical sensor-like histidine ki... 32 2.0
sp|P34941|NU4M_ARBLI NADH-ubiquinone oxidoreductase chain 4... 30 4.4
sp|Q12361|GPR1_YEAST G protein-coupled receptor GPR1 30 4.4
sp|P32581|IME2_YEAST Meiosis induction protein kinase IME2/... 30 5.8
sp|O87386|SOXA_RHIME Sarcosine oxidase alpha subunit (Sarco... 30 7.6
>sp|P51392|YCF26_PORPU Hypothetical sensor-like histidine kinase ycf26
Length = 656
Score = 31.6 bits (70), Expect = 2.0
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -2
Query: 567 ICE--EIMFKLQKNHRHNFDVLVLYSFDANLIMNLGY*CPLEVHVLKMPMNESNQLYFSK 394
ICE EI KLQKN++ F VL+ D + G ++ ++ +NE + S
Sbjct: 365 ICETQEICIKLQKNYKKTFRVLLTTVLDHKYSILKGIAMTIQDRTQEVELNEIKNQFISN 424
Query: 393 LQH 385
+ H
Sbjct: 425 VSH 427
>sp|P34941|NU4M_ARBLI NADH-ubiquinone oxidoreductase chain 4 (NADH dehydrogenase subunit
4)
Length = 457
Score = 30.4 bits (67), Expect = 4.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 218 WIHSNSTTLLRFSVLLLEWQFTILFLIFRFHIWCPCIH 105
W+ +NS+T L LL F + I+ FH+W P H
Sbjct: 182 WLTTNSSTSLTVWWLLSILAFLVKMPIYGFHLWLPKAH 219
>sp|Q12361|GPR1_YEAST G protein-coupled receptor GPR1
Length = 961
Score = 30.4 bits (67), Expect = 4.4
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 18 NQVSWSFAFAVLGGFFTIFCFFHLIIHYIVYTWAPNMKPKNKK 146
N + W AFA+ G I F IH+ + + PN K +NK+
Sbjct: 127 NTLGWFTAFAIEGADMAIMIF---AIHFAILIFKPNWKWRNKR 166
>sp|P32581|IME2_YEAST Meiosis induction protein kinase IME2/SME1
Length = 645
Score = 30.0 bits (66), Expect = 5.8
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +3
Query: 114 WAPNMKPKNKKEYCELPFQEENTKSQ-QGSGIGMNPAASTLYSQSGIKPISMXXXXXXXX 290
W PN + +E CE+PF E SQ G N + ++ +GI P++
Sbjct: 369 WDPNERA-TAQELCEMPFFENTVASQVDARGNVTNTEQALIF--AGINPVATNTKPIYFN 425
Query: 291 XXXKI-REAMSQKIKQTSNEKNQHGGSMSSLN 383
K+ E S I ++N+ + H +LN
Sbjct: 426 SSTKLPAETESNDIDISNNDHDSHAMCSPTLN 457
>sp|O87386|SOXA_RHIME Sarcosine oxidase alpha subunit (Sarcosine oxidase subunit)
Length = 987
Score = 29.6 bits (65), Expect = 7.6
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +3
Query: 390 GVLKNKAGSTHSLASLGRGPQADINTRGSLSSLHQ 494
G+L A ++L ++GRG +A+ NTR ++ L++
Sbjct: 58 GILTAGAAEPNALVTVGRGGRAEPNTRATMQELYE 92
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,309,722
Number of Sequences: 369166
Number of extensions: 1503295
Number of successful extensions: 3648
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3648
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5733423530
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)